Wall clock time and date at job start Wed Apr 1 2020 03:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86797 * 120.00402 * 2 1 4 4 H 1.48500 * 109.47143 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47141 * 299.99761 * 3 2 1 6 6 H 1.48498 * 109.47226 * 59.99892 * 3 2 1 7 7 C 1.39935 * 119.99582 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99668 * 174.46086 * 7 2 1 9 9 C 1.41409 * 120.00167 * 354.46427 * 7 2 1 10 10 C 1.40773 * 120.21013 * 325.76977 * 9 7 2 11 11 C 1.37638 * 119.88630 * 179.97438 * 10 9 7 12 12 C 1.38533 * 120.32086 * 359.97438 * 11 10 9 13 13 C 1.39245 * 120.42581 * 0.25295 * 12 11 10 14 14 N 1.39960 * 119.94533 * 179.74671 * 13 12 11 15 15 C 1.34771 * 120.00210 * 214.56621 * 14 13 12 16 16 O 1.21592 * 119.99620 * 5.71271 * 15 14 13 17 17 N 1.34773 * 120.00422 * 185.70792 * 15 14 13 18 18 C 1.47426 * 125.64738 * 359.69483 * 17 15 14 19 19 C 1.55128 * 104.72362 * 155.81192 * 18 17 15 20 20 C 1.55152 * 101.48494 * 37.29815 * 19 18 17 21 21 H 1.08995 * 110.72718 * 82.69318 * 20 19 18 22 22 N 1.46499 * 110.87171 * 205.89769 * 20 19 18 23 23 C 1.46765 * 124.34994 * 234.78666 * 22 20 19 24 24 C 1.54660 * 105.38455 * 162.85314 * 23 22 20 25 25 C 1.54634 * 101.68237 * 25.76602 * 24 23 22 26 26 C 1.34421 * 124.35030 * 55.08914 * 22 20 19 27 27 O 1.21277 * 124.94112 * 0.42613 * 26 22 20 28 28 C 1.47026 * 125.64932 * 179.97438 * 17 15 14 29 29 C 1.38278 * 120.10805 * 359.49108 * 13 12 11 30 30 H 0.97004 * 119.99472 * 0.02562 * 1 2 3 31 31 H 1.08009 * 120.05885 * 359.95579 * 10 9 7 32 32 H 1.08005 * 119.84099 * 179.97438 * 11 10 9 33 33 H 1.07998 * 119.78424 * 179.97438 * 12 11 10 34 34 H 0.97001 * 119.99723 * 34.56322 * 14 13 12 35 35 H 1.09004 * 110.36711 * 274.74495 * 18 17 15 36 36 H 1.08999 * 110.36536 * 37.06651 * 18 17 15 37 37 H 1.09002 * 111.19242 * 279.19126 * 19 18 17 38 38 H 1.09004 * 110.90527 * 155.27208 * 19 18 17 39 39 H 1.09004 * 110.24883 * 281.98450 * 23 22 20 40 40 H 1.09003 * 110.24469 * 43.98227 * 23 22 20 41 41 H 1.08998 * 111.19427 * 267.59511 * 24 23 22 42 42 H 1.08999 * 110.85650 * 143.78699 * 24 23 22 43 43 H 1.08994 * 110.48695 * 216.30886 * 25 24 23 44 44 H 1.09007 * 110.59552 * 93.72141 * 25 24 23 45 45 H 1.09004 * 109.88084 * 300.44058 * 28 17 15 46 46 H 1.08992 * 109.87950 * 61.61064 * 28 17 15 47 47 H 1.07993 * 120.15858 * 180.23084 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6176 0.0000 4 1 3.7024 1.3462 -0.0006 5 1 1.8837 2.3964 -1.2126 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0841 -1.2142 -0.0897 9 6 1.3057 -2.4336 0.1192 10 6 0.1422 -2.5081 0.9081 11 6 -0.5364 -3.7005 1.0185 12 6 -0.0802 -4.8287 0.3564 13 6 1.0718 -4.7710 -0.4236 14 7 1.5266 -5.9183 -1.0838 15 6 2.8492 -6.1301 -1.2333 16 8 3.6483 -5.3806 -0.7059 17 7 3.2860 -7.1726 -1.9673 18 6 2.4312 -8.1585 -2.6533 19 6 3.3144 -8.7156 -3.8006 20 6 4.7083 -8.7651 -3.1211 21 1 4.8166 -9.6736 -2.5287 22 7 5.7782 -8.6675 -4.1171 23 6 6.8681 -9.6400 -4.2597 24 6 7.4667 -9.3827 -5.6624 25 6 7.1040 -7.8968 -5.8898 26 6 5.8910 -7.6727 -5.0141 27 8 5.1310 -6.7322 -5.1075 28 6 4.6940 -7.5183 -2.2118 29 6 1.7643 -3.5810 -0.5511 30 1 -0.4849 0.8401 -0.0004 31 1 -0.2174 -1.6312 1.4261 32 1 -1.4288 -3.7570 1.6243 33 1 -0.6191 -5.7600 0.4495 34 1 0.8899 -6.5609 -1.4338 35 1 2.1477 -8.9571 -1.9676 36 1 1.5437 -7.6735 -3.0597 37 1 3.3206 -8.0405 -4.6564 38 1 2.9872 -9.7131 -4.0940 39 1 7.6220 -9.4774 -3.4893 40 1 6.4777 -10.6558 -4.1980 41 1 6.9977 -10.0181 -6.4136 42 1 8.5475 -9.5236 -5.6549 43 1 6.8567 -7.7205 -6.9366 44 1 7.9242 -7.2499 -5.5783 45 1 5.1979 -6.6900 -2.7100 46 1 5.1898 -7.7426 -1.2674 47 1 2.6558 -3.5345 -1.1589 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364135488.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:18:35 Heat of formation + Delta-G solvation = -48.760719 kcal Electronic energy + Delta-G solvation = -29586.934931 eV Core-core repulsion = 25540.596685 eV Total energy + Delta-G solvation = -4046.338246 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.98134 -41.25526 -39.46557 -38.29099 -37.36595 -36.21982 -34.91913 -33.80618 -31.76081 -31.30475 -30.17253 -28.93460 -28.41600 -27.26629 -25.10054 -23.15858 -23.01413 -22.72743 -22.61919 -20.92221 -20.05176 -19.73285 -18.98271 -18.13028 -17.56055 -17.32588 -17.08242 -16.74588 -16.47625 -16.24184 -16.02182 -15.67983 -14.95746 -14.91888 -14.74682 -14.62206 -14.35720 -14.20336 -14.07013 -13.96661 -13.72007 -13.54751 -13.34533 -13.01528 -12.93096 -12.86270 -12.71135 -12.66842 -12.37831 -12.20119 -12.10087 -11.99346 -11.78338 -11.55363 -11.27919 -11.12447 -10.83064 -10.70131 -9.81922 -9.72308 -9.34702 -8.74573 -8.54515 -6.42984 0.87078 0.96638 1.32838 1.36255 1.44914 1.48859 1.54665 2.01602 2.11789 2.21347 2.75671 2.95008 3.33644 3.45369 3.54338 3.66538 3.68407 3.96013 4.07721 4.11794 4.21360 4.27666 4.43970 4.50154 4.57415 4.58406 4.62381 4.71564 4.77775 4.83151 4.89787 4.97898 5.02348 5.06050 5.09628 5.10421 5.12490 5.25057 5.25972 5.32340 5.63089 5.71037 5.79310 5.99444 6.05410 6.11089 6.13147 6.35544 6.66307 6.87160 6.92334 6.98530 7.15292 7.48048 8.39568 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014840 B = 0.002520 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.360899 B =11108.771404 C =12518.708680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.270 1.270 5 H -0.263 1.263 6 H -0.255 1.255 7 C -0.509 4.509 8 H 0.055 0.945 9 C 0.089 3.911 10 C -0.181 4.181 11 C -0.091 4.091 12 C -0.235 4.235 13 C 0.170 3.830 14 N -0.666 5.666 15 C 0.710 3.290 16 O -0.622 6.622 17 N -0.631 5.631 18 C 0.093 3.907 19 C -0.134 4.134 20 C 0.156 3.844 21 H 0.155 0.845 22 N -0.613 5.613 23 C 0.096 3.904 24 C -0.117 4.117 25 C -0.156 4.156 26 C 0.495 3.505 27 O -0.582 6.582 28 C 0.115 3.885 29 C -0.230 4.230 30 H 0.287 0.713 31 H 0.105 0.895 32 H 0.132 0.868 33 H 0.138 0.862 34 H 0.416 0.584 35 H 0.110 0.890 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.130 0.870 39 H 0.083 0.917 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.115 0.885 43 H 0.103 0.897 44 H 0.107 0.893 45 H 0.030 0.970 46 H 0.070 0.930 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.207 -27.312 -10.991 31.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.194 1.194 5 H -0.187 1.187 6 H -0.179 1.179 7 C -0.540 4.540 8 H 0.073 0.927 9 C 0.086 3.914 10 C -0.201 4.201 11 C -0.110 4.110 12 C -0.257 4.257 13 C 0.076 3.924 14 N -0.315 5.315 15 C 0.412 3.588 16 O -0.502 6.502 17 N -0.369 5.369 18 C -0.028 4.028 19 C -0.172 4.172 20 C 0.053 3.947 21 H 0.172 0.828 22 N -0.346 5.346 23 C -0.025 4.025 24 C -0.154 4.154 25 C -0.196 4.196 26 C 0.285 3.715 27 O -0.462 6.462 28 C -0.010 4.010 29 C -0.252 4.252 30 H 0.098 0.902 31 H 0.123 0.877 32 H 0.149 0.851 33 H 0.156 0.844 34 H 0.254 0.746 35 H 0.128 0.872 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.148 0.852 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.114 0.886 42 H 0.133 0.867 43 H 0.122 0.878 44 H 0.125 0.875 45 H 0.048 0.952 46 H 0.088 0.912 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.153 -26.151 -10.618 29.995 hybrid contribution 0.145 1.349 -0.203 1.371 sum 10.297 -24.803 -10.821 28.953 Atomic orbital electron populations 1.69826 1.08338 1.30120 1.38066 1.26651 0.95863 1.03954 0.91415 0.85133 0.78687 0.76258 0.79367 1.19397 1.18722 1.17873 1.19673 0.94281 0.91887 1.48175 0.92679 1.17833 0.92605 0.92116 0.88824 1.21310 0.98908 0.97413 1.02462 1.20893 0.99051 0.92219 0.98851 1.20512 1.00079 0.99675 1.05408 1.17345 0.95565 0.84331 0.95132 1.42283 1.05183 1.24035 1.59962 1.15683 0.82748 0.80751 0.79585 1.90940 1.55498 1.49379 1.54385 1.47380 1.08652 1.28203 1.52678 1.22704 0.94129 0.91515 0.94469 1.23168 0.93356 1.03708 0.97011 1.22057 0.86806 0.97387 0.88496 0.82785 1.48441 1.27319 1.26111 1.32681 1.22527 0.88150 0.93219 0.98607 1.22663 1.03860 0.92861 0.96024 1.22409 0.95670 1.00807 1.00688 1.21840 0.86893 0.80932 0.81877 1.90773 1.49260 1.33704 1.72466 1.22133 0.81567 0.97824 0.99487 1.21026 1.03401 0.93758 1.07046 0.90235 0.87679 0.85064 0.84402 0.74595 0.87170 0.90561 0.92417 0.85174 0.89865 0.87109 0.88572 0.86657 0.87833 0.87459 0.95184 0.91200 0.90971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.31 10.96 21.82 0.24 -47.07 16 2 C 0.03 1.90 5.31 85.25 0.45 2.35 16 3 Si 0.98 43.32 29.56 68.60 2.03 45.35 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.26 -10.93 7.11 99.48 0.71 -10.22 16 6 H -0.25 -10.34 7.11 99.48 0.71 -9.64 16 7 C -0.51 -31.91 9.04 23.46 0.21 -31.70 16 8 H 0.05 3.52 7.85 -2.91 -0.02 3.50 16 9 C 0.09 5.49 5.50 -21.31 -0.12 5.37 16 10 C -0.18 -10.21 8.62 22.75 0.20 -10.01 16 11 C -0.09 -4.32 10.02 22.20 0.22 -4.09 16 12 C -0.24 -10.36 9.97 22.58 0.23 -10.14 16 13 C 0.17 8.39 6.24 38.09 0.24 8.63 16 14 N -0.67 -26.67 5.28 -317.33 -1.68 -28.35 16 15 C 0.71 30.74 8.20 179.06 1.47 32.21 16 16 O -0.62 -34.32 14.47 -4.00 -0.06 -34.37 16 17 N -0.63 -19.94 3.32 -829.30 -2.76 -22.70 16 18 C 0.09 1.79 6.54 86.93 0.57 2.36 16 19 C -0.13 -2.15 6.57 32.06 0.21 -1.94 16 20 C 0.16 2.47 3.62 46.18 0.17 2.64 16 21 H 0.15 1.07 8.10 -2.39 -0.02 1.05 16 22 N -0.61 -9.24 2.95 -787.10 -2.32 -11.56 16 23 C 0.10 0.46 7.33 86.89 0.64 1.10 16 24 C -0.12 -0.38 7.19 31.72 0.23 -0.15 16 25 C -0.16 -1.90 6.86 30.59 0.21 -1.69 16 26 C 0.49 11.18 7.07 87.90 0.62 11.80 16 27 O -0.58 -20.65 15.17 -3.02 -0.05 -20.70 16 28 C 0.11 3.24 6.36 86.73 0.55 3.79 16 29 C -0.23 -13.75 8.39 22.85 0.19 -13.56 16 30 H 0.29 14.55 8.30 -92.71 -0.77 13.78 16 31 H 0.11 6.10 6.46 -2.91 -0.02 6.08 16 32 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 33 H 0.14 4.75 8.06 -2.91 -0.02 4.73 16 34 H 0.42 12.46 7.37 -92.71 -0.68 11.78 16 35 H 0.11 1.32 8.14 -2.38 -0.02 1.30 16 36 H 0.08 1.48 7.38 -2.39 -0.02 1.46 16 37 H 0.06 1.41 6.34 -2.39 -0.02 1.39 16 38 H 0.13 0.98 8.14 -2.38 -0.02 0.96 16 39 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 40 H 0.11 -0.06 8.14 -2.39 -0.02 -0.08 16 41 H 0.10 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.12 -0.11 8.14 -2.39 -0.02 -0.13 16 43 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 45 H 0.03 1.12 6.62 -2.39 -0.02 1.11 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.07 4.71 6.53 -2.91 -0.02 4.69 16 Total: -1.00 -94.26 380.22 2.01 -92.25 By element: Atomic # 1 Polarization: 29.85 SS G_CDS: 0.32 Total: 30.17 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 6.28 Total: -3.02 kcal Atomic # 7 Polarization: -103.15 SS G_CDS: -6.52 Total: -109.67 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -0.10 Total: -55.07 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -94.26 2.01 -92.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364135488.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.487 kcal (2) G-P(sol) polarization free energy of solvation -94.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds