Wall clock time and date at job start Wed Apr 1 2020 02:39:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86795 * 120.00100 * 2 1 4 4 H 1.48503 * 109.47194 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47157 * 299.99761 * 3 2 1 6 6 H 1.48497 * 109.47302 * 59.99948 * 3 2 1 7 7 C 1.38819 * 119.99471 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99445 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00263 * 0.02562 * 7 2 1 10 10 C 1.46502 * 119.99804 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.46888 * 180.02562 * 10 9 7 12 12 N 1.46502 * 109.46888 * 179.97438 * 11 10 9 13 13 C 1.46499 * 120.00006 * 89.99527 * 12 11 10 14 14 C 1.50707 * 109.46838 * 84.43909 * 13 12 11 15 15 C 1.38234 * 120.00218 * 94.99710 * 14 13 12 16 16 C 1.38233 * 119.99688 * 179.97438 * 15 14 13 17 17 C 1.38236 * 120.00162 * 359.97438 * 16 15 14 18 18 C 1.38225 * 120.00163 * 0.27898 * 17 16 15 19 19 C 1.38233 * 119.99415 * 274.97411 * 14 13 12 20 20 C 1.34776 * 119.99736 * 269.99654 * 12 11 10 21 21 O 1.21278 * 120.00336 * 5.04590 * 20 12 11 22 22 C 1.50704 * 119.99957 * 185.04155 * 20 12 11 23 23 C 1.52991 * 109.47282 * 179.97438 * 22 20 12 24 24 C 1.50703 * 109.47411 * 180.02562 * 23 22 20 25 25 C 1.41378 * 126.80520 * 124.70964 * 24 23 22 26 26 C 1.35445 * 103.98437 * 179.88903 * 25 24 23 27 27 O 1.34046 * 106.45071 * 0.37010 * 26 25 24 28 28 N 1.20920 * 111.56048 * 359.74664 * 27 26 25 29 29 H 0.96992 * 119.99512 * 359.97438 * 1 2 3 30 30 H 0.97001 * 119.99962 * 359.97438 * 9 7 2 31 31 H 1.08994 * 109.47394 * 59.99831 * 10 9 7 32 32 H 1.09004 * 109.46889 * 299.99586 * 10 9 7 33 33 H 1.08994 * 109.47316 * 59.99691 * 11 10 9 34 34 H 1.09004 * 109.46943 * 299.99461 * 11 10 9 35 35 H 1.08998 * 109.47559 * 324.43924 * 13 12 11 36 36 H 1.08998 * 109.47224 * 204.43361 * 13 12 11 37 37 H 1.07999 * 120.00279 * 359.97438 * 15 14 13 38 38 H 1.08007 * 119.99707 * 180.02562 * 16 15 14 39 39 H 1.08000 * 119.99958 * 179.97438 * 17 16 15 40 40 H 1.07998 * 120.00053 * 179.72465 * 18 17 16 41 41 H 1.08000 * 120.00480 * 0.02562 * 19 14 13 42 42 H 1.08998 * 109.47412 * 299.97255 * 22 20 12 43 43 H 1.09010 * 109.46883 * 59.96486 * 22 20 12 44 44 H 1.09004 * 109.47287 * 300.00062 * 23 22 20 45 45 H 1.08996 * 109.47290 * 60.00116 * 23 22 20 46 46 H 1.07994 * 128.00485 * 0.02729 * 25 24 23 47 47 H 1.08003 * 126.77751 * 180.09907 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0903 -1.2023 0.0001 9 7 1.3255 -2.3881 0.0005 10 6 2.0580 -3.6569 0.0017 11 6 1.0637 -4.8197 0.0008 12 7 1.7962 -6.0885 0.0013 13 6 2.1615 -6.7229 1.2703 14 6 1.0023 -7.5442 1.7732 15 6 0.9409 -8.8967 1.4942 16 6 -0.1221 -9.6501 1.9560 17 6 -1.1235 -9.0511 2.6973 18 6 -1.0647 -7.6976 2.9718 19 6 0.0007 -6.9451 2.5140 20 6 2.1340 -6.6720 -1.1657 21 8 1.9134 -6.1037 -2.2141 22 6 2.7860 -8.0307 -1.1678 23 6 3.0632 -8.4611 -2.6095 24 6 3.7146 -9.8201 -2.6117 25 6 3.2678 -10.9724 -3.2982 26 6 4.1861 -11.9172 -2.9840 27 8 5.0747 -11.3276 -2.1719 28 7 4.7972 -10.1669 -1.9773 29 1 -0.4849 0.8400 0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.6840 -3.7142 0.8921 32 1 2.6853 -3.7150 -0.8879 33 1 0.4381 -4.7622 -0.8899 34 1 0.4361 -4.7618 0.8901 35 1 2.4074 -5.9545 2.0032 36 1 3.0257 -7.3694 1.1178 37 1 1.7234 -9.3648 0.9154 38 1 -0.1699 -10.7069 1.7384 39 1 -1.9542 -9.6396 3.0577 40 1 -1.8493 -7.2288 3.5472 41 1 0.0487 -5.8884 2.7319 42 1 3.7246 -7.9842 -0.6157 43 1 2.1214 -8.7534 -0.6941 44 1 2.1246 -8.5077 -3.1617 45 1 3.7278 -7.7385 -3.0830 46 1 2.3972 -11.0749 -3.9289 47 1 4.1975 -12.9442 -3.3180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699983963.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:39:11 Heat of formation + Delta-G solvation = 43.744956 kcal Electronic energy + Delta-G solvation = -29163.106396 eV Core-core repulsion = 25120.779496 eV Total energy + Delta-G solvation = -4042.326899 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.84774 -41.39377 -39.89873 -37.56262 -36.30404 -36.25615 -33.80541 -33.01125 -32.30923 -32.18802 -31.73200 -29.73436 -27.29455 -26.73673 -25.14208 -24.02217 -23.52888 -23.15797 -22.55191 -21.63121 -20.13829 -19.23954 -18.85735 -18.46103 -18.10581 -17.70871 -17.35926 -16.75067 -16.54755 -16.21616 -15.86202 -15.69853 -15.48610 -15.31554 -15.15308 -14.68188 -14.58765 -14.33468 -14.17546 -14.01887 -13.55568 -13.44758 -13.25112 -13.18111 -13.04887 -12.91620 -12.87856 -12.54054 -12.42499 -12.14676 -12.08941 -11.94402 -11.89588 -11.83196 -11.05787 -11.01220 -10.84745 -10.49621 -9.87664 -9.81041 -9.68266 -9.08885 -8.00045 -5.30773 0.35372 0.50381 0.68321 1.31327 1.44342 1.46244 1.53029 1.56446 1.91744 2.52980 2.54388 2.90055 3.18514 3.33208 3.49393 3.66321 3.78003 3.79644 3.92248 4.02540 4.09332 4.12614 4.18908 4.22883 4.26977 4.28987 4.33953 4.46083 4.52774 4.60325 4.62039 4.68040 4.74643 4.75300 4.90349 4.97903 5.04444 5.05426 5.09031 5.15791 5.21544 5.36968 5.45943 5.56449 5.63336 5.66951 6.10741 6.21520 6.31657 7.08046 7.27662 7.40921 7.98714 8.24642 9.23537 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009280 B = 0.002776 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3016.457439 B =10085.624139 C =12532.983943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.967 5.967 2 C -0.073 4.073 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.292 1.292 6 H -0.287 1.287 7 C -0.249 4.249 8 H 0.072 0.928 9 N -0.742 5.742 10 C 0.150 3.850 11 C 0.127 3.873 12 N -0.597 5.597 13 C 0.143 3.857 14 C -0.114 4.114 15 C -0.115 4.115 16 C -0.125 4.125 17 C -0.122 4.122 18 C -0.131 4.131 19 C -0.120 4.120 20 C 0.510 3.490 21 O -0.578 6.578 22 C -0.124 4.124 23 C -0.024 4.024 24 C 0.004 3.996 25 C -0.242 4.242 26 C -0.041 4.041 27 O 0.090 5.910 28 N -0.394 5.394 29 H 0.254 0.746 30 H 0.375 0.625 31 H 0.029 0.971 32 H 0.001 0.999 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.132 0.868 41 H 0.117 0.883 42 H 0.108 0.892 43 H 0.117 0.883 44 H 0.095 0.905 45 H 0.072 0.928 46 H 0.192 0.808 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.265 -32.647 1.715 32.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.806 3.194 4 H -0.192 1.192 5 H -0.219 1.219 6 H -0.214 1.214 7 C -0.381 4.381 8 H 0.090 0.910 9 N -0.385 5.385 10 C 0.022 3.978 11 C 0.003 3.997 12 N -0.329 5.329 13 C 0.021 3.979 14 C -0.115 4.115 15 C -0.133 4.133 16 C -0.143 4.143 17 C -0.140 4.140 18 C -0.149 4.149 19 C -0.139 4.139 20 C 0.299 3.701 21 O -0.458 6.458 22 C -0.163 4.163 23 C -0.063 4.063 24 C -0.154 4.154 25 C -0.264 4.264 26 C -0.122 4.122 27 O 0.024 5.976 28 N -0.099 5.099 29 H 0.062 0.938 30 H 0.207 0.793 31 H 0.047 0.953 32 H 0.019 0.981 33 H 0.077 0.923 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.131 0.869 37 H 0.154 0.846 38 H 0.163 0.837 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.135 0.865 42 H 0.126 0.874 43 H 0.135 0.865 44 H 0.114 0.886 45 H 0.090 0.910 46 H 0.209 0.791 47 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 4.191 -31.594 1.979 31.932 hybrid contribution -0.866 1.292 -0.642 1.683 sum 3.324 -30.302 1.336 30.513 Atomic orbital electron populations 1.69824 1.06592 1.26251 1.59091 1.25623 0.96523 1.01200 1.03222 0.85022 0.78085 0.79397 0.76922 1.19219 1.21892 1.21356 1.19609 0.91366 0.85200 1.41880 0.90998 1.42385 1.05646 1.00938 1.89557 1.20936 0.94308 0.85287 0.97249 1.21286 0.93759 0.82082 1.02573 1.47942 1.56650 1.21746 1.06514 1.20768 0.95508 0.96981 0.84622 1.20231 0.97330 0.94843 0.99126 1.21320 0.99255 0.93049 0.99717 1.21459 0.94016 1.01013 0.97765 1.21496 0.99414 0.94839 0.98219 1.21417 0.98265 0.94908 1.00269 1.21271 0.94550 1.00061 0.97973 1.21244 0.77909 0.88141 0.82760 1.90724 1.55945 1.66481 1.32616 1.21745 1.02800 0.92736 0.99064 1.19629 1.00876 0.89394 0.96354 1.23719 0.94051 0.98942 0.98656 1.23111 1.05043 0.91471 1.06746 1.26872 0.88918 1.02523 0.93872 1.84807 1.44487 1.16999 1.51328 1.73857 1.17544 0.95894 1.22650 0.93765 0.79265 0.95299 0.98090 0.92260 0.89246 0.88801 0.86936 0.84608 0.83707 0.84004 0.84969 0.86511 0.87390 0.86500 0.88643 0.90952 0.79109 0.72219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.75 13.06 21.65 0.28 -60.46 16 2 C -0.07 -4.36 5.50 84.86 0.47 -3.89 16 3 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 4 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 7 C -0.25 -14.68 9.99 84.04 0.84 -13.84 16 8 H 0.07 4.12 7.83 -2.91 -0.02 4.10 16 9 N -0.74 -40.31 5.60 -343.44 -1.92 -42.23 16 10 C 0.15 6.63 6.58 86.38 0.57 7.20 16 11 C 0.13 4.57 5.50 86.38 0.48 5.04 16 12 N -0.60 -17.12 2.46 -826.14 -2.03 -19.15 16 13 C 0.14 3.00 5.40 85.64 0.46 3.46 16 14 C -0.11 -2.31 5.46 -19.86 -0.11 -2.42 16 15 C -0.12 -1.93 9.01 22.27 0.20 -1.73 16 16 C -0.12 -1.88 10.05 22.27 0.22 -1.65 16 17 C -0.12 -1.94 10.05 22.27 0.22 -1.71 16 18 C -0.13 -2.49 10.05 22.27 0.22 -2.26 16 19 C -0.12 -2.61 9.29 22.27 0.21 -2.41 16 20 C 0.51 15.32 7.66 87.66 0.67 15.99 16 21 O -0.58 -22.91 15.61 -3.02 -0.05 -22.95 16 22 C -0.12 -2.57 4.27 29.85 0.13 -2.44 16 23 C -0.02 -0.51 5.10 29.85 0.15 -0.36 16 24 C 0.00 0.08 6.59 43.58 0.29 0.37 16 25 C -0.24 -2.87 11.12 22.40 0.25 -2.63 16 26 C -0.04 -0.33 12.30 67.17 0.83 0.49 16 27 O 0.09 1.41 11.20 71.58 0.80 2.21 16 28 N -0.39 -8.14 12.06 -49.55 -0.60 -8.74 16 29 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.38 21.31 7.67 -92.71 -0.71 20.60 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.06 2.44 7.50 -2.39 -0.02 2.42 16 34 H 0.09 2.97 6.95 -2.39 -0.02 2.96 16 35 H 0.09 1.98 8.09 -2.39 -0.02 1.96 16 36 H 0.11 1.81 6.17 -2.39 -0.01 1.79 16 37 H 0.14 1.77 6.10 -2.91 -0.02 1.75 16 38 H 0.15 1.42 8.06 -2.91 -0.02 1.39 16 39 H 0.14 1.57 8.06 -2.91 -0.02 1.54 16 40 H 0.13 2.14 8.06 -2.91 -0.02 2.12 16 41 H 0.12 2.67 7.41 -2.91 -0.02 2.65 16 42 H 0.11 2.05 7.25 -2.39 -0.02 2.04 16 43 H 0.12 1.93 5.30 -2.38 -0.01 1.92 16 44 H 0.10 1.98 8.09 -2.38 -0.02 1.96 16 45 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 46 H 0.19 1.35 8.06 -2.91 -0.02 1.33 16 47 H 0.26 -0.69 8.06 -2.91 -0.02 -0.71 16 Total: -1.00 -80.09 396.10 4.89 -75.20 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.28 Total: 29.28 kcal Atomic # 6 Polarization: -8.87 SS G_CDS: 6.10 Total: -2.77 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -4.27 Total: -130.58 kcal Atomic # 8 Polarization: -21.49 SS G_CDS: 0.75 Total: -20.74 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -80.09 4.89 -75.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699983963.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.940 kcal (2) G-P(sol) polarization free energy of solvation -80.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds