Wall clock time and date at job start Wed Apr 1 2020 01:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86806 * 119.99966 * 2 1 4 4 H 1.48500 * 109.47066 * 269.99990 * 3 2 1 5 5 H 1.48501 * 109.46944 * 30.00131 * 3 2 1 6 6 H 1.48501 * 109.46805 * 150.00085 * 3 2 1 7 7 C 1.38811 * 119.99983 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99705 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00036 * 179.97438 * 7 2 1 10 10 C 1.46498 * 119.99739 * 184.91284 * 9 7 2 11 11 C 1.52998 * 109.54823 * 59.43490 * 10 9 7 12 12 N 1.46505 * 109.47163 * 54.87035 * 11 10 9 13 13 C 1.34770 * 119.99927 * 177.36822 * 12 11 10 14 14 O 1.21589 * 120.00472 * 359.97438 * 13 12 11 15 15 C 1.47580 * 120.00168 * 180.02562 * 13 12 11 16 16 C 1.40247 * 119.82698 * 359.71792 * 15 13 12 17 17 C 1.36209 * 120.37410 * 179.77091 * 16 15 13 18 18 C 1.39914 * 119.96011 * 0.49565 * 17 16 15 19 19 C 1.46256 * 133.83979 * 179.79099 * 18 17 16 20 20 C 1.34451 * 107.03121 * 179.97438 * 19 18 17 21 21 N 1.36553 * 109.98065 * 359.97438 * 20 19 18 22 22 H 0.97003 * 125.07145 * 180.02562 * 21 20 19 23 23 C 1.37821 * 109.86122 * 0.02562 * 21 20 19 24 24 C 1.38686 * 133.37331 * 180.02562 * 23 21 20 25 25 C 1.53175 * 109.54619 * 299.16303 * 10 9 7 26 26 C 1.53095 * 109.16330 * 297.11671 * 25 10 9 27 27 O 1.42901 * 109.41695 * 302.39025 * 26 25 10 28 28 C 1.42898 * 114.09791 * 61.15291 * 27 26 25 29 29 C 1.53089 * 109.41990 * 298.84786 * 28 27 26 30 30 H 0.97005 * 119.99889 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00224 * 4.91198 * 9 7 2 32 32 H 1.08992 * 109.47398 * 174.87589 * 11 10 9 33 33 H 1.09004 * 109.46667 * 294.87228 * 11 10 9 34 34 H 0.96995 * 119.99889 * 357.36698 * 12 11 10 35 35 H 1.07991 * 119.81312 * 0.02562 * 16 15 13 36 36 H 1.07994 * 120.01752 * 180.25670 * 17 16 15 37 37 H 1.08002 * 126.47972 * 359.97201 * 19 18 17 38 38 H 1.08005 * 125.00867 * 180.02562 * 20 19 18 39 39 H 1.07996 * 120.16952 * 359.93123 * 24 23 21 40 40 H 1.08999 * 109.52040 * 57.01829 * 25 10 9 41 41 H 1.08997 * 109.52869 * 177.21050 * 25 10 9 42 42 H 1.08998 * 109.48105 * 182.40308 * 26 25 10 43 43 H 1.09003 * 109.49120 * 62.37798 * 26 25 10 44 44 H 1.09003 * 109.48040 * 178.85638 * 28 27 26 45 45 H 1.09001 * 109.48887 * 58.83254 * 28 27 26 46 46 H 1.09003 * 109.52123 * 297.70339 * 29 28 27 47 47 H 1.09004 * 109.57732 * 177.54603 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0014 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4662 -0.1103 11 6 3.7324 -3.1665 -1.4166 12 7 3.9618 -2.2577 -2.5425 13 6 3.7461 -2.6799 -3.8040 14 8 3.3616 -3.8152 -4.0079 15 6 3.9777 -1.7645 -4.9383 16 6 4.4166 -0.4542 -4.6989 17 6 4.6384 0.3985 -5.7376 18 6 4.4181 -0.0288 -7.0516 19 6 4.5490 0.6110 -8.3603 20 6 4.1938 -0.3013 -9.2819 21 7 3.8471 -1.4719 -8.6702 22 1 3.5560 -2.2756 -9.1289 23 6 3.9724 -1.3414 -7.3039 24 6 3.7543 -2.2046 -6.2407 25 6 3.7595 -3.3670 1.0774 26 6 4.2140 -2.6906 2.3734 27 8 5.6179 -2.4325 2.3075 28 6 6.0010 -1.5576 1.2446 29 6 5.6183 -2.1884 -0.0968 30 1 -0.4850 0.8401 -0.0004 31 1 3.8646 -0.3652 0.0709 32 1 4.3438 -4.0603 -1.5406 33 1 2.6798 -3.4479 -1.3853 34 1 4.2689 -1.3521 -2.3799 35 1 4.5837 -0.1207 -3.6854 36 1 4.9803 1.4049 -5.5469 37 1 4.8701 1.6245 -8.5503 38 1 4.1848 -0.1332 -10.3487 39 1 3.4122 -3.2129 -6.4216 40 1 2.6814 -3.5247 1.1075 41 1 4.2659 -4.3262 0.9701 42 1 4.0042 -3.3462 3.2186 43 1 3.6771 -1.7505 2.5007 44 1 7.0787 -1.3970 1.2765 45 1 5.4877 -0.6026 1.3567 46 1 6.1624 -3.1238 -0.2278 47 1 5.8698 -1.5042 -0.9072 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484187555.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:50 Heat of formation + Delta-G solvation = -28.156267 kcal Electronic energy + Delta-G solvation = -30422.174213 eV Core-core repulsion = 26376.729443 eV Total energy + Delta-G solvation = -4045.444770 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.24017 -41.19128 -40.25347 -37.65223 -37.32075 -35.19022 -33.96162 -32.97004 -32.01957 -31.68225 -30.66808 -30.06949 -28.12255 -25.71910 -24.80911 -24.24542 -23.58018 -23.10709 -21.62616 -21.25928 -20.12535 -19.80823 -19.32983 -18.07696 -17.30062 -17.12326 -16.92761 -16.74501 -16.42614 -16.35157 -15.93861 -15.61478 -15.37398 -15.25093 -14.96786 -14.87947 -14.70940 -14.32279 -14.20307 -14.14587 -13.90699 -13.76077 -13.25069 -13.02028 -12.89409 -12.80332 -12.69993 -12.55971 -12.19401 -12.11183 -12.03977 -11.73148 -11.51899 -11.19414 -11.10748 -10.93409 -10.79058 -10.38804 -10.02013 -9.31736 -9.29304 -8.71561 -7.95493 -5.31076 -0.25195 0.43999 1.37790 1.42876 1.49638 1.61844 2.01241 2.09379 2.41773 2.52062 2.93422 3.04436 3.35296 3.45367 3.67917 3.77334 3.80442 3.89015 3.96965 4.08948 4.14613 4.19325 4.28714 4.34862 4.42319 4.55843 4.64697 4.67614 4.70031 4.76337 4.80276 4.86148 4.98322 4.99185 5.00867 5.05739 5.17489 5.25685 5.27173 5.29606 5.45504 5.50552 5.65786 5.75116 5.84817 6.07827 6.26118 6.33988 6.58850 6.65475 7.12314 7.22449 7.83188 8.04266 9.25924 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012027 B = 0.003426 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.468326 B = 8171.009906 C = 9109.621219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.059 4.059 3 Si 0.942 3.058 4 H -0.275 1.275 5 H -0.308 1.308 6 H -0.245 1.245 7 C -0.207 4.207 8 H 0.053 0.947 9 N -0.734 5.734 10 C 0.193 3.807 11 C 0.128 3.872 12 N -0.690 5.690 13 C 0.552 3.448 14 O -0.592 6.592 15 C -0.137 4.137 16 C -0.119 4.119 17 C -0.084 4.084 18 C -0.102 4.102 19 C -0.232 4.232 20 C 0.080 3.920 21 N -0.585 5.585 22 H 0.430 0.570 23 C 0.062 3.938 24 C -0.069 4.069 25 C -0.152 4.152 26 C 0.075 3.925 27 O -0.394 6.394 28 C 0.061 3.939 29 C -0.148 4.148 30 H 0.253 0.747 31 H 0.368 0.632 32 H 0.071 0.929 33 H 0.031 0.969 34 H 0.406 0.594 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.169 0.831 38 H 0.219 0.781 39 H 0.126 0.874 40 H 0.054 0.946 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.039 0.961 44 H 0.118 0.882 45 H 0.041 0.959 46 H 0.093 0.907 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.260 0.621 -14.674 21.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.636 5.636 2 C -0.250 4.250 3 Si 0.770 3.230 4 H -0.201 1.201 5 H -0.235 1.235 6 H -0.170 1.170 7 C -0.338 4.338 8 H 0.071 0.929 9 N -0.378 5.378 10 C 0.103 3.897 11 C 0.001 3.999 12 N -0.340 5.340 13 C 0.341 3.659 14 O -0.475 6.475 15 C -0.141 4.141 16 C -0.139 4.139 17 C -0.102 4.102 18 C -0.107 4.107 19 C -0.257 4.257 20 C -0.047 4.047 21 N -0.189 5.189 22 H 0.269 0.731 23 C -0.045 4.045 24 C -0.090 4.090 25 C -0.192 4.192 26 C -0.001 4.001 27 O -0.313 6.313 28 C -0.015 4.015 29 C -0.186 4.186 30 H 0.062 0.938 31 H 0.203 0.797 32 H 0.090 0.910 33 H 0.050 0.950 34 H 0.244 0.756 35 H 0.150 0.850 36 H 0.168 0.832 37 H 0.187 0.813 38 H 0.235 0.765 39 H 0.144 0.856 40 H 0.073 0.927 41 H 0.099 0.901 42 H 0.118 0.882 43 H 0.058 0.942 44 H 0.136 0.864 45 H 0.059 0.941 46 H 0.112 0.888 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.891 -0.430 -14.739 21.678 hybrid contribution -0.951 0.985 0.034 1.370 sum 14.940 0.555 -14.705 20.970 Atomic orbital electron populations 1.69894 1.07358 1.26211 1.60164 1.25388 0.95771 1.00843 1.03046 0.85612 0.78893 0.80267 0.78213 1.20126 1.23523 1.16979 1.18711 0.82209 0.92832 1.40008 0.92861 1.42777 1.02440 1.03595 1.89023 1.19996 0.91853 0.86353 0.91528 1.21655 0.99589 0.92341 0.86269 1.45569 1.66603 1.17041 1.04788 1.18522 0.76846 0.86734 0.83787 1.90689 1.49207 1.21639 1.85930 1.19484 1.07009 0.95220 0.92373 1.20869 1.00641 0.92187 1.00183 1.20449 0.99368 1.00367 0.89998 1.19850 1.02312 0.93528 0.95050 1.22086 1.12824 1.01753 0.88998 1.22656 0.97959 0.83789 1.00314 1.41894 1.58552 1.15071 1.03358 0.73053 1.18111 1.05232 0.96062 0.85128 1.20054 1.00127 0.99166 0.89691 1.22418 1.01365 0.99245 0.96125 1.22372 0.81086 0.99520 0.97152 1.87829 1.23860 1.67853 1.51759 1.22662 1.01332 0.91914 0.85640 1.22401 0.93572 1.03544 0.99104 0.93806 0.79747 0.91040 0.95034 0.75631 0.84968 0.83173 0.81338 0.76465 0.85601 0.92697 0.90060 0.88188 0.94242 0.86377 0.94087 0.88838 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.05 13.97 21.65 0.30 -61.75 16 2 C -0.06 -3.33 5.50 84.86 0.47 -2.86 16 3 Si 0.94 42.70 27.78 68.60 1.91 44.60 16 4 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.31 -14.76 7.11 99.48 0.71 -14.05 16 6 H -0.25 -9.63 6.45 99.48 0.64 -8.99 16 7 C -0.21 -10.78 9.18 84.03 0.77 -10.01 16 8 H 0.05 3.18 6.99 -2.91 -0.02 3.16 16 9 N -0.73 -29.62 3.46 -302.81 -1.05 -30.67 16 10 C 0.19 6.46 0.41 3.72 0.00 6.46 16 11 C 0.13 4.67 4.33 86.38 0.37 5.04 16 12 N -0.69 -24.46 5.08 -466.23 -2.37 -26.83 16 13 C 0.55 21.13 7.76 86.71 0.67 21.81 16 14 O -0.59 -26.34 16.31 -3.99 -0.07 -26.40 16 15 C -0.14 -4.50 5.87 -20.07 -0.12 -4.61 16 16 C -0.12 -3.38 9.46 22.29 0.21 -3.16 16 17 C -0.08 -2.06 10.03 22.20 0.22 -1.84 16 18 C -0.10 -2.46 6.37 -20.14 -0.13 -2.59 16 19 C -0.23 -3.91 11.08 23.49 0.26 -3.65 16 20 C 0.08 0.98 11.81 83.09 0.98 1.96 16 21 N -0.59 -9.46 6.06 -187.72 -1.14 -10.60 16 22 H 0.43 4.46 8.96 -92.71 -0.83 3.62 16 23 C 0.06 1.54 7.26 38.96 0.28 1.83 16 24 C -0.07 -2.07 9.61 22.63 0.22 -1.85 16 25 C -0.15 -5.03 4.83 30.68 0.15 -4.88 16 26 C 0.08 2.40 6.68 72.01 0.48 2.88 16 27 O -0.39 -11.75 10.77 -148.98 -1.60 -13.35 16 28 C 0.06 1.56 6.67 72.01 0.48 2.04 16 29 C -0.15 -3.79 4.80 30.69 0.15 -3.64 16 30 H 0.25 15.42 8.31 -92.70 -0.77 14.65 16 31 H 0.37 14.12 4.55 -92.71 -0.42 13.70 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.40 16 33 H 0.03 1.41 7.53 -2.38 -0.02 1.39 16 34 H 0.41 13.07 5.39 -92.71 -0.50 12.57 16 35 H 0.13 3.42 6.36 -2.91 -0.02 3.40 16 36 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 37 H 0.17 2.01 8.06 -2.91 -0.02 1.98 16 38 H 0.22 0.50 8.06 -2.91 -0.02 0.47 16 39 H 0.13 3.80 7.62 -2.91 -0.02 3.78 16 40 H 0.05 2.12 7.14 -2.39 -0.02 2.11 16 41 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.10 2.79 8.14 -2.39 -0.02 2.78 16 43 H 0.04 1.46 7.75 -2.39 -0.02 1.44 16 44 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.04 1.15 7.08 -2.39 -0.02 1.13 16 46 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.09 1.96 7.35 -2.39 -0.02 1.94 16 Total: -1.00 -77.11 375.68 0.67 -76.44 By element: Atomic # 1 Polarization: 46.43 SS G_CDS: -0.78 Total: 45.64 kcal Atomic # 6 Polarization: -2.56 SS G_CDS: 5.47 Total: 2.92 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -4.25 Total: -129.85 kcal Atomic # 8 Polarization: -38.08 SS G_CDS: -1.67 Total: -39.75 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.91 Total: 44.60 kcal Total: -77.11 0.67 -76.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484187555.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.283 kcal (2) G-P(sol) polarization free energy of solvation -77.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds