Wall clock time and date at job start Wed Apr 1 2020 03:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 120.00402 * 2 1 4 4 H 1.48500 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47141 * 299.99761 * 3 2 1 6 6 H 1.48498 * 109.47226 * 59.99892 * 3 2 1 7 7 C 1.39935 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99668 * 174.46086 * 7 2 1 9 9 C 1.41409 * 120.00167 * 354.46427 * 7 2 1 10 10 C 1.40773 * 120.21013 * 325.76977 * 9 7 2 11 11 C 1.37638 * 119.88630 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.32086 * 359.97438 * 11 10 9 13 13 C 1.39245 * 120.42581 * 0.25295 * 12 11 10 14 14 N 1.39960 * 119.94533 * 179.74671 * 13 12 11 15 15 C 1.34771 * 120.00210 * 214.56621 * 14 13 12 16 16 O 1.21592 * 119.99620 * 5.71271 * 15 14 13 17 17 N 1.34773 * 120.00422 * 185.70792 * 15 14 13 18 18 C 1.47426 * 125.64738 * 359.69483 * 17 15 14 19 19 C 1.55128 * 104.72362 * 155.81192 * 18 17 15 20 20 C 1.55152 * 101.48494 * 37.29815 * 19 18 17 21 21 H 1.08995 * 110.72718 * 82.69318 * 20 19 18 22 22 N 1.46499 * 110.87171 * 205.89769 * 20 19 18 23 23 C 1.46765 * 124.34994 * 234.78666 * 22 20 19 24 24 C 1.54660 * 105.38455 * 162.85314 * 23 22 20 25 25 C 1.54634 * 101.68237 * 25.76602 * 24 23 22 26 26 C 1.34421 * 124.35030 * 55.08914 * 22 20 19 27 27 O 1.21277 * 124.94112 * 0.42613 * 26 22 20 28 28 C 1.47026 * 125.64932 * 179.97438 * 17 15 14 29 29 C 1.38278 * 120.10805 * 359.49108 * 13 12 11 30 30 H 0.97004 * 119.99472 * 0.02562 * 1 2 3 31 31 H 1.08009 * 120.05885 * 359.95579 * 10 9 7 32 32 H 1.08005 * 119.84099 * 179.97438 * 11 10 9 33 33 H 1.07998 * 119.78424 * 179.97438 * 12 11 10 34 34 H 0.97001 * 119.99723 * 34.56322 * 14 13 12 35 35 H 1.09004 * 110.36711 * 274.74495 * 18 17 15 36 36 H 1.08999 * 110.36536 * 37.06651 * 18 17 15 37 37 H 1.09002 * 111.19242 * 279.19126 * 19 18 17 38 38 H 1.09004 * 110.90527 * 155.27208 * 19 18 17 39 39 H 1.09004 * 110.24883 * 281.98450 * 23 22 20 40 40 H 1.09003 * 110.24469 * 43.98227 * 23 22 20 41 41 H 1.08998 * 111.19427 * 267.59511 * 24 23 22 42 42 H 1.08999 * 110.85650 * 143.78699 * 24 23 22 43 43 H 1.08994 * 110.48695 * 216.30886 * 25 24 23 44 44 H 1.09007 * 110.59552 * 93.72141 * 25 24 23 45 45 H 1.09004 * 109.88084 * 300.44058 * 28 17 15 46 46 H 1.08992 * 109.87950 * 61.61064 * 28 17 15 47 47 H 1.07993 * 120.15858 * 180.23084 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7024 1.3462 -0.0006 5 1 1.8837 2.3964 -1.2126 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0841 -1.2142 -0.0897 9 6 1.3057 -2.4336 0.1192 10 6 0.1422 -2.5081 0.9081 11 6 -0.5364 -3.7005 1.0185 12 6 -0.0802 -4.8287 0.3564 13 6 1.0718 -4.7710 -0.4236 14 7 1.5266 -5.9183 -1.0838 15 6 2.8492 -6.1301 -1.2333 16 8 3.6483 -5.3806 -0.7059 17 7 3.2860 -7.1726 -1.9673 18 6 2.4312 -8.1585 -2.6533 19 6 3.3144 -8.7156 -3.8006 20 6 4.7083 -8.7651 -3.1211 21 1 4.8166 -9.6736 -2.5287 22 7 5.7782 -8.6675 -4.1171 23 6 6.8681 -9.6400 -4.2597 24 6 7.4667 -9.3827 -5.6624 25 6 7.1040 -7.8968 -5.8898 26 6 5.8910 -7.6727 -5.0141 27 8 5.1310 -6.7322 -5.1075 28 6 4.6940 -7.5183 -2.2118 29 6 1.7643 -3.5810 -0.5511 30 1 -0.4849 0.8401 -0.0004 31 1 -0.2174 -1.6312 1.4261 32 1 -1.4288 -3.7570 1.6243 33 1 -0.6191 -5.7600 0.4495 34 1 0.8899 -6.5609 -1.4338 35 1 2.1477 -8.9571 -1.9676 36 1 1.5437 -7.6735 -3.0597 37 1 3.3206 -8.0405 -4.6564 38 1 2.9872 -9.7131 -4.0940 39 1 7.6220 -9.4774 -3.4893 40 1 6.4777 -10.6558 -4.1980 41 1 6.9977 -10.0181 -6.4136 42 1 8.5475 -9.5236 -5.6549 43 1 6.8567 -7.7205 -6.9366 44 1 7.9242 -7.2499 -5.5783 45 1 5.1979 -6.6900 -2.7100 46 1 5.1898 -7.7426 -1.2674 47 1 2.6558 -3.5345 -1.1589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364135488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:36 Heat of formation + Delta-G solvation = -22.884889 kcal Electronic energy + Delta-G solvation = -29585.812871 eV Core-core repulsion = 25540.596685 eV Total energy + Delta-G solvation = -4045.216186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.04507 -39.88393 -37.91905 -36.77746 -36.52289 -34.30926 -33.22678 -32.66917 -30.34112 -29.69652 -28.81272 -27.91810 -27.49875 -25.17694 -23.86780 -22.39547 -22.19618 -21.21547 -20.73046 -19.31325 -19.21822 -18.07062 -17.35603 -17.31482 -16.73897 -15.84078 -15.52448 -15.38988 -15.12052 -14.56877 -14.45278 -14.24259 -14.16510 -13.99090 -13.62610 -13.38759 -13.06359 -13.00680 -12.94629 -12.76379 -12.43903 -12.06732 -11.94935 -11.93300 -11.83314 -11.55683 -11.41612 -11.29243 -11.06887 -11.04935 -10.84087 -10.35110 -10.10932 -9.85732 -9.57273 -9.35259 -9.14344 -9.03960 -8.89073 -8.47551 -7.27065 -6.78457 -6.51463 -4.25086 2.33746 2.42478 2.80469 2.93776 3.10791 3.18582 3.25510 3.28302 3.78195 3.94911 4.02732 4.09257 4.17286 4.31700 4.36889 4.51114 4.58207 4.72096 4.81773 4.92669 5.02709 5.05576 5.10749 5.26466 5.38103 5.39010 5.49475 5.52180 5.61310 5.72256 5.78200 5.85985 6.25359 6.31233 6.33206 6.45248 6.79715 6.88382 6.95150 7.12850 7.20391 7.36452 7.43595 7.78153 7.88872 7.92832 8.05889 8.23644 8.35053 8.48480 8.78536 9.00772 9.09444 9.13242 10.42233 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.002520 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.360899 B =11108.771404 C =12518.708680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.463 4.463 8 H 0.077 0.923 9 C 0.120 3.880 10 C -0.159 4.159 11 C -0.097 4.097 12 C -0.252 4.252 13 C 0.164 3.836 14 N -0.678 5.678 15 C 0.720 3.280 16 O -0.562 6.562 17 N -0.635 5.635 18 C 0.102 3.898 19 C -0.143 4.143 20 C 0.147 3.853 21 H 0.107 0.893 22 N -0.616 5.616 23 C 0.102 3.898 24 C -0.131 4.131 25 C -0.157 4.157 26 C 0.513 3.487 27 O -0.513 6.513 28 C 0.121 3.879 29 C -0.199 4.199 30 H 0.276 0.724 31 H 0.118 0.882 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.393 0.607 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.084 0.916 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.101 0.899 44 H 0.105 0.895 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.726 -23.270 -10.706 27.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.143 4.143 3 Si 0.736 3.264 4 H -0.185 1.185 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.494 4.494 8 H 0.095 0.905 9 C 0.117 3.883 10 C -0.179 4.179 11 C -0.116 4.116 12 C -0.274 4.274 13 C 0.072 3.928 14 N -0.325 5.325 15 C 0.422 3.578 16 O -0.437 6.437 17 N -0.376 5.376 18 C -0.022 4.022 19 C -0.182 4.182 20 C 0.043 3.957 21 H 0.125 0.875 22 N -0.351 5.351 23 C -0.020 4.020 24 C -0.169 4.169 25 C -0.197 4.197 26 C 0.300 3.700 27 O -0.387 6.387 28 C -0.004 4.004 29 C -0.221 4.221 30 H 0.087 0.913 31 H 0.136 0.864 32 H 0.111 0.889 33 H 0.107 0.893 34 H 0.227 0.773 35 H 0.087 0.913 36 H 0.095 0.905 37 H 0.112 0.888 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 10.676 -21.970 -10.291 26.506 hybrid contribution -0.024 0.272 -0.255 0.374 sum 10.651 -21.698 -10.547 26.372 Atomic orbital electron populations 1.69795 1.07242 1.28545 1.38372 1.25838 0.94872 1.00966 0.92582 0.86214 0.80840 0.81054 0.78274 1.18550 1.20122 1.19956 1.19558 0.94971 0.90002 1.44830 0.90522 1.17514 0.91298 0.91652 0.87796 1.21354 0.98589 0.96224 1.01692 1.20472 0.98569 0.93293 0.99301 1.20053 1.01228 0.98184 1.07897 1.17251 0.95794 0.84250 0.95489 1.42554 1.04780 1.24856 1.60316 1.15400 0.83059 0.80084 0.79258 1.90981 1.54079 1.46871 1.51772 1.47356 1.06797 1.29050 1.54397 1.22251 0.94635 0.91832 0.93437 1.23200 0.93582 1.02405 0.99042 1.21952 0.86354 0.98542 0.88834 0.87505 1.48249 1.26783 1.26019 1.34087 1.22157 0.89137 0.92965 0.97790 1.22617 1.02242 0.95695 0.96317 1.22361 0.97767 0.97987 1.01594 1.20963 0.86437 0.81502 0.81086 1.90816 1.46588 1.30931 1.70405 1.21940 0.82892 0.96922 0.98620 1.21142 1.03400 0.91780 1.05764 0.91315 0.86381 0.88946 0.89281 0.77314 0.91305 0.90509 0.88830 0.89698 0.90820 0.90226 0.89918 0.89105 0.88033 0.87696 0.90596 0.91369 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.31 10.96 55.55 0.61 -21.70 16 2 C 0.07 1.95 5.31 -17.34 -0.09 1.86 16 3 Si 0.91 20.35 29.56 -169.99 -5.03 15.32 16 4 H -0.26 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 7 C -0.46 -13.45 9.04 -37.74 -0.34 -13.79 16 8 H 0.08 2.22 7.85 -52.49 -0.41 1.81 16 9 C 0.12 3.49 5.50 -106.85 -0.59 2.90 16 10 C -0.16 -4.35 8.62 -38.84 -0.33 -4.68 16 11 C -0.10 -2.36 10.02 -39.69 -0.40 -2.76 16 12 C -0.25 -5.81 9.97 -39.10 -0.39 -6.20 16 13 C 0.16 3.99 6.24 -83.76 -0.52 3.47 16 14 N -0.68 -13.56 5.28 -14.27 -0.08 -13.64 16 15 C 0.72 14.94 8.20 -86.93 -0.71 14.23 16 16 O -0.56 -14.35 14.47 5.28 0.08 -14.27 16 17 N -0.64 -9.93 3.32 -176.09 -0.59 -10.51 16 18 C 0.10 1.10 6.54 -2.41 -0.02 1.08 16 19 C -0.14 -1.32 6.57 -24.47 -0.16 -1.48 16 20 C 0.15 1.33 3.62 -66.10 -0.24 1.09 16 21 H 0.11 0.65 8.10 -51.93 -0.42 0.23 16 22 N -0.62 -5.15 2.95 -162.65 -0.48 -5.63 16 23 C 0.10 0.44 7.33 -3.02 -0.02 0.42 16 24 C -0.13 -0.43 7.19 -25.00 -0.18 -0.61 16 25 C -0.16 -1.01 6.86 -26.74 -0.18 -1.19 16 26 C 0.51 5.60 7.07 -10.86 -0.08 5.53 16 27 O -0.51 -8.30 15.17 5.56 0.08 -8.21 16 28 C 0.12 1.66 6.36 -3.06 -0.02 1.64 16 29 C -0.20 -5.55 8.39 -38.69 -0.32 -5.88 16 30 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 31 H 0.12 3.31 6.46 -52.48 -0.34 2.97 16 32 H 0.09 1.96 8.06 -52.48 -0.42 1.54 16 33 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 34 H 0.39 6.25 7.37 -40.82 -0.30 5.95 16 35 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.08 0.82 7.38 -51.93 -0.38 0.43 16 37 H 0.09 1.14 6.34 -51.93 -0.33 0.81 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.21 8.14 -51.93 -0.42 -0.22 16 41 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.10 0.61 8.14 -51.92 -0.42 0.19 16 45 H 0.08 1.29 6.62 -51.93 -0.34 0.95 16 46 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.11 3.14 6.53 -52.49 -0.34 2.80 16 LS Contribution 380.22 15.07 5.73 5.73 Total: -1.00 -37.32 380.22 -10.92 -48.24 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: -6.66 Total: 9.04 kcal Atomic # 6 Polarization: 0.23 SS G_CDS: -4.60 Total: -4.37 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.53 Total: -51.48 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: 0.16 Total: -22.49 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.03 Total: 15.32 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -37.32 -10.92 -48.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364135488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.358 kcal (2) G-P(sol) polarization free energy of solvation -37.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds