Wall clock time and date at job start Wed Apr 1 2020 03:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86806 * 120.00256 * 2 1 4 4 H 1.48499 * 109.47272 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46702 * 299.99460 * 3 2 1 6 6 H 1.48500 * 109.46966 * 59.99401 * 3 2 1 7 7 C 1.37878 * 120.00099 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00131 * 169.99970 * 7 2 1 9 9 C 1.50702 * 119.99864 * 350.00140 * 7 2 1 10 10 C 1.53001 * 115.55015 * 325.14966 * 9 7 2 11 11 N 1.46504 * 109.46786 * 306.41344 * 10 9 7 12 12 C 1.34783 * 119.99603 * 183.79093 * 11 10 9 13 13 O 1.21350 * 119.99793 * 354.28502 * 12 11 10 14 14 C 1.49449 * 119.99892 * 174.28729 * 12 11 10 15 15 O 1.21355 * 119.99995 * 4.97054 * 14 12 11 16 16 N 1.34778 * 120.00229 * 184.97731 * 14 12 11 17 17 C 1.46495 * 120.00020 * 180.02562 * 16 14 12 18 18 H 1.08990 * 109.47268 * 34.99736 * 17 16 14 19 19 C 1.50706 * 109.46859 * 155.00185 * 17 16 14 20 20 C 1.38674 * 120.41198 * 219.71704 * 19 17 16 21 21 C 1.38630 * 118.41735 * 179.77791 * 20 19 17 22 22 C 1.38230 * 119.15859 * 0.51945 * 21 20 19 23 23 N 1.31849 * 120.76668 * 359.71936 * 22 21 20 24 24 C 1.31889 * 121.72469 * 0.02562 * 23 22 21 25 25 C 1.53005 * 109.47087 * 274.99485 * 17 16 14 26 26 C 1.52992 * 117.49658 * 128.74974 * 25 17 16 27 27 C 1.52998 * 117.49398 * 60.08893 * 25 17 16 28 28 C 1.53001 * 117.50157 * 110.82046 * 9 7 2 29 29 C 1.53003 * 117.49765 * 179.48030 * 9 7 2 30 30 H 0.97000 * 119.99805 * 5.03004 * 1 2 3 31 31 H 1.08998 * 109.47200 * 186.41549 * 10 9 7 32 32 H 1.09000 * 109.47398 * 66.41287 * 10 9 7 33 33 H 0.96998 * 120.00293 * 4.06997 * 11 10 9 34 34 H 0.97005 * 119.99593 * 359.97438 * 16 14 12 35 35 H 1.08000 * 120.79267 * 0.02562 * 20 19 17 36 36 H 1.08003 * 120.42202 * 180.21895 * 21 20 19 37 37 H 1.08006 * 119.61703 * 179.74676 * 22 21 20 38 38 H 1.08005 * 119.61858 * 179.97438 * 24 23 22 39 39 H 1.09001 * 115.55117 * 274.42087 * 25 17 16 40 40 H 1.08995 * 117.50363 * 359.97438 * 26 25 17 41 41 H 1.08997 * 117.50181 * 145.02673 * 26 25 17 42 42 H 1.09001 * 117.49731 * 214.97905 * 27 25 17 43 43 H 1.08992 * 117.50251 * 359.97438 * 27 25 17 44 44 H 1.09001 * 117.50107 * 215.00353 * 28 9 7 45 45 H 1.08998 * 117.49464 * 0.02562 * 28 9 7 46 46 H 1.08997 * 117.50015 * 359.97427 * 29 9 7 47 47 H 1.09001 * 117.49506 * 144.97118 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0722 -1.2012 -0.1619 9 6 1.2681 -2.4891 0.2277 10 6 0.0907 -2.4167 1.2021 11 7 0.5405 -1.8344 2.4690 12 6 -0.3124 -1.7422 3.5086 13 8 -1.4788 -2.0445 3.3651 14 6 0.1785 -1.2675 4.8379 15 8 1.3220 -0.8797 4.9593 16 7 -0.6487 -1.2703 5.9020 17 6 -0.1676 -0.8045 7.2050 18 1 0.5358 0.0155 7.0606 19 6 -1.3347 -0.3259 8.0296 20 6 -1.2182 0.8079 8.8194 21 6 -2.3193 1.2137 9.5575 22 6 -3.4849 0.4738 9.4905 23 7 -3.5580 -0.6023 8.7322 24 6 -2.5324 -1.0148 8.0129 25 6 0.5323 -1.9550 7.9313 26 6 1.9341 -1.6921 8.4849 27 6 1.7519 -2.5811 7.2521 28 6 1.1467 -3.4500 -0.9567 29 6 2.0875 -3.7811 0.2046 30 1 -0.4850 0.8368 -0.0737 31 1 -0.2957 -3.4201 1.3803 32 1 -0.6963 -1.7947 0.7754 33 1 1.4508 -1.5116 2.5583 34 1 -1.5628 -1.5800 5.8049 35 1 -0.2931 1.3639 8.8556 36 1 -2.2656 2.0941 10.1808 37 1 -4.3460 0.7809 10.0657 38 1 -2.6297 -1.9014 7.4038 39 1 -0.1193 -2.6152 8.5037 40 1 2.3580 -0.6998 8.3313 41 1 2.2050 -2.1797 9.4213 42 1 1.9030 -3.6533 7.3781 43 1 2.0554 -2.1738 6.2878 44 1 0.2281 -4.0305 -1.0418 45 1 1.5999 -3.1456 -1.9001 46 1 3.1590 -3.6944 0.0246 47 1 1.7879 -4.5792 0.8838 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327108873.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:33:10 Heat of formation + Delta-G solvation = 4.668038 kcal Electronic energy + Delta-G solvation = -29879.255162 eV Core-core repulsion = 25835.233760 eV Total energy + Delta-G solvation = -4044.021402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.00170 -41.08803 -39.83242 -38.49723 -38.19969 -35.85697 -34.80892 -34.15770 -33.56618 -32.35269 -28.88329 -27.94979 -27.38212 -24.95741 -24.40626 -23.53110 -23.19938 -22.94391 -21.44958 -21.26026 -21.17029 -19.67669 -18.29106 -18.09069 -17.89461 -17.32430 -17.12746 -16.76261 -16.60438 -16.44101 -16.13747 -15.74506 -15.46659 -15.30197 -14.90589 -14.74410 -14.38726 -14.34056 -14.01761 -13.74540 -13.61972 -13.43360 -13.15749 -12.93919 -12.81685 -12.73524 -12.67265 -12.30328 -12.26179 -12.05205 -11.46163 -11.35661 -11.32459 -11.09131 -10.81422 -10.71040 -10.56649 -10.44661 -10.32897 -10.18287 -9.99426 -9.81190 -8.06177 -6.20937 0.03637 0.27784 0.42457 1.37376 1.40347 1.44564 1.52379 2.21384 2.38975 2.61496 2.80748 2.93822 3.06549 3.27250 3.53969 3.61948 3.69116 3.79722 3.85033 4.00568 4.05437 4.10245 4.13187 4.22278 4.26647 4.49934 4.53018 4.62636 4.70698 4.75548 4.76738 4.80097 4.97461 4.98042 5.04567 5.07548 5.12901 5.20007 5.24455 5.27239 5.37408 5.48806 5.56199 5.59492 5.69465 5.89853 5.99151 6.34817 6.49986 6.76688 6.84875 6.96505 7.11496 7.42240 8.88306 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012983 B = 0.002940 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.154744 B = 9521.736415 C = 9847.061492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.287 1.287 7 C -0.507 4.507 8 H 0.058 0.942 9 C 0.005 3.995 10 C 0.170 3.830 11 N -0.653 5.653 12 C 0.489 3.511 13 O -0.563 6.563 14 C 0.520 3.480 15 O -0.530 6.530 16 N -0.686 5.686 17 C 0.224 3.776 18 H 0.095 0.905 19 C -0.146 4.146 20 C -0.064 4.064 21 C -0.161 4.161 22 C 0.089 3.911 23 N -0.508 5.508 24 C 0.094 3.906 25 C -0.166 4.166 26 C -0.149 4.149 27 C -0.197 4.197 28 C -0.192 4.192 29 C -0.187 4.187 30 H 0.259 0.741 31 H 0.039 0.961 32 H 0.083 0.917 33 H 0.411 0.589 34 H 0.414 0.586 35 H 0.157 0.843 36 H 0.170 0.830 37 H 0.182 0.818 38 H 0.154 0.846 39 H 0.116 0.884 40 H 0.097 0.903 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.553 0.200 21.577 21.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.163 4.163 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.213 1.213 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.005 3.995 10 C 0.046 3.954 11 N -0.301 5.301 12 C 0.269 3.731 13 O -0.444 6.444 14 C 0.301 3.699 15 O -0.407 6.407 16 N -0.339 5.339 17 C 0.120 3.880 18 H 0.113 0.887 19 C -0.148 4.148 20 C -0.090 4.090 21 C -0.181 4.181 22 C -0.068 4.068 23 N -0.217 5.217 24 C -0.063 4.063 25 C -0.186 4.186 26 C -0.187 4.187 27 C -0.234 4.234 28 C -0.230 4.230 29 C -0.224 4.224 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.247 0.753 34 H 0.252 0.748 35 H 0.174 0.826 36 H 0.188 0.812 37 H 0.199 0.801 38 H 0.171 0.829 39 H 0.134 0.866 40 H 0.116 0.884 41 H 0.132 0.868 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.098 0.902 45 H 0.095 0.905 46 H 0.101 0.899 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.485 -0.100 21.568 21.711 hybrid contribution 1.005 1.205 -0.658 1.702 sum -1.480 1.106 20.909 20.991 Atomic orbital electron populations 1.69969 1.06837 1.27048 1.49028 1.25502 0.95299 1.01451 0.94050 0.85759 0.79619 0.80604 0.77283 1.18927 1.20873 1.21309 1.20736 0.93836 0.89964 1.49886 0.92389 1.19221 0.95098 0.89727 0.95501 1.20910 0.97949 0.95008 0.81486 1.45655 1.15405 1.57652 1.11357 1.20280 0.86152 0.80485 0.86197 1.90675 1.17320 1.51467 1.84959 1.20008 0.85693 0.78805 0.85359 1.90677 1.18473 1.46490 1.85027 1.45841 1.15913 1.64256 1.07884 1.19382 0.93181 0.95921 0.79527 0.88671 1.20704 0.95732 0.98004 1.00373 1.21777 1.00351 0.93708 0.93153 1.22506 0.93105 1.02053 1.00389 1.23379 0.98797 0.89934 0.94698 1.67730 1.30984 1.15747 1.07201 1.22625 0.88390 0.99090 0.96194 1.22602 0.91261 1.00466 1.04221 1.23018 0.96333 1.01465 0.97839 1.23251 1.01822 0.99666 0.98677 1.22937 1.00471 1.05712 0.93917 1.22977 0.97053 1.00257 1.02089 0.93090 0.94267 0.89889 0.75288 0.74799 0.82585 0.81208 0.80146 0.82911 0.86621 0.88438 0.86759 0.88383 0.88914 0.90206 0.90519 0.89896 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.30 10.72 21.45 0.23 -48.07 16 2 C 0.04 2.01 5.13 84.66 0.43 2.45 16 3 Si 0.94 42.06 29.55 68.60 2.03 44.09 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 6 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 7 C -0.51 -25.80 8.27 25.60 0.21 -25.59 16 8 H 0.06 2.96 7.83 -2.91 -0.02 2.94 16 9 C 0.01 0.24 2.00 -52.93 -0.11 0.13 16 10 C 0.17 7.90 4.73 86.38 0.41 8.31 16 11 N -0.65 -28.62 5.27 -464.39 -2.45 -31.06 16 12 C 0.49 20.16 7.88 87.27 0.69 20.84 16 13 O -0.56 -25.11 16.50 -3.25 -0.05 -25.17 16 14 C 0.52 18.06 7.22 87.27 0.63 18.69 16 15 O -0.53 -19.61 13.51 -3.26 -0.04 -19.65 16 16 N -0.69 -18.64 5.00 -447.43 -2.24 -20.88 16 17 C 0.22 4.88 2.49 44.25 0.11 4.99 16 18 H 0.10 2.24 7.23 -2.39 -0.02 2.22 16 19 C -0.15 -2.78 4.94 -19.77 -0.10 -2.87 16 20 C -0.06 -0.95 9.82 22.47 0.22 -0.73 16 21 C -0.16 -1.98 10.11 22.36 0.23 -1.75 16 22 C 0.09 1.37 11.18 84.69 0.95 2.31 16 23 N -0.51 -10.92 10.36 -195.84 -2.03 -12.95 16 24 C 0.09 1.96 10.23 84.67 0.87 2.82 16 25 C -0.17 -3.25 5.34 -10.79 -0.06 -3.31 16 26 C -0.15 -2.60 10.18 30.62 0.31 -2.29 16 27 C -0.20 -4.49 9.74 30.62 0.30 -4.20 16 28 C -0.19 -8.07 9.96 30.62 0.30 -7.76 16 29 C -0.19 -7.36 9.92 30.62 0.30 -7.06 16 30 H 0.26 13.75 8.32 -92.71 -0.77 12.98 16 31 H 0.04 1.73 8.08 -2.39 -0.02 1.71 16 32 H 0.08 4.46 6.03 -2.39 -0.01 4.44 16 33 H 0.41 18.25 7.40 -92.71 -0.69 17.57 16 34 H 0.41 10.80 6.38 -92.70 -0.59 10.21 16 35 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 36 H 0.17 0.93 8.06 -2.91 -0.02 0.90 16 37 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 38 H 0.15 3.02 6.93 -2.91 -0.02 3.00 16 39 H 0.12 2.05 8.11 -2.39 -0.02 2.03 16 40 H 0.10 1.69 8.05 -2.39 -0.02 1.67 16 41 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.09 2.72 5.02 -2.39 -0.01 2.71 16 44 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 45 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 46 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 47 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 Total: -1.00 -62.67 393.79 0.89 -61.78 By element: Atomic # 1 Polarization: 47.19 SS G_CDS: -0.26 Total: 46.93 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: 5.70 Total: 4.99 kcal Atomic # 7 Polarization: -106.48 SS G_CDS: -6.48 Total: -112.96 kcal Atomic # 8 Polarization: -44.72 SS G_CDS: -0.10 Total: -44.82 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.03 Total: 44.09 kcal Total: -62.67 0.89 -61.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327108873.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.452 kcal (2) G-P(sol) polarization free energy of solvation -62.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds