Wall clock time and date at job start Wed Apr 1 2020 01:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86801 * 119.99967 * 2 1 4 4 H 1.48500 * 109.47291 * 270.00202 * 3 2 1 5 5 H 1.48500 * 109.47165 * 30.00068 * 3 2 1 6 6 H 1.48497 * 109.47167 * 149.99972 * 3 2 1 7 7 C 1.38810 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99668 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00145 * 359.97438 * 7 2 1 10 10 C 1.46498 * 120.00021 * 179.97438 * 9 7 2 11 11 C 1.52993 * 109.47243 * 180.02562 * 10 9 7 12 12 N 1.46504 * 109.47603 * 180.02562 * 11 10 9 13 13 C 1.46496 * 119.99687 * 270.00667 * 12 11 10 14 14 C 1.53001 * 109.47194 * 274.63046 * 13 12 11 15 15 O 1.42903 * 109.46868 * 65.00035 * 14 13 12 16 16 C 1.34770 * 119.99894 * 89.99830 * 12 11 10 17 17 O 1.21644 * 120.00151 * 5.65311 * 16 12 11 18 18 C 1.47137 * 120.00069 * 185.64636 * 16 12 11 19 19 C 1.36621 * 126.97204 * 54.32237 * 18 16 12 20 20 N 1.34703 * 108.68287 * 179.97438 * 19 18 16 21 21 H 0.96998 * 124.72215 * 179.97438 * 20 19 18 22 22 C 1.36218 * 110.54679 * 0.26307 * 20 19 18 23 23 C 1.35749 * 108.67828 * 359.55712 * 22 20 19 24 24 C 1.48281 * 126.98002 * 180.15586 * 23 22 20 25 25 C 1.39395 * 120.12497 * 130.03820 * 24 23 22 26 26 C 1.38000 * 119.87196 * 179.77071 * 25 24 23 27 27 C 1.38329 * 120.12702 * 0.50984 * 26 25 24 28 28 C 1.38339 * 120.25421 * 359.74176 * 27 26 25 29 29 C 1.37999 * 120.12389 * 0.02562 * 28 27 26 30 30 H 0.97006 * 120.00200 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99769 * 0.02562 * 9 7 2 32 32 H 1.09004 * 109.46794 * 60.00684 * 10 9 7 33 33 H 1.08999 * 109.47325 * 300.00963 * 10 9 7 34 34 H 1.09004 * 109.46818 * 60.00514 * 11 10 9 35 35 H 1.08999 * 109.47596 * 300.00613 * 11 10 9 36 36 H 1.08994 * 109.47974 * 34.63432 * 13 12 11 37 37 H 1.09005 * 109.46835 * 154.63992 * 13 12 11 38 38 H 1.08995 * 109.47311 * 185.00172 * 14 13 12 39 39 H 1.08997 * 109.47236 * 305.00603 * 14 13 12 40 40 H 0.96697 * 114.00272 * 179.97438 * 15 14 13 41 41 H 1.08003 * 125.65460 * 359.97438 * 19 18 16 42 42 H 1.08003 * 125.65669 * 179.72066 * 22 20 19 43 43 H 1.07998 * 120.06185 * 0.02562 * 25 24 23 44 44 H 1.08004 * 119.93885 * 180.25414 * 26 25 24 45 45 H 1.08002 * 119.87705 * 179.76493 * 27 26 25 46 46 H 1.07996 * 119.93560 * 180.02562 * 28 27 26 47 47 H 1.07999 * 120.06034 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5476 1.4402 0.7000 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3255 -2.3881 0.0016 10 6 2.0580 -3.6567 0.0016 11 6 1.0639 -4.8197 0.0022 12 7 1.7964 -6.0885 0.0029 13 6 2.1626 -6.7233 -1.2656 14 6 0.9945 -7.5759 -1.7652 15 8 -0.1154 -6.7299 -2.0725 16 6 2.1334 -6.6714 1.1703 17 8 1.7417 -6.1998 2.2210 18 6 2.9749 -7.8784 1.1740 19 6 4.1976 -8.0293 0.5836 20 7 4.6379 -9.2808 0.8167 21 1 5.4834 -9.6368 0.5017 22 6 3.7274 -9.9788 1.5512 23 6 2.6702 -9.1695 1.8161 24 6 1.4531 -9.5162 2.5889 25 6 1.0139 -8.6805 3.6144 26 6 -0.1222 -9.0057 4.3271 27 6 -0.8188 -10.1639 4.0326 28 6 -0.3846 -10.9998 3.0193 29 6 0.7474 -10.6822 2.2968 30 1 -0.4851 0.8401 -0.0004 31 1 0.3555 -2.3880 0.0016 32 1 2.6853 -3.7141 0.8912 33 1 2.6842 -3.7148 -0.8887 34 1 0.4370 -4.7621 -0.8876 35 1 0.4375 -4.7618 0.8924 36 1 2.3932 -5.9549 -2.0034 37 1 3.0368 -7.3570 -1.1156 38 1 1.2973 -8.1178 -2.6611 39 1 0.7061 -8.2866 -0.9907 40 1 -0.8935 -7.2039 -2.3962 41 1 4.7239 -7.2709 0.0229 42 1 3.8308 -11.0049 1.8719 43 1 1.5593 -7.7781 3.8480 44 1 -0.4658 -8.3568 5.1192 45 1 -1.7052 -10.4165 4.5954 46 1 -0.9327 -11.9025 2.7934 47 1 1.0851 -11.3353 1.5057 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569955883.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:58 Heat of formation + Delta-G solvation = 9.488448 kcal Electronic energy + Delta-G solvation = -29867.764169 eV Core-core repulsion = 25823.951796 eV Total energy + Delta-G solvation = -4043.812373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.46310 -39.21792 -38.80873 -37.01276 -35.37704 -34.17064 -32.66108 -31.57299 -30.88978 -30.22818 -29.32181 -28.51123 -27.18409 -24.02997 -23.21159 -23.02459 -22.53073 -21.99683 -20.90972 -19.95370 -19.02239 -18.08254 -17.49412 -17.04538 -16.57513 -16.23646 -16.01584 -15.13841 -14.96380 -14.73638 -14.52198 -14.44832 -14.18730 -13.87995 -13.58859 -13.52585 -13.37167 -13.22383 -13.08991 -13.03027 -12.78702 -12.51208 -12.30545 -12.04121 -11.51794 -11.20548 -11.09242 -10.97410 -10.83977 -10.79563 -10.49254 -10.08954 -10.01728 -9.69020 -9.54688 -9.42092 -8.89471 -8.76768 -8.64484 -8.25045 -8.15384 -6.81168 -5.65770 -2.94228 1.15557 1.45843 1.82659 2.35838 2.93643 3.10185 3.43686 3.50452 3.55271 3.57627 3.84977 4.23696 4.58768 4.69825 4.72720 4.83385 4.92704 4.97352 5.02788 5.07587 5.18253 5.19858 5.29238 5.45183 5.48605 5.53994 5.61514 5.66043 5.72883 5.76514 5.97723 6.00699 6.10351 6.12401 6.22087 6.32136 6.41024 6.48791 6.56728 6.68134 6.71905 6.77595 6.92709 7.03569 7.11586 7.17905 7.59638 7.77907 7.79180 8.51790 8.55273 9.63493 10.22056 10.57322 11.57288 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012410 B = 0.002772 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.659236 B =10098.989404 C =10574.055231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.907 3.093 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.235 4.235 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.144 3.856 11 C 0.112 3.888 12 N -0.595 5.595 13 C 0.106 3.894 14 C 0.061 3.939 15 O -0.562 6.562 16 C 0.585 3.415 17 O -0.527 6.527 18 C -0.195 4.195 19 C 0.031 3.969 20 N -0.548 5.548 21 H 0.418 0.582 22 C -0.001 4.001 23 C -0.089 4.089 24 C -0.018 4.018 25 C -0.087 4.087 26 C -0.121 4.121 27 C -0.123 4.123 28 C -0.129 4.129 29 C -0.113 4.113 30 H 0.254 0.746 31 H 0.384 0.616 32 H 0.019 0.981 33 H 0.015 0.985 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.375 0.625 41 H 0.175 0.825 42 H 0.171 0.829 43 H 0.137 0.863 44 H 0.122 0.878 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.902 -29.970 -0.729 30.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.366 4.366 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.015 3.985 11 C -0.010 4.010 12 N -0.327 5.327 13 C -0.018 4.018 14 C -0.018 4.018 15 O -0.367 6.367 16 C 0.372 3.628 17 O -0.403 6.403 18 C -0.206 4.206 19 C -0.103 4.103 20 N -0.142 5.142 21 H 0.255 0.745 22 C -0.131 4.131 23 C -0.096 4.096 24 C -0.018 4.018 25 C -0.105 4.105 26 C -0.139 4.139 27 C -0.142 4.142 28 C -0.147 4.147 29 C -0.132 4.132 30 H 0.064 0.936 31 H 0.218 0.782 32 H 0.037 0.963 33 H 0.033 0.967 34 H 0.107 0.893 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.112 0.888 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.221 0.779 41 H 0.192 0.808 42 H 0.188 0.812 43 H 0.155 0.845 44 H 0.140 0.860 45 H 0.136 0.864 46 H 0.136 0.864 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.367 -29.171 0.001 29.858 hybrid contribution 0.201 0.313 -0.472 0.601 sum 6.568 -28.858 -0.470 29.599 Atomic orbital electron populations 1.69667 1.05064 1.25525 1.57931 1.24737 0.95540 0.97610 1.03235 0.86177 0.78641 0.83911 0.77403 1.21804 1.21776 1.20824 1.19207 0.90947 0.84072 1.42377 0.91307 1.42208 1.05924 0.99773 1.89477 1.20910 0.93999 0.85936 0.97627 1.21703 0.94582 0.80868 1.03874 1.47659 1.56929 1.23259 1.04860 1.21760 0.96037 0.97626 0.86375 1.22638 0.88101 0.92812 0.98221 1.86595 1.24824 1.36989 1.88257 1.17445 0.79573 0.82166 0.83600 1.90774 1.54205 1.64213 1.31077 1.20439 0.97296 0.95177 1.07656 1.21773 0.96508 0.87898 1.04088 1.41372 1.18712 1.10893 1.43227 0.74486 1.21745 0.90934 0.98290 1.02087 1.19023 0.95210 0.92324 1.03054 1.18113 0.93666 0.94774 0.95271 1.21588 0.96078 0.98925 0.93899 1.21157 0.95570 0.96935 1.00215 1.21180 0.99829 0.95106 0.98041 1.20979 0.97046 0.99861 0.96772 1.21122 0.95664 0.96558 0.99811 0.93566 0.78207 0.96313 0.96727 0.89321 0.90096 0.89567 0.88755 0.93304 0.93575 0.77853 0.80755 0.81191 0.84495 0.86047 0.86437 0.86380 0.86429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.49 13.06 55.49 0.72 -28.77 16 2 C -0.02 -0.47 5.50 -17.43 -0.10 -0.56 16 3 Si 0.91 23.32 29.55 -169.99 -5.02 18.30 16 4 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 5 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16 6 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 7 C -0.23 -6.98 9.99 -15.06 -0.15 -7.13 16 8 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 9 N -0.73 -20.09 5.60 -59.91 -0.34 -20.43 16 10 C 0.14 3.26 6.58 -4.05 -0.03 3.23 16 11 C 0.11 2.18 5.38 -4.04 -0.02 2.16 16 12 N -0.59 -9.42 2.46 -175.07 -0.43 -9.85 16 13 C 0.11 1.25 5.79 -4.04 -0.02 1.22 16 14 C 0.06 0.65 7.39 37.16 0.27 0.92 16 15 O -0.56 -6.98 12.07 -35.23 -0.43 -7.41 16 16 C 0.58 9.82 7.39 -12.65 -0.09 9.73 16 17 O -0.53 -10.94 14.34 5.24 0.08 -10.86 16 18 C -0.20 -2.51 5.21 -103.15 -0.54 -3.05 16 19 C 0.03 0.28 9.75 -16.88 -0.16 0.11 16 20 N -0.55 -3.41 5.88 -12.63 -0.07 -3.48 16 21 H 0.42 1.04 8.96 -40.82 -0.37 0.68 16 22 C 0.00 -0.01 11.79 -16.49 -0.19 -0.20 16 23 C -0.09 -1.04 5.79 -102.94 -0.60 -1.64 16 24 C -0.02 -0.22 5.73 -104.91 -0.60 -0.82 16 25 C -0.09 -1.24 8.97 -39.24 -0.35 -1.59 16 26 C -0.12 -1.51 10.03 -39.63 -0.40 -1.91 16 27 C -0.12 -1.32 10.04 -39.51 -0.40 -1.72 16 28 C -0.13 -1.28 10.03 -39.63 -0.40 -1.67 16 29 C -0.11 -1.18 9.72 -39.24 -0.38 -1.56 16 30 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 31 H 0.38 11.07 7.67 -40.82 -0.31 10.76 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.01 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 1.73 6.70 -51.93 -0.35 1.38 16 35 H 0.08 1.76 7.35 -51.93 -0.38 1.38 16 36 H 0.09 1.05 8.11 -51.93 -0.42 0.63 16 37 H 0.09 0.85 4.69 -51.93 -0.24 0.61 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.37 3.00 9.12 45.56 0.42 3.42 16 41 H 0.18 1.22 7.75 -52.48 -0.41 0.81 16 42 H 0.17 0.86 8.06 -52.48 -0.42 0.43 16 43 H 0.14 2.24 6.47 -52.49 -0.34 1.90 16 44 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 45 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 LS Contribution 395.20 15.07 5.96 5.96 Total: -1.00 -38.87 395.20 -9.45 -48.31 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -5.76 Total: 12.71 kcal Atomic # 6 Polarization: -0.32 SS G_CDS: -4.16 Total: -4.48 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.12 Total: -62.53 kcal Atomic # 8 Polarization: -17.92 SS G_CDS: -0.35 Total: -18.27 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -5.02 Total: 18.30 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.87 -9.45 -48.31 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569955883.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.800 kcal (2) G-P(sol) polarization free energy of solvation -38.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds