Wall clock time and date at job start Wed Apr 1 2020 01:46:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47066 * 269.99990 * 3 2 1 5 5 H 1.48501 * 109.46944 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.46805 * 150.00085 * 3 2 1 7 7 C 1.38811 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99705 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00036 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99739 * 184.91284 * 9 7 2 11 11 C 1.52998 * 109.54823 * 59.43490 * 10 9 7 12 12 N 1.46505 * 109.47163 * 54.87035 * 11 10 9 13 13 C 1.34770 * 119.99927 * 177.36822 * 12 11 10 14 14 O 1.21589 * 120.00472 * 359.97438 * 13 12 11 15 15 C 1.47580 * 120.00168 * 180.02562 * 13 12 11 16 16 C 1.40247 * 119.82698 * 359.71792 * 15 13 12 17 17 C 1.36209 * 120.37410 * 179.77091 * 16 15 13 18 18 C 1.39914 * 119.96011 * 0.49565 * 17 16 15 19 19 C 1.46256 * 133.83979 * 179.79099 * 18 17 16 20 20 C 1.34451 * 107.03121 * 179.97438 * 19 18 17 21 21 N 1.36553 * 109.98065 * 359.97438 * 20 19 18 22 22 H 0.97003 * 125.07145 * 180.02562 * 21 20 19 23 23 C 1.37821 * 109.86122 * 0.02562 * 21 20 19 24 24 C 1.38686 * 133.37331 * 180.02562 * 23 21 20 25 25 C 1.53175 * 109.54619 * 299.16303 * 10 9 7 26 26 C 1.53095 * 109.16330 * 297.11671 * 25 10 9 27 27 O 1.42901 * 109.41695 * 302.39025 * 26 25 10 28 28 C 1.42898 * 114.09791 * 61.15291 * 27 26 25 29 29 C 1.53089 * 109.41990 * 298.84786 * 28 27 26 30 30 H 0.97005 * 119.99889 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00224 * 4.91198 * 9 7 2 32 32 H 1.08992 * 109.47398 * 174.87589 * 11 10 9 33 33 H 1.09004 * 109.46667 * 294.87228 * 11 10 9 34 34 H 0.96995 * 119.99889 * 357.36698 * 12 11 10 35 35 H 1.07991 * 119.81312 * 0.02562 * 16 15 13 36 36 H 1.07994 * 120.01752 * 180.25670 * 17 16 15 37 37 H 1.08002 * 126.47972 * 359.97201 * 19 18 17 38 38 H 1.08005 * 125.00867 * 180.02562 * 20 19 18 39 39 H 1.07996 * 120.16952 * 359.93123 * 24 23 21 40 40 H 1.08999 * 109.52040 * 57.01829 * 25 10 9 41 41 H 1.08997 * 109.52869 * 177.21050 * 25 10 9 42 42 H 1.08998 * 109.48105 * 182.40308 * 26 25 10 43 43 H 1.09003 * 109.49120 * 62.37798 * 26 25 10 44 44 H 1.09003 * 109.48040 * 178.85638 * 28 27 26 45 45 H 1.09001 * 109.48887 * 58.83254 * 28 27 26 46 46 H 1.09003 * 109.52123 * 297.70339 * 29 28 27 47 47 H 1.09004 * 109.57732 * 177.54603 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4662 -0.1103 11 6 3.7324 -3.1665 -1.4166 12 7 3.9618 -2.2577 -2.5425 13 6 3.7461 -2.6799 -3.8040 14 8 3.3616 -3.8152 -4.0079 15 6 3.9777 -1.7645 -4.9383 16 6 4.4166 -0.4542 -4.6989 17 6 4.6384 0.3985 -5.7376 18 6 4.4181 -0.0288 -7.0516 19 6 4.5490 0.6110 -8.3603 20 6 4.1938 -0.3013 -9.2819 21 7 3.8471 -1.4719 -8.6702 22 1 3.5560 -2.2756 -9.1289 23 6 3.9724 -1.3414 -7.3039 24 6 3.7543 -2.2046 -6.2407 25 6 3.7595 -3.3670 1.0774 26 6 4.2140 -2.6906 2.3734 27 8 5.6179 -2.4325 2.3075 28 6 6.0010 -1.5576 1.2446 29 6 5.6183 -2.1884 -0.0968 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3652 0.0709 32 1 4.3438 -4.0603 -1.5406 33 1 2.6798 -3.4479 -1.3853 34 1 4.2689 -1.3521 -2.3799 35 1 4.5837 -0.1207 -3.6854 36 1 4.9803 1.4049 -5.5469 37 1 4.8701 1.6245 -8.5503 38 1 4.1848 -0.1332 -10.3487 39 1 3.4122 -3.2129 -6.4216 40 1 2.6814 -3.5247 1.1075 41 1 4.2659 -4.3262 0.9701 42 1 4.0042 -3.3462 3.2186 43 1 3.6771 -1.7505 2.5007 44 1 7.0787 -1.3970 1.2765 45 1 5.4877 -0.6026 1.3567 46 1 6.1624 -3.1238 -0.2278 47 1 5.8698 -1.5042 -0.9072 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484187555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:51 Heat of formation + Delta-G solvation = -4.907670 kcal Electronic energy + Delta-G solvation = -30421.166079 eV Core-core repulsion = 26376.729443 eV Total energy + Delta-G solvation = -4044.436635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.33928 -39.80955 -38.91239 -36.55797 -35.88877 -33.51913 -32.22197 -32.02460 -30.75748 -29.90304 -29.61528 -29.13171 -26.80286 -23.95907 -23.58013 -22.89416 -22.55147 -21.79515 -20.84699 -19.93803 -18.69528 -18.24884 -17.87839 -16.99790 -16.18341 -15.75850 -15.63566 -15.43349 -15.05238 -14.73609 -14.54331 -14.38005 -14.15596 -14.06243 -13.91639 -13.67268 -13.28048 -13.20803 -12.94525 -12.76114 -12.41459 -12.30773 -11.96456 -11.90907 -11.62097 -11.42965 -11.05967 -11.00835 -10.98700 -10.91241 -10.41853 -10.10167 -9.87720 -9.84347 -9.67179 -9.58004 -9.22117 -8.90462 -8.54857 -8.28341 -7.83491 -7.41260 -5.84080 -3.22930 0.81143 1.46377 2.47952 2.91649 3.25365 3.26821 3.29336 3.38530 3.67595 4.07733 4.26098 4.49565 4.58733 4.71425 4.95971 4.99021 5.05748 5.11711 5.19995 5.24812 5.33292 5.35867 5.44773 5.47534 5.57196 5.62245 5.63270 5.80673 5.87339 5.95612 5.97837 6.01724 6.14881 6.19336 6.27241 6.36065 6.45740 6.47270 6.52558 6.54551 6.61108 6.62724 6.70083 6.95984 7.02679 7.32816 7.59626 7.88211 8.00172 8.33406 8.64916 9.09045 9.80822 9.98560 11.33588 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.003426 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.468326 B = 8171.009906 C = 9109.621219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.876 3.124 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.242 4.242 8 H 0.092 0.908 9 N -0.740 5.740 10 C 0.195 3.805 11 C 0.121 3.879 12 N -0.695 5.695 13 C 0.557 3.443 14 O -0.553 6.553 15 C -0.107 4.107 16 C -0.109 4.109 17 C -0.080 4.080 18 C -0.090 4.090 19 C -0.210 4.210 20 C 0.055 3.945 21 N -0.593 5.593 22 H 0.416 0.584 23 C 0.080 3.920 24 C -0.064 4.064 25 C -0.153 4.153 26 C 0.069 3.931 27 O -0.391 6.391 28 C 0.065 3.935 29 C -0.156 4.156 30 H 0.260 0.740 31 H 0.361 0.639 32 H 0.057 0.943 33 H 0.073 0.927 34 H 0.399 0.601 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.147 0.853 38 H 0.171 0.829 39 H 0.133 0.867 40 H 0.083 0.917 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.052 0.948 46 H 0.075 0.925 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.841 -0.902 -12.701 18.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.184 4.184 3 Si 0.707 3.293 4 H -0.209 1.209 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.372 4.372 8 H 0.110 0.890 9 N -0.384 5.384 10 C 0.104 3.896 11 C -0.005 4.005 12 N -0.345 5.345 13 C 0.343 3.657 14 O -0.433 6.433 15 C -0.112 4.112 16 C -0.129 4.129 17 C -0.099 4.099 18 C -0.095 4.095 19 C -0.236 4.236 20 C -0.072 4.072 21 N -0.196 5.196 22 H 0.253 0.747 23 C -0.026 4.026 24 C -0.085 4.085 25 C -0.194 4.194 26 C -0.007 4.007 27 O -0.310 6.310 28 C -0.012 4.012 29 C -0.194 4.194 30 H 0.070 0.930 31 H 0.195 0.805 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.236 0.764 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.165 0.835 38 H 0.188 0.812 39 H 0.151 0.849 40 H 0.101 0.899 41 H 0.078 0.922 42 H 0.100 0.900 43 H 0.083 0.917 44 H 0.102 0.898 45 H 0.070 0.930 46 H 0.094 0.906 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.396 -1.929 -12.762 17.895 hybrid contribution 0.107 1.574 -0.417 1.632 sum 12.503 -0.355 -13.178 18.169 Atomic orbital electron populations 1.69687 1.05102 1.25798 1.56832 1.24640 0.95074 0.96908 1.01748 0.86704 0.79189 0.85600 0.77845 1.20913 1.21788 1.20502 1.18902 0.80166 0.94629 1.43490 0.88984 1.42899 1.04252 1.01892 1.89334 1.19797 0.89771 0.87888 0.92159 1.21778 1.01847 0.91371 0.85494 1.45612 1.66883 1.16867 1.05092 1.18043 0.77790 0.86812 0.83006 1.90728 1.47325 1.19927 1.85355 1.19612 1.04040 0.94637 0.92871 1.20795 1.00115 0.92688 0.99318 1.20165 0.99970 0.99616 0.90129 1.19370 1.03094 0.93208 0.93811 1.21721 1.11453 1.00156 0.90238 1.21845 1.01524 0.85399 0.98421 1.41747 1.59417 1.13815 1.04608 0.74691 1.18088 1.04555 0.96085 0.83847 1.20046 1.00150 0.99075 0.89255 1.22456 1.02861 0.98134 0.95901 1.22477 0.80825 1.00533 0.96903 1.87820 1.24706 1.67526 1.50962 1.22456 0.99430 0.92871 0.86402 1.22421 0.96639 1.02073 0.98262 0.93008 0.80464 0.92435 0.90877 0.76436 0.85556 0.85515 0.83538 0.81221 0.84877 0.89886 0.92237 0.89971 0.91655 0.89773 0.93018 0.90608 0.91257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.83 13.97 55.49 0.78 -27.06 16 2 C 0.01 0.35 5.50 -17.43 -0.10 0.25 16 3 Si 0.88 20.54 27.78 -169.99 -4.72 15.82 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.02 6.45 56.52 0.36 -5.66 16 7 C -0.24 -6.09 9.18 -15.06 -0.14 -6.23 16 8 H 0.09 2.56 6.99 -52.49 -0.37 2.19 16 9 N -0.74 -14.98 3.46 -47.06 -0.16 -15.15 16 10 C 0.20 3.32 0.41 -131.64 -0.05 3.27 16 11 C 0.12 2.16 4.33 -4.04 -0.02 2.14 16 12 N -0.69 -12.11 5.08 -61.33 -0.31 -12.42 16 13 C 0.56 10.25 7.76 -12.45 -0.10 10.15 16 14 O -0.55 -11.70 16.31 5.29 0.09 -11.61 16 15 C -0.11 -1.72 5.87 -104.94 -0.62 -2.34 16 16 C -0.11 -1.58 9.46 -39.56 -0.37 -1.95 16 17 C -0.08 -1.05 10.03 -39.68 -0.40 -1.45 16 18 C -0.09 -1.17 6.37 -105.04 -0.67 -1.84 16 19 C -0.21 -2.14 11.08 -37.70 -0.42 -2.56 16 20 C 0.06 0.45 11.81 -16.79 -0.20 0.26 16 21 N -0.59 -5.58 6.06 -10.69 -0.06 -5.65 16 22 H 0.42 2.68 8.96 -40.82 -0.37 2.32 16 23 C 0.08 1.05 7.26 -84.00 -0.61 0.44 16 24 C -0.06 -0.94 9.61 -39.03 -0.37 -1.31 16 25 C -0.15 -2.55 4.83 -26.59 -0.13 -2.68 16 26 C 0.07 1.13 6.68 37.21 0.25 1.38 16 27 O -0.39 -6.35 10.77 -35.23 -0.38 -6.73 16 28 C 0.07 0.95 6.67 37.20 0.25 1.19 16 29 C -0.16 -2.21 4.80 -26.59 -0.13 -2.34 16 30 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 31 H 0.36 7.26 4.55 -40.82 -0.19 7.08 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.07 1.53 7.53 -51.93 -0.39 1.14 16 34 H 0.40 6.51 5.39 -40.82 -0.22 6.29 16 35 H 0.13 1.69 6.36 -52.49 -0.33 1.35 16 36 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 37 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 38 H 0.17 0.71 8.06 -52.48 -0.42 0.29 16 39 H 0.13 1.90 7.62 -52.49 -0.40 1.50 16 40 H 0.08 1.53 7.14 -51.93 -0.37 1.16 16 41 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.07 1.21 7.75 -51.93 -0.40 0.81 16 44 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.05 0.81 7.08 -51.93 -0.37 0.44 16 46 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.07 0.90 7.35 -51.93 -0.38 0.52 16 LS Contribution 375.68 15.07 5.66 5.66 Total: -1.00 -33.14 375.68 -9.28 -42.42 By element: Atomic # 1 Polarization: 24.68 SS G_CDS: -6.34 Total: 18.34 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -3.82 Total: -3.62 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: 0.24 Total: -60.27 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.29 Total: -18.34 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.72 Total: 15.82 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.14 -9.28 -42.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484187555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.509 kcal (2) G-P(sol) polarization free energy of solvation -33.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds