Wall clock time and date at job start Wed Apr 1 2020 02:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 120.00100 * 2 1 4 4 H 1.48503 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47157 * 299.99761 * 3 2 1 6 6 H 1.48497 * 109.47302 * 59.99948 * 3 2 1 7 7 C 1.38819 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99445 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99804 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46888 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46888 * 179.97438 * 11 10 9 13 13 C 1.46499 * 120.00006 * 89.99527 * 12 11 10 14 14 C 1.50707 * 109.46838 * 84.43909 * 13 12 11 15 15 C 1.38234 * 120.00218 * 94.99710 * 14 13 12 16 16 C 1.38233 * 119.99688 * 179.97438 * 15 14 13 17 17 C 1.38236 * 120.00162 * 359.97438 * 16 15 14 18 18 C 1.38225 * 120.00163 * 0.27898 * 17 16 15 19 19 C 1.38233 * 119.99415 * 274.97411 * 14 13 12 20 20 C 1.34776 * 119.99736 * 269.99654 * 12 11 10 21 21 O 1.21278 * 120.00336 * 5.04590 * 20 12 11 22 22 C 1.50704 * 119.99957 * 185.04155 * 20 12 11 23 23 C 1.52991 * 109.47282 * 179.97438 * 22 20 12 24 24 C 1.50703 * 109.47411 * 180.02562 * 23 22 20 25 25 C 1.41378 * 126.80520 * 124.70964 * 24 23 22 26 26 C 1.35445 * 103.98437 * 179.88903 * 25 24 23 27 27 O 1.34046 * 106.45071 * 0.37010 * 26 25 24 28 28 N 1.20920 * 111.56048 * 359.74664 * 27 26 25 29 29 H 0.96992 * 119.99512 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99962 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.47394 * 59.99831 * 10 9 7 32 32 H 1.09004 * 109.46889 * 299.99586 * 10 9 7 33 33 H 1.08994 * 109.47316 * 59.99691 * 11 10 9 34 34 H 1.09004 * 109.46943 * 299.99461 * 11 10 9 35 35 H 1.08998 * 109.47559 * 324.43924 * 13 12 11 36 36 H 1.08998 * 109.47224 * 204.43361 * 13 12 11 37 37 H 1.07999 * 120.00279 * 359.97438 * 15 14 13 38 38 H 1.08007 * 119.99707 * 180.02562 * 16 15 14 39 39 H 1.08000 * 119.99958 * 179.97438 * 17 16 15 40 40 H 1.07998 * 120.00053 * 179.72465 * 18 17 16 41 41 H 1.08000 * 120.00480 * 0.02562 * 19 14 13 42 42 H 1.08998 * 109.47412 * 299.97255 * 22 20 12 43 43 H 1.09010 * 109.46883 * 59.96486 * 22 20 12 44 44 H 1.09004 * 109.47287 * 300.00062 * 23 22 20 45 45 H 1.08996 * 109.47290 * 60.00116 * 23 22 20 46 46 H 1.07994 * 128.00485 * 0.02729 * 25 24 23 47 47 H 1.08003 * 126.77751 * 180.09907 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0017 11 6 1.0637 -4.8197 0.0008 12 7 1.7962 -6.0885 0.0013 13 6 2.1615 -6.7229 1.2703 14 6 1.0023 -7.5442 1.7732 15 6 0.9409 -8.8967 1.4942 16 6 -0.1221 -9.6501 1.9560 17 6 -1.1235 -9.0511 2.6973 18 6 -1.0647 -7.6976 2.9718 19 6 0.0007 -6.9451 2.5140 20 6 2.1340 -6.6720 -1.1657 21 8 1.9134 -6.1037 -2.2141 22 6 2.7860 -8.0307 -1.1678 23 6 3.0632 -8.4611 -2.6095 24 6 3.7146 -9.8201 -2.6117 25 6 3.2678 -10.9724 -3.2982 26 6 4.1861 -11.9172 -2.9840 27 8 5.0747 -11.3276 -2.1719 28 7 4.7972 -10.1669 -1.9773 29 1 -0.4849 0.8400 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6840 -3.7142 0.8921 32 1 2.6853 -3.7150 -0.8879 33 1 0.4381 -4.7622 -0.8899 34 1 0.4361 -4.7618 0.8901 35 1 2.4074 -5.9545 2.0032 36 1 3.0257 -7.3694 1.1178 37 1 1.7234 -9.3648 0.9154 38 1 -0.1699 -10.7069 1.7384 39 1 -1.9542 -9.6396 3.0577 40 1 -1.8493 -7.2288 3.5472 41 1 0.0487 -5.8884 2.7319 42 1 3.7246 -7.9842 -0.6157 43 1 2.1214 -8.7534 -0.6941 44 1 2.1246 -8.5077 -3.1617 45 1 3.7278 -7.7385 -3.0830 46 1 2.3972 -11.0749 -3.9289 47 1 4.1975 -12.9442 -3.3180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699983963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:13 Heat of formation + Delta-G solvation = 65.563675 kcal Electronic energy + Delta-G solvation = -29162.160265 eV Core-core repulsion = 25120.779496 eV Total energy + Delta-G solvation = -4041.380769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -45.21218 -40.29091 -39.02648 -36.21881 -35.45206 -34.51490 -32.55643 -31.99075 -31.42987 -31.00936 -30.86777 -28.14296 -26.39009 -25.38668 -23.46404 -23.37784 -22.73231 -21.73759 -21.54897 -20.88660 -18.96781 -18.17622 -17.79639 -17.28875 -17.14861 -16.71742 -16.05755 -15.71668 -15.47590 -15.06451 -15.00608 -14.59822 -14.09814 -13.85807 -13.65929 -13.61211 -13.51993 -13.21168 -13.04522 -12.98994 -12.74673 -12.58355 -12.38850 -12.14339 -11.86633 -11.48290 -11.25010 -11.16065 -11.12420 -10.94294 -10.86764 -10.65509 -10.31705 -10.05826 -9.95161 -9.77713 -9.61410 -9.07429 -8.98115 -8.85028 -8.53638 -6.90385 -5.73926 -3.02798 1.12112 1.20818 1.24346 1.93563 2.71305 2.96596 3.05454 3.45839 3.51502 3.53862 3.67311 3.89735 4.21251 4.54410 4.58052 4.63630 4.64348 4.75520 4.81440 4.85035 4.89012 4.96580 5.03401 5.13845 5.23550 5.29813 5.35495 5.47040 5.49099 5.54126 5.64144 5.67869 5.73829 5.81756 5.86302 5.87233 5.91036 6.05179 6.14115 6.28274 6.35720 6.40877 6.57963 6.76343 6.82845 6.94434 7.48297 7.73505 7.99016 8.27071 8.44750 9.55680 10.11995 10.47077 11.49125 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009280 B = 0.002776 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.457439 B =10085.624139 C =12532.983943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.908 3.092 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.292 1.292 7 C -0.235 4.235 8 H 0.070 0.930 9 N -0.730 5.730 10 C 0.143 3.857 11 C 0.109 3.891 12 N -0.601 5.601 13 C 0.145 3.855 14 C -0.104 4.104 15 C -0.112 4.112 16 C -0.123 4.123 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.100 4.100 20 C 0.514 3.486 21 O -0.529 6.529 22 C -0.139 4.139 23 C -0.028 4.028 24 C 0.020 3.980 25 C -0.231 4.231 26 C -0.062 4.062 27 O 0.098 5.902 28 N -0.363 5.363 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.017 0.983 32 H 0.024 0.976 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.098 0.902 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.172 0.828 47 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.637 -29.824 1.218 29.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.211 4.211 3 Si 0.739 3.261 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.375 5.375 10 C 0.014 3.986 11 C -0.013 4.013 12 N -0.333 5.333 13 C 0.021 3.979 14 C -0.105 4.105 15 C -0.131 4.131 16 C -0.141 4.141 17 C -0.138 4.138 18 C -0.136 4.136 19 C -0.119 4.119 20 C 0.302 3.698 21 O -0.405 6.405 22 C -0.180 4.180 23 C -0.066 4.066 24 C -0.139 4.139 25 C -0.252 4.252 26 C -0.144 4.144 27 O 0.031 5.969 28 N -0.067 5.067 29 H 0.064 0.936 30 H 0.217 0.783 31 H 0.035 0.965 32 H 0.042 0.958 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.116 0.884 43 H 0.114 0.886 44 H 0.113 0.887 45 H 0.112 0.888 46 H 0.189 0.811 47 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 3.529 -28.725 1.446 28.977 hybrid contribution -0.667 0.543 -0.480 0.985 sum 2.863 -28.183 0.966 28.344 Atomic orbital electron populations 1.69673 1.05092 1.25525 1.57960 1.24749 0.95563 0.97695 1.03076 0.86096 0.78790 0.84035 0.77169 1.20555 1.21825 1.21870 1.19253 0.91036 0.83971 1.42408 0.91164 1.42214 1.05835 0.99816 1.89623 1.20907 0.93889 0.85602 0.98160 1.21707 0.94743 0.81693 1.03150 1.47895 1.57371 1.22999 1.05063 1.20555 0.94326 0.96623 0.86352 1.20280 0.97530 0.94207 0.98469 1.21105 0.98565 0.93575 0.99823 1.21107 0.94637 0.99746 0.98585 1.21168 0.98713 0.95126 0.98750 1.21202 0.98259 0.94168 1.00001 1.21196 0.93574 1.00188 0.96893 1.20486 0.78718 0.87051 0.83534 1.90747 1.53927 1.65016 1.30859 1.21802 1.02523 0.95207 0.98450 1.19762 1.01207 0.88945 0.96692 1.23730 0.93724 0.98788 0.97609 1.22806 1.03800 0.92256 1.06347 1.26028 0.90934 1.01210 0.96201 1.84854 1.43765 1.17528 1.50719 1.73857 1.16802 0.94751 1.21267 0.93570 0.78306 0.96476 0.95779 0.89823 0.90605 0.88811 0.89356 0.86196 0.86232 0.86224 0.85892 0.85516 0.88424 0.88635 0.88682 0.88801 0.81074 0.76797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 2 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 4 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 6 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 8 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 9 N -0.73 -19.25 5.60 -59.90 -0.34 -19.59 16 10 C 0.14 3.06 6.58 -4.04 -0.03 3.04 16 11 C 0.11 1.90 5.50 -4.04 -0.02 1.88 16 12 N -0.60 -8.54 2.46 -175.06 -0.43 -8.97 16 13 C 0.14 1.58 5.40 -5.19 -0.03 1.55 16 14 C -0.10 -1.10 5.46 -104.62 -0.57 -1.68 16 15 C -0.11 -1.07 9.01 -39.58 -0.36 -1.43 16 16 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 17 C -0.12 -1.08 10.05 -39.59 -0.40 -1.48 16 18 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 19 C -0.10 -1.11 9.29 -39.58 -0.37 -1.47 16 20 C 0.51 7.61 7.66 -10.98 -0.08 7.53 16 21 O -0.53 -10.02 15.61 5.56 0.09 -9.93 16 22 C -0.14 -1.50 4.27 -27.89 -0.12 -1.62 16 23 C -0.03 -0.30 5.10 -27.89 -0.14 -0.44 16 24 C 0.02 0.20 6.59 -82.10 -0.54 -0.34 16 25 C -0.23 -1.65 11.12 -39.38 -0.44 -2.09 16 26 C -0.06 -0.36 12.30 29.74 0.37 0.01 16 27 O 0.10 0.87 11.20 17.16 0.19 1.06 16 28 N -0.36 -3.97 12.06 33.42 0.40 -3.56 16 29 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 30 H 0.38 10.49 7.67 -40.82 -0.31 10.17 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 1.63 7.50 -51.93 -0.39 1.24 16 34 H 0.08 1.22 6.95 -51.93 -0.36 0.86 16 35 H 0.09 1.01 8.09 -51.93 -0.42 0.59 16 36 H 0.09 0.79 6.17 -51.93 -0.32 0.47 16 37 H 0.12 0.97 6.10 -52.49 -0.32 0.65 16 38 H 0.12 0.82 8.06 -52.48 -0.42 0.39 16 39 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 40 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.13 1.40 7.41 -52.49 -0.39 1.02 16 42 H 0.10 0.99 7.25 -51.93 -0.38 0.61 16 43 H 0.10 0.89 5.30 -51.92 -0.28 0.61 16 44 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 45 H 0.09 1.12 8.10 -51.93 -0.42 0.70 16 46 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 47 H 0.22 0.25 8.06 -52.48 -0.42 -0.17 16 LS Contribution 396.10 15.07 5.97 5.97 Total: -1.00 -35.97 396.10 -8.69 -44.67 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -6.51 Total: 7.62 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.77 Total: -7.14 kcal Atomic # 7 Polarization: -60.56 SS G_CDS: 0.36 Total: -60.20 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.28 Total: -8.87 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.97 -8.69 -44.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699983963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.231 kcal (2) G-P(sol) polarization free energy of solvation -35.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.667 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds