Wall clock time and date at job start Wed Apr 1 2020 03:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00256 * 2 1 4 4 H 1.48499 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46702 * 299.99460 * 3 2 1 6 6 H 1.48500 * 109.46966 * 59.99401 * 3 2 1 7 7 C 1.37878 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00131 * 169.99970 * 7 2 1 9 9 C 1.50702 * 119.99864 * 350.00140 * 7 2 1 10 10 C 1.53001 * 115.55015 * 325.14966 * 9 7 2 11 11 N 1.46504 * 109.46786 * 306.41344 * 10 9 7 12 12 C 1.34783 * 119.99603 * 183.79093 * 11 10 9 13 13 O 1.21350 * 119.99793 * 354.28502 * 12 11 10 14 14 C 1.49449 * 119.99892 * 174.28729 * 12 11 10 15 15 O 1.21355 * 119.99995 * 4.97054 * 14 12 11 16 16 N 1.34778 * 120.00229 * 184.97731 * 14 12 11 17 17 C 1.46495 * 120.00020 * 180.02562 * 16 14 12 18 18 H 1.08990 * 109.47268 * 34.99736 * 17 16 14 19 19 C 1.50706 * 109.46859 * 155.00185 * 17 16 14 20 20 C 1.38674 * 120.41198 * 219.71704 * 19 17 16 21 21 C 1.38630 * 118.41735 * 179.77791 * 20 19 17 22 22 C 1.38230 * 119.15859 * 0.51945 * 21 20 19 23 23 N 1.31849 * 120.76668 * 359.71936 * 22 21 20 24 24 C 1.31889 * 121.72469 * 0.02562 * 23 22 21 25 25 C 1.53005 * 109.47087 * 274.99485 * 17 16 14 26 26 C 1.52992 * 117.49658 * 128.74974 * 25 17 16 27 27 C 1.52998 * 117.49398 * 60.08893 * 25 17 16 28 28 C 1.53001 * 117.50157 * 110.82046 * 9 7 2 29 29 C 1.53003 * 117.49765 * 179.48030 * 9 7 2 30 30 H 0.97000 * 119.99805 * 5.03004 * 1 2 3 31 31 H 1.08998 * 109.47200 * 186.41549 * 10 9 7 32 32 H 1.09000 * 109.47398 * 66.41287 * 10 9 7 33 33 H 0.96998 * 120.00293 * 4.06997 * 11 10 9 34 34 H 0.97005 * 119.99593 * 359.97438 * 16 14 12 35 35 H 1.08000 * 120.79267 * 0.02562 * 20 19 17 36 36 H 1.08003 * 120.42202 * 180.21895 * 21 20 19 37 37 H 1.08006 * 119.61703 * 179.74676 * 22 21 20 38 38 H 1.08005 * 119.61858 * 179.97438 * 24 23 22 39 39 H 1.09001 * 115.55117 * 274.42087 * 25 17 16 40 40 H 1.08995 * 117.50363 * 359.97438 * 26 25 17 41 41 H 1.08997 * 117.50181 * 145.02673 * 26 25 17 42 42 H 1.09001 * 117.49731 * 214.97905 * 27 25 17 43 43 H 1.08992 * 117.50251 * 359.97438 * 27 25 17 44 44 H 1.09001 * 117.50107 * 215.00353 * 28 9 7 45 45 H 1.08998 * 117.49464 * 0.02562 * 28 9 7 46 46 H 1.08997 * 117.50015 * 359.97427 * 29 9 7 47 47 H 1.09001 * 117.49506 * 144.97118 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0722 -1.2012 -0.1619 9 6 1.2681 -2.4891 0.2277 10 6 0.0907 -2.4167 1.2021 11 7 0.5405 -1.8344 2.4690 12 6 -0.3124 -1.7422 3.5086 13 8 -1.4788 -2.0445 3.3651 14 6 0.1785 -1.2675 4.8379 15 8 1.3220 -0.8797 4.9593 16 7 -0.6487 -1.2703 5.9020 17 6 -0.1676 -0.8045 7.2050 18 1 0.5358 0.0155 7.0606 19 6 -1.3347 -0.3259 8.0296 20 6 -1.2182 0.8079 8.8194 21 6 -2.3193 1.2137 9.5575 22 6 -3.4849 0.4738 9.4905 23 7 -3.5580 -0.6023 8.7322 24 6 -2.5324 -1.0148 8.0129 25 6 0.5323 -1.9550 7.9313 26 6 1.9341 -1.6921 8.4849 27 6 1.7519 -2.5811 7.2521 28 6 1.1467 -3.4500 -0.9567 29 6 2.0875 -3.7811 0.2046 30 1 -0.4850 0.8368 -0.0737 31 1 -0.2957 -3.4201 1.3803 32 1 -0.6963 -1.7947 0.7754 33 1 1.4508 -1.5116 2.5583 34 1 -1.5628 -1.5800 5.8049 35 1 -0.2931 1.3639 8.8556 36 1 -2.2656 2.0941 10.1808 37 1 -4.3460 0.7809 10.0657 38 1 -2.6297 -1.9014 7.4038 39 1 -0.1193 -2.6152 8.5037 40 1 2.3580 -0.6998 8.3313 41 1 2.2050 -2.1797 9.4213 42 1 1.9030 -3.6533 7.3781 43 1 2.0554 -2.1738 6.2878 44 1 0.2281 -4.0305 -1.0418 45 1 1.5999 -3.1456 -1.9001 46 1 3.1590 -3.6944 0.0246 47 1 1.7879 -4.5792 0.8838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327108873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:12 Heat of formation + Delta-G solvation = 22.091499 kcal Electronic energy + Delta-G solvation = -29878.499624 eV Core-core repulsion = 25835.233760 eV Total energy + Delta-G solvation = -4043.265864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.94873 -39.97327 -38.43233 -37.16312 -36.69080 -34.76533 -33.23327 -32.73994 -32.21456 -31.52158 -27.63574 -26.49208 -25.51908 -24.06715 -23.22397 -22.71042 -22.35743 -21.26482 -20.46056 -19.86279 -19.39928 -18.19762 -17.34713 -16.93991 -16.36778 -16.27187 -15.89835 -15.61555 -15.24243 -14.85150 -14.64879 -14.56015 -14.37215 -13.95943 -13.82625 -13.41978 -13.35317 -12.93340 -12.87512 -12.64326 -12.20983 -12.10143 -11.83542 -11.60050 -11.50346 -11.12131 -11.04638 -10.80923 -10.53096 -10.51083 -10.48343 -10.30746 -10.09419 -9.71795 -9.67422 -9.38671 -9.19901 -9.12374 -8.99554 -8.88060 -8.36149 -8.02052 -6.11705 -4.21693 0.74552 0.96191 1.90309 2.70068 3.21258 3.31849 3.34538 3.49277 3.65257 3.78989 4.03660 4.17579 4.28748 4.36620 4.52449 4.59813 4.71195 4.76085 4.85638 4.89445 4.95848 5.04358 5.18536 5.22558 5.38955 5.45849 5.48911 5.56699 5.75966 5.83819 5.90801 5.94618 6.00348 6.18895 6.23570 6.33996 6.36247 6.47992 6.52740 6.63356 6.82006 6.99015 7.16449 7.23502 7.36566 7.48716 7.66573 7.85870 7.95550 8.25777 8.33367 8.75800 8.79270 9.40120 10.85223 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012983 B = 0.002940 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.154744 B = 9521.736415 C = 9847.061492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.075 3.925 3 Si 0.891 3.109 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.499 4.499 8 H 0.064 0.936 9 C 0.036 3.964 10 C 0.158 3.842 11 N -0.648 5.648 12 C 0.493 3.507 13 O -0.544 6.544 14 C 0.514 3.486 15 O -0.517 6.517 16 N -0.702 5.702 17 C 0.221 3.779 18 H 0.102 0.898 19 C -0.138 4.138 20 C -0.059 4.059 21 C -0.170 4.170 22 C 0.097 3.903 23 N -0.479 5.479 24 C 0.109 3.891 25 C -0.171 4.171 26 C -0.168 4.168 27 C -0.177 4.177 28 C -0.194 4.194 29 C -0.211 4.211 30 H 0.264 0.736 31 H 0.033 0.967 32 H 0.116 0.884 33 H 0.413 0.587 34 H 0.411 0.589 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.093 0.907 42 H 0.091 0.909 43 H 0.121 0.879 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.077 0.923 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.038 -0.270 19.369 19.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.207 1.207 7 C -0.536 4.536 8 H 0.082 0.918 9 C 0.035 3.965 10 C 0.036 3.964 11 N -0.297 5.297 12 C 0.272 3.728 13 O -0.423 6.423 14 C 0.297 3.703 15 O -0.392 6.392 16 N -0.356 5.356 17 C 0.116 3.884 18 H 0.120 0.880 19 C -0.140 4.140 20 C -0.086 4.086 21 C -0.190 4.190 22 C -0.060 4.060 23 N -0.187 5.187 24 C -0.049 4.049 25 C -0.190 4.190 26 C -0.205 4.205 27 C -0.214 4.214 28 C -0.232 4.232 29 C -0.248 4.248 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.134 0.866 33 H 0.250 0.750 34 H 0.248 0.752 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.174 0.826 38 H 0.173 0.827 39 H 0.124 0.876 40 H 0.114 0.886 41 H 0.111 0.889 42 H 0.109 0.891 43 H 0.139 0.861 44 H 0.086 0.914 45 H 0.099 0.901 46 H 0.095 0.905 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.969 -0.560 19.340 19.574 hybrid contribution 1.199 1.356 -0.024 1.810 sum -1.769 0.796 19.316 19.413 Atomic orbital electron populations 1.69825 1.05908 1.26987 1.47806 1.24978 0.94802 0.99182 0.93988 0.86536 0.80355 0.83477 0.77791 1.19499 1.20940 1.20713 1.20546 0.94028 0.88749 1.50311 0.91767 1.19167 0.94007 0.89291 0.94051 1.21215 0.98817 0.95456 0.80950 1.45696 1.15389 1.57290 1.11320 1.19721 0.86591 0.81306 0.85215 1.90698 1.16556 1.50766 1.84329 1.20629 0.85583 0.78307 0.85817 1.90673 1.18044 1.45484 1.85032 1.45850 1.16307 1.65684 1.07754 1.19277 0.92643 0.95772 0.80716 0.87998 1.20828 0.96495 0.97027 0.99681 1.21458 0.99091 0.94328 0.93690 1.22155 0.94210 1.01604 1.01023 1.22843 0.97337 0.90613 0.95212 1.67734 1.30539 1.14297 1.06167 1.22596 0.87996 0.98640 0.95624 1.22618 0.91042 1.00861 1.04477 1.22933 0.97655 1.01824 0.98113 1.23341 1.00144 0.98959 0.98973 1.22928 0.99568 1.06439 0.94289 1.22977 0.97062 1.01817 1.02965 0.92595 0.94897 0.86611 0.75036 0.75211 0.84477 0.84497 0.82629 0.82746 0.87638 0.88572 0.88872 0.89081 0.86115 0.91428 0.90074 0.90462 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.07 10.72 55.43 0.59 -22.48 16 2 C 0.08 1.93 5.13 -17.82 -0.09 1.83 16 3 Si 0.89 20.35 29.55 -169.99 -5.02 15.32 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.50 -12.65 8.27 -34.44 -0.28 -12.94 16 8 H 0.06 1.64 7.83 -52.49 -0.41 1.23 16 9 C 0.04 0.82 2.00 -155.66 -0.31 0.51 16 10 C 0.16 3.62 4.73 -4.04 -0.02 3.60 16 11 N -0.65 -13.94 5.27 -60.73 -0.32 -14.26 16 12 C 0.49 9.96 7.88 -11.58 -0.09 9.87 16 13 O -0.54 -11.86 16.50 5.50 0.09 -11.77 16 14 C 0.51 8.82 7.22 -11.59 -0.08 8.74 16 15 O -0.52 -9.47 13.51 5.49 0.07 -9.39 16 16 N -0.70 -9.55 5.00 -55.36 -0.28 -9.82 16 17 C 0.22 2.50 2.49 -69.08 -0.17 2.33 16 18 H 0.10 1.25 7.23 -51.93 -0.38 0.87 16 19 C -0.14 -1.40 4.94 -104.48 -0.52 -1.92 16 20 C -0.06 -0.51 9.82 -39.28 -0.39 -0.90 16 21 C -0.17 -1.31 10.11 -39.44 -0.40 -1.70 16 22 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 23 N -0.48 -5.40 10.36 -13.25 -0.14 -5.54 16 24 C 0.11 1.17 10.23 -17.55 -0.18 0.99 16 25 C -0.17 -1.78 5.34 -90.62 -0.48 -2.27 16 26 C -0.17 -1.63 10.18 -26.70 -0.27 -1.90 16 27 C -0.18 -2.08 9.74 -26.69 -0.26 -2.34 16 28 C -0.19 -4.15 9.96 -26.69 -0.27 -4.42 16 29 C -0.21 -4.31 9.92 -26.69 -0.26 -4.58 16 30 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 31 H 0.03 0.72 8.08 -51.93 -0.42 0.30 16 32 H 0.12 3.02 6.03 -51.93 -0.31 2.70 16 33 H 0.41 8.99 7.40 -40.82 -0.30 8.69 16 34 H 0.41 5.31 6.38 -40.82 -0.26 5.05 16 35 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 37 H 0.16 0.94 8.06 -52.48 -0.42 0.52 16 38 H 0.16 1.51 6.93 -52.48 -0.36 1.15 16 39 H 0.11 1.02 8.11 -51.93 -0.42 0.60 16 40 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 41 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.12 1.76 5.02 -51.93 -0.26 1.50 16 44 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 46 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 47 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 LS Contribution 393.79 15.07 5.93 5.93 Total: -1.00 -28.99 393.79 -9.83 -38.81 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -6.49 Total: 17.62 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -4.28 Total: -4.43 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.14 Total: -52.11 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: 0.16 Total: -21.16 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -28.99 -9.83 -38.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327108873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.904 kcal (2) G-P(sol) polarization free energy of solvation -28.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds