Wall clock time and date at job start Wed Apr 1 2020 01:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86806 * 120.00142 * 2 1 4 4 H 1.48496 * 109.47064 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46933 * 300.00229 * 3 2 1 6 6 H 1.48503 * 109.46571 * 60.00289 * 3 2 1 7 7 C 1.38945 * 119.99780 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99910 * 179.97438 * 7 2 1 9 9 N 1.37094 * 120.00079 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00139 * 180.02562 * 9 7 2 11 11 O 1.21299 * 119.99863 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00182 * 179.72668 * 10 9 7 13 13 N 1.46902 * 109.47354 * 186.40994 * 12 10 9 14 14 C 1.48529 * 110.99816 * 59.23892 * 13 12 10 15 15 C 1.54941 * 103.22355 * 159.72308 * 14 13 12 16 16 H 1.08996 * 110.87764 * 81.01839 * 15 14 13 17 17 N 1.46508 * 110.72122 * 204.22746 * 15 14 13 18 18 C 1.34773 * 120.00178 * 268.49785 * 17 15 14 19 19 O 1.21283 * 120.00027 * 0.02562 * 18 17 15 20 20 C 1.50697 * 120.00022 * 180.02562 * 18 17 15 21 21 F 1.39903 * 110.01690 * 54.30294 * 20 18 17 22 22 C 1.54271 * 110.03121 * 292.90992 * 20 18 17 23 23 C 1.54961 * 104.15905 * 217.13375 * 22 20 18 24 24 C 1.54887 * 102.77732 * 37.89103 * 23 22 20 25 25 C 1.53870 * 110.03377 * 175.69627 * 20 18 17 26 26 C 1.54590 * 102.92469 * 322.58501 * 15 14 13 27 27 H 1.08998 * 110.31257 * 140.87175 * 26 15 14 28 28 O 1.42901 * 110.31328 * 263.04413 * 26 15 14 29 29 C 1.47898 * 110.99974 * 176.64065 * 13 12 10 30 30 H 0.97002 * 119.99956 * 359.97438 * 1 2 3 31 31 H 0.97005 * 120.00412 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47348 * 306.41210 * 12 10 9 33 33 H 1.09004 * 109.47116 * 66.41097 * 12 10 9 34 34 H 1.08995 * 110.67280 * 278.15519 * 14 13 12 35 35 H 1.08997 * 110.66774 * 41.29328 * 14 13 12 36 36 H 0.96999 * 119.99812 * 88.50833 * 17 15 14 37 37 H 1.08994 * 110.48736 * 335.78864 * 22 20 18 38 38 H 1.09001 * 110.48348 * 98.42986 * 22 20 18 39 39 H 1.08996 * 110.72510 * 279.57738 * 23 22 20 40 40 H 1.08998 * 110.76478 * 156.22767 * 23 22 20 41 41 H 1.09000 * 110.48970 * 203.39815 * 24 23 22 42 42 H 1.09005 * 110.59981 * 80.81865 * 24 23 22 43 43 H 1.09007 * 110.03432 * 238.57260 * 25 20 18 44 44 H 1.09005 * 110.02981 * 359.95043 * 25 20 18 45 45 H 0.96695 * 114.00236 * 177.16552 * 28 26 15 46 46 H 1.08994 * 109.91971 * 333.50396 * 29 13 12 47 47 H 1.08997 * 109.91943 * 94.80842 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.7082 1.3464 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2033 -0.0010 9 7 1.3233 -2.3906 -0.0005 10 6 1.9971 -3.5578 -0.0005 11 8 3.2101 -3.5579 -0.0001 12 6 1.2437 -4.8629 0.0057 13 7 2.1913 -5.9748 0.1590 14 6 2.9623 -5.8467 1.4221 15 6 3.4766 -7.2869 1.6710 16 1 4.3643 -7.4913 1.0724 17 7 3.7529 -7.4999 3.0940 18 6 4.9857 -7.2623 3.5840 19 8 5.8663 -6.8716 2.8472 20 6 5.2700 -7.4820 5.0475 21 9 4.9102 -8.7830 5.4152 22 6 4.4895 -6.4578 5.8971 23 6 5.4592 -6.1073 7.0538 24 6 6.8388 -6.0870 6.3500 25 6 6.7631 -7.2467 5.3356 26 6 2.2903 -8.1628 1.2070 27 1 2.6545 -9.0459 0.6822 28 8 1.4884 -8.5452 2.3263 29 6 1.4803 -7.2685 0.2500 30 1 -0.4850 0.8401 0.0004 31 1 0.3533 -2.3906 -0.0005 32 1 0.5371 -4.8706 0.8357 33 1 0.7019 -4.9742 -0.9336 34 1 3.7966 -5.1569 1.2954 35 1 2.3147 -5.5233 2.2370 36 1 3.0486 -7.8122 3.6833 37 1 4.2609 -5.5693 5.3086 38 1 3.5747 -6.9039 6.2872 39 1 5.4312 -6.8753 7.8267 40 1 5.2244 -5.1284 7.4718 41 1 7.6375 -6.2621 7.0708 42 1 6.9926 -5.1388 5.8347 43 1 7.2073 -8.1459 5.7626 44 1 7.2822 -6.9744 4.4166 45 1 0.7046 -9.0602 2.0910 46 1 0.4769 -7.1137 0.6464 47 1 1.4260 -7.7324 -0.7349 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001219922773.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:45:59 Heat of formation + Delta-G solvation = -161.225727 kcal Electronic energy + Delta-G solvation = -31181.083445 eV Core-core repulsion = 26699.099125 eV Total energy + Delta-G solvation = -4481.984320 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 343.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -48.07803 -40.36369 -39.21859 -37.96928 -37.00152 -35.74299 -34.44141 -33.85253 -31.32084 -30.56290 -29.11703 -29.06353 -27.86215 -26.42209 -24.29171 -22.75173 -21.41526 -21.20430 -20.70420 -19.93845 -19.21969 -18.35923 -17.92109 -17.54732 -16.66172 -16.18648 -15.82348 -15.61171 -15.53830 -15.17908 -14.85979 -14.61221 -14.44869 -14.25802 -14.05333 -13.95875 -13.61779 -13.43672 -13.28399 -13.17041 -12.85936 -12.22258 -12.05864 -11.88915 -11.77387 -11.66686 -11.52386 -11.49824 -11.42404 -11.33907 -11.16209 -11.06987 -10.83802 -10.81362 -10.37235 -10.33228 -10.22578 -9.82143 -9.51457 -9.11167 -8.49293 -8.08503 -7.95219 -6.43160 -3.83785 2.34589 2.77619 3.15635 3.26490 3.34172 3.78124 3.87782 3.95356 4.01562 4.05642 4.24332 4.30571 4.42926 4.53829 4.64857 4.87072 4.91613 4.98579 5.05967 5.11857 5.16785 5.22881 5.30309 5.31019 5.39793 5.50845 5.58401 5.62892 5.64985 5.76348 5.79457 5.82207 5.86175 5.95655 6.03571 6.04988 6.23102 6.29487 6.50710 7.02767 7.10584 7.30710 7.38471 7.54620 8.02866 8.04940 8.59981 9.16987 9.52269 10.04035 10.74655 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010420 B = 0.003063 C = 0.002538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.622850 B = 9138.769882 C =11029.106584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.022 3.978 3 Si 0.929 3.071 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.282 1.282 7 C -0.298 4.298 8 H 0.104 0.896 9 N -0.563 5.563 10 C 0.441 3.559 11 O -0.575 6.575 12 C 0.038 3.962 13 N -0.487 5.487 14 C 0.033 3.967 15 C 0.147 3.853 16 H 0.114 0.886 17 N -0.700 5.700 18 C 0.501 3.499 19 O -0.517 6.517 20 C 0.103 3.897 21 F -0.194 7.194 22 C -0.143 4.143 23 C -0.123 4.123 24 C -0.123 4.123 25 C -0.143 4.143 26 C 0.088 3.912 27 H 0.075 0.925 28 O -0.565 6.565 29 C 0.001 3.999 30 H 0.271 0.729 31 H 0.392 0.608 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.115 0.885 35 H 0.044 0.956 36 H 0.412 0.588 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.083 0.917 44 H 0.104 0.896 45 H 0.384 0.616 46 H 0.057 0.943 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.529 -18.369 11.035 21.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.179 4.179 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.208 1.208 7 C -0.427 4.427 8 H 0.122 0.878 9 N -0.200 5.200 10 C 0.226 3.774 11 O -0.459 6.459 12 C -0.094 4.094 13 N -0.212 5.212 14 C -0.095 4.095 15 C 0.041 3.959 16 H 0.132 0.868 17 N -0.352 5.352 18 C 0.284 3.716 19 O -0.392 6.392 20 C 0.082 3.918 21 F -0.174 7.174 22 C -0.181 4.181 23 C -0.160 4.160 24 C -0.161 4.161 25 C -0.181 4.181 26 C 0.028 3.972 27 H 0.093 0.907 28 O -0.371 6.371 29 C -0.128 4.128 30 H 0.081 0.919 31 H 0.225 0.775 32 H 0.067 0.933 33 H 0.111 0.889 34 H 0.133 0.867 35 H 0.062 0.938 36 H 0.249 0.751 37 H 0.109 0.891 38 H 0.107 0.893 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.233 0.767 46 H 0.075 0.925 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.635 -17.621 10.355 20.957 hybrid contribution -1.916 0.303 0.502 2.004 sum 2.718 -17.318 10.857 20.620 Atomic orbital electron populations 1.69621 1.05947 1.28056 1.50735 1.25259 0.95630 0.99723 0.97319 0.85807 0.79779 0.81118 0.77709 1.19164 1.20719 1.20765 1.19759 0.93417 0.82152 1.47392 0.87817 1.41860 1.09154 1.04575 1.64412 1.19679 0.88428 0.84527 0.84741 1.90519 1.13556 1.86838 1.54980 1.22103 0.93961 0.91387 1.01905 1.64545 1.21920 1.00051 1.34636 1.23730 0.99717 0.96114 0.89983 1.22108 0.97123 0.94847 0.81825 0.86836 1.45648 1.12013 1.67131 1.10389 1.20715 0.82905 0.78162 0.89774 1.90743 1.44925 1.44874 1.58638 1.21838 0.98250 0.79857 0.91903 1.92902 1.93262 1.38739 1.92529 1.23017 0.99020 0.98790 0.97283 1.22527 0.94274 1.02293 0.96937 1.22362 0.97473 0.98655 0.97569 1.22756 0.92398 1.00476 1.02453 1.22945 0.90911 0.96607 0.86747 0.90710 1.86320 1.41044 1.76075 1.33709 1.23732 0.96908 0.92007 1.00119 0.91931 0.77526 0.93318 0.88948 0.86682 0.93775 0.75127 0.89118 0.89339 0.90854 0.90405 0.90776 0.90647 0.89873 0.87758 0.76734 0.92483 0.89448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 2 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 3 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 6 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.30 -8.32 9.68 -14.94 -0.14 -8.46 16 8 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 9 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 10 C 0.44 10.44 7.42 -10.99 -0.08 10.36 16 11 O -0.58 -15.63 13.87 5.54 0.08 -15.55 16 12 C 0.04 0.68 5.30 -4.98 -0.03 0.65 16 13 N -0.49 -8.04 5.11 -231.89 -1.18 -9.23 16 14 C 0.03 0.57 5.27 -1.90 -0.01 0.56 16 15 C 0.15 2.05 3.38 -66.07 -0.22 1.83 16 16 H 0.11 1.74 7.55 -51.93 -0.39 1.35 16 17 N -0.70 -9.07 5.10 -52.00 -0.27 -9.34 16 18 C 0.50 7.12 6.70 -10.99 -0.07 7.05 16 19 O -0.52 -9.08 14.86 5.55 0.08 -9.00 16 20 C 0.10 1.18 1.48 -90.65 -0.13 1.05 16 21 F -0.19 -2.29 16.78 2.25 0.04 -2.25 16 22 C -0.14 -1.40 6.14 -25.03 -0.15 -1.55 16 23 C -0.12 -1.01 6.91 -24.70 -0.17 -1.18 16 24 C -0.12 -1.09 6.83 -25.07 -0.17 -1.26 16 25 C -0.14 -1.51 6.25 -25.62 -0.16 -1.67 16 26 C 0.09 0.93 4.30 -25.37 -0.11 0.82 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 O -0.57 -5.06 11.64 -35.23 -0.41 -5.47 16 29 C 0.00 0.02 6.51 -2.75 -0.02 0.00 16 30 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 31 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 32 H 0.05 0.79 7.98 -51.93 -0.41 0.38 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.12 2.49 6.43 -51.93 -0.33 2.15 16 35 H 0.04 0.77 8.01 -51.93 -0.42 0.35 16 36 H 0.41 4.77 7.24 -40.82 -0.30 4.47 16 37 H 0.09 0.98 7.85 -51.93 -0.41 0.57 16 38 H 0.09 0.75 8.11 -51.93 -0.42 0.33 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 44 H 0.10 1.29 6.40 -51.93 -0.33 0.96 16 45 H 0.38 1.78 9.11 45.56 0.41 2.19 16 46 H 0.06 0.60 7.50 -51.93 -0.39 0.21 16 47 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -33.65 382.80 -8.02 -41.67 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -6.20 Total: 16.72 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -1.57 Total: 8.68 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.78 Total: -56.67 kcal Atomic # 8 Polarization: -29.77 SS G_CDS: -0.25 Total: -30.02 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.04 Total: -2.25 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.65 -8.02 -41.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001219922773.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.556 kcal (2) G-P(sol) polarization free energy of solvation -33.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds