Wall clock time and date at job start Wed Apr 1 2020 02:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31405 * 1 3 3 Si 1.86802 * 120.00338 * 2 1 4 4 H 1.48499 * 109.46783 * 270.00290 * 3 2 1 5 5 H 1.48499 * 109.46891 * 29.99756 * 3 2 1 6 6 H 1.48494 * 109.47275 * 149.99945 * 3 2 1 7 7 C 1.38952 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00317 * 0.02562 * 7 2 1 9 9 N 1.37103 * 120.00037 * 179.97438 * 7 2 1 10 10 C 1.34771 * 120.00231 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99913 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00466 * 180.02562 * 10 9 7 13 13 N 1.46887 * 109.47447 * 180.02562 * 12 10 9 14 14 C 1.50657 * 111.00283 * 81.90984 * 13 12 10 15 15 H 1.09006 * 115.87425 * 295.93480 * 14 13 12 16 16 C 1.55848 * 101.03062 * 170.24034 * 14 13 12 17 17 C 1.54842 * 103.51766 * 327.00392 * 16 14 13 18 18 C 1.50649 * 111.00204 * 189.99992 * 13 12 10 19 19 H 1.09001 * 115.88171 * 63.34837 * 18 13 12 20 20 C 1.55852 * 101.02810 * 297.65167 * 18 13 12 21 21 H 1.09003 * 110.61171 * 85.67138 * 20 18 13 22 22 N 1.46495 * 110.61059 * 208.49485 * 20 18 13 23 23 C 1.34774 * 120.00518 * 274.07042 * 22 20 18 24 24 O 1.21562 * 119.99679 * 0.02562 * 23 22 20 25 25 C 1.47846 * 120.00515 * 180.02562 * 23 22 20 26 26 C 1.39572 * 120.14475 * 180.02562 * 25 23 22 27 27 C 1.37958 * 119.85281 * 180.02562 * 26 25 23 28 28 C 1.38360 * 120.14483 * 359.97438 * 27 26 25 29 29 C 1.38363 * 120.29308 * 0.26765 * 28 27 26 30 30 C 1.37964 * 120.14254 * 359.50098 * 29 28 27 31 31 C 1.54834 * 103.65863 * 327.08322 * 20 18 13 32 32 H 0.97005 * 120.00224 * 0.02562 * 1 2 3 33 33 H 0.97008 * 119.99705 * 0.02562 * 9 7 2 34 34 H 1.09000 * 109.46869 * 60.00103 * 12 10 9 35 35 H 1.09009 * 109.46976 * 300.00552 * 12 10 9 36 36 H 1.08999 * 110.61528 * 85.51238 * 16 14 13 37 37 H 1.08997 * 110.61186 * 208.34344 * 16 14 13 38 38 H 1.08996 * 110.61242 * 241.49339 * 17 16 14 39 39 H 1.08998 * 110.61051 * 118.50905 * 17 16 14 40 40 H 0.97006 * 119.99890 * 94.08174 * 22 20 18 41 41 H 1.07999 * 120.07654 * 359.97438 * 26 25 23 42 42 H 1.08001 * 119.93099 * 179.97438 * 27 26 25 43 43 H 1.08002 * 119.85636 * 179.97438 * 28 27 26 44 44 H 1.07994 * 119.92778 * 179.74563 * 29 28 27 45 45 H 1.07993 * 120.07388 * 180.24932 * 30 29 28 46 46 H 1.09003 * 110.61362 * 118.42584 * 31 20 18 47 47 H 1.08994 * 110.61178 * 241.41335 * 31 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4956 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1387 0.0005 9 7 3.3798 -1.2034 0.0000 10 6 4.0537 -2.3706 0.0000 11 8 3.4472 -3.4210 0.0000 12 6 5.5607 -2.3707 0.0000 13 7 6.0503 -3.7556 -0.0006 14 6 6.0436 -4.3300 -1.3933 15 1 5.0644 -4.4321 -1.8612 16 6 6.8252 -5.6599 -1.1711 17 6 7.8401 -5.3016 -0.0580 18 6 7.5361 -3.8031 0.2436 19 1 7.8713 -3.4302 1.2114 20 6 8.0673 -3.0251 -0.9980 21 1 8.0680 -1.9519 -0.8069 22 7 9.4111 -3.4840 -1.3580 23 6 10.4908 -2.9444 -0.7584 24 8 10.3495 -2.0771 0.0816 25 6 11.8470 -3.4073 -1.1221 26 6 12.9671 -2.8508 -0.5026 27 6 14.2298 -3.2868 -0.8470 28 6 14.3872 -4.2738 -1.8038 29 6 13.2813 -4.8261 -2.4253 30 6 12.0127 -4.4024 -2.0867 31 6 7.0532 -3.3796 -2.1130 32 1 -0.4851 0.8401 -0.0004 33 1 3.8648 -0.3633 -0.0004 34 1 5.9240 -1.8569 0.8900 35 1 5.9240 -1.8567 -0.8900 36 1 6.1520 -6.4494 -0.8369 37 1 7.3419 -5.9584 -2.0832 38 1 8.8621 -5.4210 -0.4176 39 1 7.6700 -5.9135 0.8279 40 1 9.5238 -4.1763 -2.0281 41 1 12.8457 -2.0801 0.2441 42 1 15.0975 -2.8569 -0.3687 43 1 15.3780 -4.6114 -2.0702 44 1 13.4111 -5.5932 -3.1743 45 1 11.1501 -4.8370 -2.5696 46 1 6.5491 -2.4825 -2.4727 47 1 7.5503 -3.8968 -2.9335 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108868243.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:54:07 Heat of formation + Delta-G solvation = -26.515452 kcal Electronic energy + Delta-G solvation = -29819.710684 eV Core-core repulsion = 25774.337065 eV Total energy + Delta-G solvation = -4045.373619 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.43851 -40.86681 -39.89668 -39.01234 -36.04046 -35.48029 -33.80491 -33.12295 -32.33703 -31.84066 -30.80427 -29.53687 -28.22459 -25.82640 -24.91865 -23.52857 -22.96623 -21.92550 -21.56379 -20.98296 -20.55884 -20.00989 -19.04567 -17.91866 -17.45792 -17.21483 -16.94249 -16.74487 -16.59052 -16.21528 -15.78766 -15.58946 -15.47770 -15.19195 -14.73810 -14.58294 -14.45007 -14.32285 -14.08399 -13.80504 -13.54869 -13.35957 -13.28377 -13.02933 -12.78182 -12.68516 -12.56367 -12.53061 -12.43336 -12.01566 -12.00923 -11.91911 -11.72595 -11.51063 -11.18166 -11.05718 -10.53343 -10.31714 -10.25166 -9.92775 -9.90828 -9.34429 -8.42401 -6.02571 -0.11465 0.44420 1.28714 1.32400 1.41572 1.85390 1.94331 2.03325 2.20736 2.58562 2.92709 3.12659 3.14221 3.46823 3.54244 3.69551 3.79501 3.93431 4.04249 4.05211 4.08319 4.15263 4.20103 4.27974 4.32665 4.35969 4.41091 4.49345 4.49984 4.56623 4.69462 4.76860 4.89373 4.91632 4.98380 5.08492 5.16457 5.21884 5.25599 5.35733 5.43254 5.48349 5.51398 5.54390 5.72989 5.85684 5.97575 5.98180 6.48428 6.58870 6.87499 7.16336 7.38925 7.96171 8.75222 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019303 B = 0.002409 C = 0.002225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.198996 B =11620.936848 C =12582.735071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.962 3.038 4 H -0.255 1.255 5 H -0.274 1.274 6 H -0.238 1.238 7 C -0.325 4.325 8 H 0.057 0.943 9 N -0.595 5.595 10 C 0.457 3.543 11 O -0.604 6.604 12 C 0.031 3.969 13 N -0.493 5.493 14 C 0.044 3.956 15 H 0.092 0.908 16 C -0.105 4.105 17 C -0.104 4.104 18 C 0.035 3.965 19 H 0.103 0.897 20 C 0.122 3.878 21 H 0.078 0.922 22 N -0.693 5.693 23 C 0.555 3.445 24 O -0.580 6.580 25 C -0.154 4.154 26 C -0.083 4.083 27 C -0.134 4.134 28 C -0.093 4.093 29 C -0.128 4.128 30 C -0.084 4.084 31 C -0.150 4.150 32 H 0.279 0.721 33 H 0.387 0.613 34 H 0.103 0.897 35 H 0.087 0.913 36 H 0.059 0.941 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.062 0.938 40 H 0.415 0.585 41 H 0.118 0.882 42 H 0.145 0.855 43 H 0.154 0.846 44 H 0.158 0.842 45 H 0.150 0.850 46 H 0.076 0.924 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.467 -8.645 -8.887 36.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.213 4.213 3 Si 0.782 3.218 4 H -0.179 1.179 5 H -0.199 1.199 6 H -0.161 1.161 7 C -0.454 4.454 8 H 0.075 0.925 9 N -0.237 5.237 10 C 0.244 3.756 11 O -0.488 6.488 12 C -0.101 4.101 13 N -0.216 5.216 14 C -0.064 4.064 15 H 0.110 0.890 16 C -0.143 4.143 17 C -0.142 4.142 18 C -0.075 4.075 19 H 0.121 0.879 20 C 0.015 3.985 21 H 0.096 0.904 22 N -0.346 5.346 23 C 0.344 3.656 24 O -0.461 6.461 25 C -0.158 4.158 26 C -0.102 4.102 27 C -0.151 4.151 28 C -0.111 4.111 29 C -0.146 4.146 30 C -0.103 4.103 31 C -0.189 4.189 32 H 0.089 0.911 33 H 0.222 0.778 34 H 0.121 0.879 35 H 0.104 0.896 36 H 0.078 0.922 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.081 0.919 40 H 0.255 0.745 41 H 0.136 0.864 42 H 0.163 0.837 43 H 0.171 0.829 44 H 0.175 0.825 45 H 0.168 0.832 46 H 0.095 0.905 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 33.343 -8.950 -7.860 35.406 hybrid contribution -0.275 1.540 -0.304 1.594 sum 33.068 -7.410 -8.164 34.858 Atomic orbital electron populations 1.69794 1.07974 1.29167 1.50467 1.26061 0.96467 1.02518 0.96250 0.85409 0.79335 0.77080 0.80001 1.17921 1.19864 1.16117 1.18989 0.81334 0.94918 1.50156 0.92526 1.42064 1.05895 1.07483 1.68223 1.20749 0.90444 0.83323 0.81038 1.90530 1.71169 1.32615 1.54478 1.22062 0.90945 0.93004 1.04060 1.67446 1.13735 1.15490 1.24892 1.24519 0.97787 0.96177 0.87941 0.88996 1.22598 0.97035 0.95196 0.99486 1.22517 0.99595 0.92961 0.99106 1.24862 0.86573 0.98085 0.97931 0.87893 1.22582 0.81806 0.99035 0.95081 0.90386 1.45757 1.04348 1.41577 1.42921 1.18719 0.85480 0.80911 0.80465 1.90771 1.87360 1.33361 1.34620 1.19914 0.92059 1.01680 1.02100 1.21372 0.92463 0.98322 0.98014 1.21427 0.96808 0.98160 0.98749 1.21804 1.00633 0.94465 0.94200 1.21531 0.91660 1.00769 1.00613 1.21597 0.99510 0.94371 0.94813 1.23527 0.96191 1.01057 0.98085 0.91149 0.77764 0.87919 0.89573 0.92231 0.87883 0.88890 0.91877 0.74524 0.86385 0.83691 0.82878 0.82472 0.83200 0.90510 0.86728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.26 13.96 21.66 0.30 -56.96 16 2 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 3 Si 0.96 40.34 27.74 68.60 1.90 42.24 16 4 H -0.25 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 6 H -0.24 -8.69 6.52 99.48 0.65 -8.04 16 7 C -0.32 -19.54 10.16 84.04 0.85 -18.69 16 8 H 0.06 4.03 7.39 -2.91 -0.02 4.01 16 9 N -0.59 -29.38 5.09 -306.98 -1.56 -30.95 16 10 C 0.46 21.74 7.72 87.66 0.68 22.42 16 11 O -0.60 -34.65 15.58 -3.09 -0.05 -34.70 16 12 C 0.03 1.07 4.83 85.56 0.41 1.48 16 13 N -0.49 -15.74 5.09 -808.09 -4.11 -19.85 16 14 C 0.04 1.17 4.57 46.28 0.21 1.38 16 15 H 0.09 3.03 7.96 -2.38 -0.02 3.01 16 16 C -0.11 -2.07 6.44 32.21 0.21 -1.86 16 17 C -0.10 -2.02 6.32 32.21 0.20 -1.82 16 18 C 0.03 0.86 4.80 46.15 0.22 1.08 16 19 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 20 C 0.12 2.51 2.26 46.60 0.11 2.62 16 21 H 0.08 1.93 7.19 -2.39 -0.02 1.91 16 22 N -0.69 -10.81 3.58 -437.79 -1.57 -12.38 16 23 C 0.56 11.69 7.77 86.79 0.67 12.37 16 24 O -0.58 -17.51 16.08 -3.91 -0.06 -17.57 16 25 C -0.15 -2.51 5.87 -20.09 -0.12 -2.63 16 26 C -0.08 -1.37 9.60 22.53 0.22 -1.16 16 27 C -0.13 -1.46 10.03 22.23 0.22 -1.23 16 28 C -0.09 -0.68 10.04 22.33 0.22 -0.46 16 29 C -0.13 -0.86 10.03 22.23 0.22 -0.63 16 30 C -0.08 -0.79 9.54 22.53 0.21 -0.57 16 31 C -0.15 -2.84 5.41 32.34 0.18 -2.67 16 32 H 0.28 15.64 8.31 -92.70 -0.77 14.87 16 33 H 0.39 16.19 5.76 -92.70 -0.53 15.65 16 34 H 0.10 3.24 8.09 -2.39 -0.02 3.22 16 35 H 0.09 2.49 5.09 -2.38 -0.01 2.48 16 36 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.10 1.23 7.83 -2.39 -0.02 1.21 16 38 H 0.09 1.32 6.48 -2.39 -0.02 1.30 16 39 H 0.06 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.42 3.55 6.05 -92.70 -0.56 2.99 16 41 H 0.12 2.28 7.65 -2.91 -0.02 2.25 16 42 H 0.15 0.99 8.06 -2.91 -0.02 0.97 16 43 H 0.15 0.28 8.06 -2.91 -0.02 0.25 16 44 H 0.16 0.16 8.06 -2.91 -0.02 0.14 16 45 H 0.15 0.51 6.41 -2.91 -0.02 0.49 16 46 H 0.08 1.59 6.95 -2.39 -0.02 1.57 16 47 H 0.11 1.36 7.36 -2.39 -0.02 1.35 16 Total: -1.00 -85.65 375.85 -0.09 -85.74 By element: Atomic # 1 Polarization: 35.27 SS G_CDS: -0.13 Total: 35.14 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: 5.19 Total: 9.29 kcal Atomic # 7 Polarization: -113.20 SS G_CDS: -6.94 Total: -120.14 kcal Atomic # 8 Polarization: -52.16 SS G_CDS: -0.11 Total: -52.27 kcal Atomic # 14 Polarization: 40.34 SS G_CDS: 1.90 Total: 42.24 kcal Total: -85.65 -0.09 -85.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108868243.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.225 kcal (2) G-P(sol) polarization free energy of solvation -85.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds