Wall clock time and date at job start Wed Apr 1 2020 02:57:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86799 * 120.00039 * 2 1 4 4 H 1.48500 * 109.47354 * 270.00069 * 3 2 1 5 5 H 1.48503 * 109.47236 * 30.00140 * 3 2 1 6 6 H 1.48503 * 109.47249 * 150.00000 * 3 2 1 7 7 C 1.37882 * 119.99886 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00137 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99624 * 179.97438 * 7 2 1 10 10 N 1.46896 * 109.46742 * 180.02562 * 9 7 2 11 11 C 1.47773 * 111.00137 * 290.12397 * 10 9 7 12 12 C 1.54939 * 104.86606 * 214.30877 * 11 10 9 13 13 C 1.54775 * 101.53115 * 37.32005 * 12 11 10 14 14 H 1.08995 * 112.83442 * 86.12562 * 13 12 11 15 15 C 1.53525 * 109.67729 * 212.78138 * 13 12 11 16 16 N 1.46653 * 107.04761 * 84.85380 * 15 13 12 17 17 C 1.34772 * 125.29078 * 197.42095 * 16 15 13 18 18 O 1.21549 * 119.99657 * 179.97438 * 17 16 15 19 19 N 1.34778 * 120.00062 * 359.97302 * 17 16 15 20 20 C 1.34776 * 119.99503 * 180.02562 * 19 17 16 21 21 O 1.21513 * 120.00564 * 359.97438 * 20 19 17 22 22 C 1.47777 * 119.99393 * 180.02562 * 20 19 17 23 23 C 1.39613 * 120.14797 * 359.72462 * 22 20 19 24 24 C 1.37949 * 119.84642 * 179.71614 * 23 22 20 25 25 C 1.38368 * 120.14694 * 0.56167 * 24 23 22 26 26 C 1.38364 * 120.30084 * 359.71288 * 25 24 23 27 27 C 1.37945 * 120.14992 * 0.02562 * 26 25 24 28 28 C 1.46500 * 109.41969 * 17.39846 * 16 15 13 29 29 C 1.49016 * 110.46418 * 169.18781 * 10 9 7 30 30 H 1.09004 * 113.53999 * 359.15056 * 29 10 9 31 31 H 0.97005 * 120.00262 * 359.97438 * 1 2 3 32 32 H 1.08997 * 109.47388 * 60.00038 * 9 7 2 33 33 H 1.08997 * 109.47332 * 299.99728 * 9 7 2 34 34 H 1.09001 * 110.35915 * 95.46062 * 11 10 9 35 35 H 1.09004 * 110.35811 * 333.15437 * 11 10 9 36 36 H 1.09001 * 111.01363 * 279.25831 * 12 11 10 37 37 H 1.09000 * 111.02006 * 155.37744 * 12 11 10 38 38 H 1.09000 * 109.91778 * 325.50643 * 15 13 12 39 39 H 1.09000 * 110.08747 * 204.29737 * 15 13 12 40 40 H 0.96994 * 119.99689 * 0.02562 * 19 17 16 41 41 H 1.08005 * 120.07326 * 0.02562 * 23 22 20 42 42 H 1.08000 * 119.92333 * 180.27254 * 24 23 22 43 43 H 1.07998 * 119.84535 * 179.69601 * 25 24 23 44 44 H 1.08002 * 119.92366 * 179.97438 * 26 25 24 45 45 H 1.07999 * 120.07748 * 179.97438 * 27 26 25 46 46 H 1.09002 * 109.71649 * 117.78528 * 28 16 15 47 47 H 1.09001 * 109.71495 * 238.38475 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 7 4.0011 -2.5790 -0.0022 11 6 3.7306 -3.2374 1.2928 12 6 4.9338 -4.1882 1.5143 13 6 6.1020 -3.3463 0.9467 14 1 6.5285 -2.6646 1.6824 15 6 7.1506 -4.2748 0.3180 16 7 6.7149 -4.5478 -1.0554 17 6 7.1602 -5.5590 -1.8271 18 8 6.7313 -5.6962 -2.9561 19 7 8.0810 -6.4181 -1.3469 20 6 8.5266 -7.4290 -2.1189 21 8 8.0979 -7.5663 -3.2476 22 6 9.5358 -8.3713 -1.5922 23 6 10.0340 -8.2137 -0.2975 24 6 10.9716 -9.1004 0.1900 25 6 11.4270 -10.1372 -0.6052 26 6 10.9417 -10.2957 -1.8912 27 6 9.9999 -9.4194 -2.3893 28 6 5.7200 -3.5506 -1.4581 29 6 5.4676 -2.6129 -0.2647 30 1 5.9048 -1.6267 -0.4208 31 1 -0.4851 0.8401 0.0004 32 1 3.8752 -0.6804 0.8888 33 1 3.8745 -0.6801 -0.8911 34 1 2.8021 -3.8061 1.2424 35 1 3.6802 -2.4971 2.0913 36 1 4.8095 -5.1135 0.9517 37 1 5.0795 -4.3939 2.5747 38 1 7.2074 -5.2061 0.8815 39 1 8.1251 -3.7867 0.3084 40 1 8.4229 -6.3088 -0.4459 41 1 9.6823 -7.4025 0.3227 42 1 11.3545 -8.9823 1.1929 43 1 12.1647 -10.8256 -0.2204 44 1 11.3016 -11.1068 -2.5068 45 1 9.6222 -9.5440 -3.3934 46 1 6.0970 -2.9759 -2.3041 47 1 4.7916 -4.0492 -1.7367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277941318.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:06 Heat of formation + Delta-G solvation = -33.122769 kcal Electronic energy + Delta-G solvation = -29414.907727 eV Core-core repulsion = 25369.247593 eV Total energy + Delta-G solvation = -4045.660134 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.57745 -41.18341 -39.97252 -38.82351 -36.90881 -35.89809 -34.81748 -33.00374 -32.28922 -31.90042 -30.86360 -29.88530 -27.75153 -26.18037 -24.57191 -23.75775 -23.45955 -22.16892 -21.86249 -21.31917 -20.89271 -19.88470 -18.93121 -18.41183 -17.64139 -17.47291 -17.00987 -16.64199 -16.28780 -16.16109 -15.87319 -15.59396 -15.50335 -15.24358 -14.95587 -14.78169 -14.54937 -14.41996 -14.26858 -13.98842 -13.68371 -13.57094 -13.46338 -13.14141 -12.95299 -12.73446 -12.35546 -12.16211 -12.04915 -12.04537 -11.84456 -11.79372 -11.76730 -11.63871 -11.44409 -11.40523 -10.97181 -10.78512 -10.00984 -9.96049 -9.74245 -9.08068 -8.28164 -6.32263 -0.29857 0.41054 1.08107 1.22129 1.35222 1.37443 1.47308 2.13672 2.34575 2.53587 2.87057 3.05191 3.07544 3.42532 3.44181 3.52533 3.86196 3.88217 3.99558 4.15250 4.23620 4.25153 4.32015 4.44766 4.45406 4.49887 4.54186 4.65498 4.67876 4.79165 4.82101 4.88266 4.89863 4.94890 4.97135 5.04737 5.07479 5.13976 5.22266 5.27336 5.37630 5.41734 5.51215 5.54884 5.61006 5.93556 5.98767 6.28395 6.34307 6.61374 6.74753 6.89910 7.17955 7.31599 8.88931 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.027406 B = 0.002097 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.415626 B =13347.592542 C =13776.371628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.003 3.997 3 Si 0.952 3.048 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.241 1.241 7 C -0.517 4.517 8 H 0.029 0.971 9 C 0.169 3.831 10 N -0.536 5.536 11 C 0.055 3.945 12 C -0.110 4.110 13 C -0.104 4.104 14 H 0.135 0.865 15 C 0.100 3.900 16 N -0.614 5.614 17 C 0.708 3.292 18 O -0.590 6.590 19 N -0.664 5.664 20 C 0.562 3.438 21 O -0.525 6.525 22 C -0.158 4.158 23 C -0.078 4.078 24 C -0.123 4.123 25 C -0.084 4.084 26 C -0.131 4.131 27 C -0.078 4.078 28 C 0.140 3.860 29 C 0.057 3.943 30 H 0.099 0.901 31 H 0.266 0.734 32 H 0.002 0.998 33 H 0.025 0.975 34 H 0.046 0.954 35 H 0.042 0.958 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.106 0.894 40 H 0.429 0.571 41 H 0.156 0.844 42 H 0.166 0.834 43 H 0.159 0.841 44 H 0.149 0.851 45 H 0.117 0.883 46 H 0.058 0.942 47 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.662 -17.346 9.646 37.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.194 4.194 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.164 1.164 7 C -0.555 4.555 8 H 0.047 0.953 9 C 0.041 3.959 10 N -0.260 5.260 11 C -0.073 4.073 12 C -0.148 4.148 13 C -0.123 4.123 14 H 0.153 0.847 15 C -0.021 4.021 16 N -0.352 5.352 17 C 0.410 3.590 18 O -0.466 6.466 19 N -0.332 5.332 20 C 0.352 3.648 21 O -0.398 6.398 22 C -0.161 4.161 23 C -0.097 4.097 24 C -0.141 4.141 25 C -0.101 4.101 26 C -0.149 4.149 27 C -0.097 4.097 28 C 0.016 3.984 29 C -0.052 4.052 30 H 0.117 0.883 31 H 0.075 0.925 32 H 0.019 0.981 33 H 0.043 0.957 34 H 0.064 0.936 35 H 0.061 0.939 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.270 0.730 41 H 0.174 0.826 42 H 0.183 0.817 43 H 0.177 0.823 44 H 0.167 0.833 45 H 0.135 0.865 46 H 0.076 0.924 47 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 30.683 -17.728 7.722 36.268 hybrid contribution -0.680 1.424 0.180 1.589 sum 30.003 -16.303 7.902 35.049 Atomic orbital electron populations 1.70069 1.08353 1.28109 1.52661 1.25945 0.95653 1.03462 0.94356 0.85649 0.79609 0.78155 0.79101 1.19524 1.20889 1.16407 1.21270 0.91480 0.92946 1.49849 0.95265 1.20110 0.93957 0.86521 0.95288 1.63792 1.11789 1.17815 1.32576 1.22854 0.98700 0.96393 0.89361 1.22742 0.92373 0.97057 1.02639 1.23169 0.95314 0.97136 0.96699 0.84685 1.22268 0.98738 1.01213 0.79873 1.47363 1.43654 1.27964 1.16170 1.15727 0.79985 0.79562 0.83740 1.91048 1.60972 1.74539 1.19999 1.43747 1.40964 1.28106 1.20368 1.19103 0.81267 0.80054 0.84398 1.90888 1.56874 1.71867 1.20201 1.19664 1.00526 0.98231 0.97711 1.21646 0.95721 0.99719 0.92581 1.21582 0.96549 0.94203 1.01742 1.21902 0.97899 0.97276 0.93068 1.21441 0.96698 0.99485 0.97246 1.21381 0.95720 0.93135 0.99491 1.21595 0.90544 0.88909 0.97354 1.23448 0.88536 0.98498 0.94719 0.88305 0.92510 0.98065 0.95672 0.93563 0.93943 0.91813 0.87335 0.87584 0.87610 0.72952 0.82611 0.81658 0.82316 0.83310 0.86474 0.92383 0.93306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -60.27 13.96 21.45 0.30 -59.97 16 2 C 0.00 0.16 5.47 84.66 0.46 0.62 16 3 Si 0.95 43.49 27.47 68.60 1.88 45.37 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 6 H -0.24 -9.84 6.54 99.48 0.65 -9.19 16 7 C -0.52 -30.05 9.38 25.60 0.24 -29.81 16 8 H 0.03 1.93 8.03 -2.92 -0.02 1.91 16 9 C 0.17 7.78 3.49 85.56 0.30 8.08 16 10 N -0.54 -21.08 4.57 -857.79 -3.92 -25.00 16 11 C 0.05 1.88 6.17 86.80 0.54 2.42 16 12 C -0.11 -2.39 6.34 31.86 0.20 -2.19 16 13 C -0.10 -1.86 3.92 -9.27 -0.04 -1.90 16 14 H 0.14 1.68 8.14 -2.39 -0.02 1.66 16 15 C 0.10 1.31 5.70 86.53 0.49 1.81 16 16 N -0.61 -15.26 3.31 -836.79 -2.77 -18.02 16 17 C 0.71 21.51 8.41 179.06 1.51 23.01 16 18 O -0.59 -25.71 15.05 18.89 0.28 -25.43 16 19 N -0.66 -13.80 5.14 -443.19 -2.28 -16.08 16 20 C 0.56 14.46 7.71 86.77 0.67 15.13 16 21 O -0.52 -19.85 14.74 19.00 0.28 -19.57 16 22 C -0.16 -2.68 5.87 -20.09 -0.12 -2.79 16 23 C -0.08 -0.63 9.54 22.53 0.22 -0.41 16 24 C -0.12 -0.55 10.03 22.23 0.22 -0.33 16 25 C -0.08 -0.45 10.04 22.33 0.22 -0.23 16 26 C -0.13 -1.28 10.03 22.23 0.22 -1.06 16 27 C -0.08 -1.31 9.60 22.53 0.22 -1.10 16 28 C 0.14 4.43 6.51 86.67 0.56 4.99 16 29 C 0.06 1.64 3.62 45.54 0.16 1.80 16 30 H 0.10 2.63 7.75 -2.38 -0.02 2.61 16 31 H 0.27 15.69 8.31 -92.70 -0.77 14.92 16 32 H 0.00 0.08 6.89 -2.39 -0.02 0.06 16 33 H 0.03 1.15 7.44 -2.39 -0.02 1.14 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.04 1.49 7.60 -2.39 -0.02 1.47 16 36 H 0.06 1.52 7.93 -2.39 -0.02 1.50 16 37 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.11 0.71 7.33 -2.39 -0.02 0.69 16 39 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.43 4.07 5.31 -92.71 -0.49 3.58 16 41 H 0.16 0.16 6.41 -2.91 -0.02 0.14 16 42 H 0.17 -0.32 8.06 -2.91 -0.02 -0.34 16 43 H 0.16 -0.08 8.06 -2.91 -0.02 -0.10 16 44 H 0.15 0.84 8.06 -2.91 -0.02 0.81 16 45 H 0.12 2.35 7.65 -2.91 -0.02 2.33 16 46 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.05 1.93 7.84 -2.39 -0.02 1.91 16 Total: -1.00 -93.20 380.19 0.31 -92.89 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.44 Total: 7.78 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 6.08 Total: 18.04 kcal Atomic # 7 Polarization: -110.41 SS G_CDS: -8.67 Total: -119.08 kcal Atomic # 8 Polarization: -45.56 SS G_CDS: 0.56 Total: -45.00 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.88 Total: 45.37 kcal Total: -93.20 0.31 -92.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277941318.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.766 kcal (2) G-P(sol) polarization free energy of solvation -93.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds