Wall clock time and date at job start Wed Apr 1 2020 02:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00175 * 2 1 4 4 H 1.48495 * 109.47180 * 274.48200 * 3 2 1 5 5 H 1.48500 * 109.46927 * 34.47868 * 3 2 1 6 6 H 1.48496 * 109.46945 * 154.47794 * 3 2 1 7 7 C 1.38809 * 120.00014 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00481 * 163.54456 * 7 2 1 9 9 N 1.36942 * 119.99831 * 343.54771 * 7 2 1 10 10 C 1.47167 * 120.70921 * 154.46844 * 9 7 2 11 11 C 1.53886 * 108.02942 * 132.75406 * 10 9 7 12 12 H 1.08999 * 112.09333 * 181.91250 * 11 10 9 13 13 C 1.54797 * 107.88434 * 306.48141 * 11 10 9 14 14 C 1.54279 * 104.72943 * 89.01197 * 13 11 10 15 15 C 1.54547 * 104.94265 * 0.07988 * 14 13 11 16 16 H 1.09003 * 112.18032 * 146.35865 * 15 14 13 17 17 C 1.48358 * 120.34715 * 334.31169 * 9 7 2 18 18 N 1.48306 * 107.20573 * 58.36566 * 11 10 9 19 19 C 1.34776 * 128.08146 * 106.72582 * 18 11 10 20 20 O 1.21277 * 120.00422 * 179.97438 * 19 18 11 21 21 C 1.50700 * 119.99719 * 359.96859 * 19 18 11 22 22 N 1.46494 * 109.47328 * 180.02562 * 21 19 18 23 23 C 1.34776 * 120.00232 * 179.97438 * 22 21 19 24 24 O 1.21549 * 119.99954 * 0.02562 * 23 22 21 25 25 C 1.47847 * 120.00197 * 180.02562 * 23 22 21 26 26 C 1.39580 * 120.14122 * 359.72372 * 25 23 22 27 27 C 1.37958 * 119.84720 * 179.79315 * 26 25 23 28 28 C 1.38360 * 120.15004 * 0.48508 * 27 26 25 29 29 C 1.38363 * 120.28888 * 359.74754 * 28 27 26 30 30 C 1.37961 * 120.14566 * 0.02562 * 29 28 27 31 31 H 0.97000 * 120.00134 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.75038 * 13.11963 * 10 9 7 33 33 H 1.09001 * 109.78842 * 252.41374 * 10 9 7 34 34 H 1.09002 * 110.39811 * 330.22677 * 13 11 10 35 35 H 1.08994 * 110.44580 * 207.83008 * 13 11 10 36 36 H 1.09002 * 110.36747 * 241.18189 * 14 13 11 37 37 H 1.09002 * 110.36407 * 118.97737 * 14 13 11 38 38 H 1.09002 * 109.49798 * 107.72504 * 17 9 7 39 39 H 1.09004 * 110.61817 * 346.60472 * 17 9 7 40 40 H 1.09004 * 109.46900 * 300.00408 * 21 19 18 41 41 H 1.09002 * 109.47415 * 60.00114 * 21 19 18 42 42 H 0.96997 * 120.00242 * 0.02562 * 22 21 19 43 43 H 1.07999 * 120.07517 * 0.02562 * 26 25 23 44 44 H 1.07999 * 119.92666 * 180.23502 * 27 26 25 45 45 H 1.07995 * 119.85375 * 179.72829 * 28 27 26 46 46 H 1.08001 * 119.92580 * 179.97438 * 29 28 27 47 47 H 1.08004 * 120.07233 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4030 2.1011 -1.3957 5 1 1.4982 2.6235 0.7926 6 1 3.5919 1.4146 0.6032 7 6 2.0102 -1.2021 -0.0005 8 1 3.0571 -1.2212 -0.2655 9 7 1.3676 -2.3639 0.3348 10 6 1.8496 -3.6610 -0.1661 11 6 1.9007 -4.6404 1.0198 12 1 2.2829 -5.6185 0.7276 13 6 2.7402 -3.9840 2.1425 14 6 1.7207 -3.1796 2.9754 15 6 0.3603 -3.4235 2.2838 16 1 -0.4650 -3.4457 2.9955 17 6 0.1732 -2.3329 1.2143 18 7 0.5311 -4.7193 1.5830 19 6 -0.3522 -5.7323 1.4820 20 8 -1.4424 -5.6408 2.0053 21 6 0.0150 -6.9788 0.7187 22 7 -1.1056 -7.9217 0.7552 23 6 -1.0040 -9.1135 0.1343 24 8 0.0176 -9.4063 -0.4557 25 6 -2.1351 -10.0649 0.1706 26 6 -3.3075 -9.7341 0.8521 27 6 -4.3609 -10.6246 0.8785 28 6 -4.2533 -11.8474 0.2400 29 6 -3.0921 -12.1834 -0.4331 30 6 -2.0330 -11.3001 -0.4712 31 1 -0.4850 0.8400 -0.0004 32 1 2.8467 -3.5444 -0.5908 33 1 1.1672 -4.0394 -0.9272 34 1 3.4908 -3.3184 1.7160 35 1 3.2152 -4.7474 2.7587 36 1 1.9700 -2.1186 2.9585 37 1 1.6957 -3.5462 4.0016 38 1 -0.7186 -2.5447 0.6244 39 1 0.0753 -1.3592 1.6944 40 1 0.2371 -6.7188 -0.3163 41 1 0.8921 -7.4386 1.1741 42 1 -1.9210 -7.6879 1.2257 43 1 -3.3912 -8.7816 1.3543 44 1 -5.2700 -10.3684 1.4022 45 1 -5.0792 -12.5426 0.2675 46 1 -3.0143 -13.1396 -0.9291 47 1 -1.1270 -11.5637 -0.9967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752544516.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:53:34 Heat of formation + Delta-G solvation = -0.627913 kcal Electronic energy + Delta-G solvation = -29860.941815 eV Core-core repulsion = 25816.690764 eV Total energy + Delta-G solvation = -4044.251051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.58120 -40.03709 -38.57057 -37.81199 -34.59033 -34.13604 -31.86274 -31.32761 -31.23955 -31.13089 -30.36505 -27.81614 -26.18363 -23.97645 -23.72118 -23.01209 -22.67067 -20.93519 -20.61694 -20.17145 -18.84981 -18.04572 -17.18689 -16.44706 -16.23435 -16.01118 -15.72290 -15.37683 -15.20729 -14.70675 -14.62789 -14.50796 -14.33226 -13.87797 -13.51875 -13.43275 -13.24846 -12.98739 -12.85253 -12.77439 -12.37428 -12.16556 -11.98432 -11.95436 -11.56286 -11.40382 -11.18554 -10.87834 -10.61328 -10.56091 -10.42602 -10.16610 -10.04669 -9.90637 -9.75605 -9.63183 -9.41614 -9.31122 -9.15979 -8.60903 -8.35137 -6.78345 -5.86355 -3.28366 0.56935 1.05092 2.65588 2.73639 2.79627 3.32331 3.39325 3.40729 3.41860 3.61559 4.40733 4.43924 4.49739 4.57320 4.62283 4.82803 4.99492 5.05532 5.16855 5.18687 5.25612 5.31563 5.32807 5.37434 5.49321 5.50344 5.66011 5.69980 5.73744 5.97294 6.00359 6.05353 6.08500 6.11614 6.15498 6.26676 6.34399 6.35424 6.52568 6.55170 6.56020 6.68772 6.88585 7.20210 7.34814 7.47504 7.69415 7.90697 8.03931 8.28227 8.31663 9.07665 9.71767 10.28110 11.22300 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.023017 B = 0.002268 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.207818 B =12345.202509 C =12522.905295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.003 3.997 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.253 4.253 8 H 0.069 0.931 9 N -0.590 5.590 10 C 0.138 3.862 11 C 0.103 3.897 12 H 0.089 0.911 13 C -0.110 4.110 14 C -0.113 4.113 15 C 0.106 3.894 16 H 0.088 0.912 17 C 0.175 3.825 18 N -0.599 5.599 19 C 0.525 3.475 20 O -0.555 6.555 21 C 0.105 3.895 22 N -0.711 5.711 23 C 0.560 3.440 24 O -0.539 6.539 25 C -0.132 4.132 26 C -0.084 4.084 27 C -0.127 4.127 28 C -0.096 4.096 29 C -0.130 4.130 30 C -0.060 4.060 31 H 0.255 0.745 32 H 0.066 0.934 33 H 0.020 0.980 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.026 0.974 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.097 0.903 42 H 0.411 0.589 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.126 0.874 46 H 0.129 0.871 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.640 -19.996 3.852 20.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.196 4.196 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.382 4.382 8 H 0.086 0.914 9 N -0.314 5.314 10 C 0.011 3.989 11 C -0.002 4.002 12 H 0.107 0.893 13 C -0.148 4.148 14 C -0.151 4.151 15 C 0.002 3.998 16 H 0.106 0.894 17 C 0.049 3.951 18 N -0.331 5.331 19 C 0.313 3.687 20 O -0.435 6.435 21 C -0.022 4.022 22 N -0.366 5.366 23 C 0.347 3.653 24 O -0.417 6.417 25 C -0.135 4.135 26 C -0.103 4.103 27 C -0.145 4.145 28 C -0.114 4.114 29 C -0.148 4.148 30 C -0.079 4.079 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.038 0.962 34 H 0.103 0.897 35 H 0.073 0.927 36 H 0.106 0.894 37 H 0.070 0.930 38 H 0.044 0.956 39 H 0.112 0.888 40 H 0.118 0.882 41 H 0.115 0.885 42 H 0.250 0.750 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.144 0.856 46 H 0.147 0.853 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.645 -20.026 3.695 20.687 hybrid contribution -0.043 1.093 0.079 1.096 sum -3.688 -18.933 3.774 19.655 Atomic orbital electron populations 1.70024 1.05245 1.25636 1.53922 1.25024 0.95287 0.98396 1.00904 0.86284 0.79132 0.83729 0.77641 1.21514 1.21579 1.20394 1.19161 0.92425 0.84405 1.42208 0.91368 1.44359 1.32119 1.00896 1.53999 1.21441 0.98506 0.86931 0.92034 1.23183 0.81340 0.99316 0.96382 0.89290 1.22329 0.97867 0.98599 0.96011 1.22326 0.94076 1.01892 0.96817 1.23268 0.97672 0.83013 0.95840 0.89392 1.21501 0.88682 0.95709 0.89219 1.49134 1.15419 1.16296 1.52287 1.19860 0.84143 0.83674 0.81016 1.90650 1.22148 1.81143 1.49553 1.21045 0.90443 0.88458 1.02214 1.45628 1.19157 1.16289 1.55512 1.18246 0.87303 0.81208 0.78539 1.90775 1.30679 1.76815 1.43459 1.19917 0.94703 0.96046 1.02865 1.21442 0.92432 0.99602 0.96810 1.21144 0.98918 0.94169 1.00311 1.21399 0.97702 0.96484 0.95837 1.21173 0.93428 0.99941 1.00286 1.21302 0.99015 0.91723 0.95832 0.93503 0.91549 0.96248 0.89713 0.92722 0.89395 0.93043 0.95605 0.88766 0.88204 0.88506 0.74974 0.85239 0.85256 0.85571 0.85290 0.84558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.32 11.11 55.49 0.62 -24.70 16 2 C 0.00 0.07 4.96 -17.43 -0.09 -0.02 16 3 Si 0.90 20.76 29.58 -169.99 -5.03 15.73 16 4 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.25 -6.40 9.64 -15.06 -0.15 -6.54 16 8 H 0.07 1.68 7.87 -52.48 -0.41 1.27 16 9 N -0.59 -13.54 2.31 -170.09 -0.39 -13.93 16 10 C 0.14 2.62 6.03 -3.22 -0.02 2.60 16 11 C 0.10 1.59 3.99 -65.53 -0.26 1.33 16 12 H 0.09 1.12 7.41 -51.93 -0.38 0.74 16 13 C -0.11 -1.63 6.21 -25.12 -0.16 -1.79 16 14 C -0.11 -1.85 6.17 -25.25 -0.16 -2.01 16 15 C 0.11 1.97 4.07 -65.66 -0.27 1.70 16 16 H 0.09 1.65 7.93 -51.93 -0.41 1.24 16 17 C 0.17 3.99 4.63 -2.55 -0.01 3.98 16 18 N -0.60 -10.26 2.75 -152.89 -0.42 -10.68 16 19 C 0.53 8.79 7.99 -10.99 -0.09 8.71 16 20 O -0.56 -10.61 15.98 5.56 0.09 -10.53 16 21 C 0.11 1.46 5.14 -5.20 -0.03 1.44 16 22 N -0.71 -9.44 5.48 -62.43 -0.34 -9.79 16 23 C 0.56 7.66 7.77 -12.33 -0.10 7.57 16 24 O -0.54 -8.81 16.35 5.32 0.09 -8.72 16 25 C -0.13 -1.50 5.87 -104.97 -0.62 -2.12 16 26 C -0.08 -0.80 9.54 -39.18 -0.37 -1.18 16 27 C -0.13 -1.00 10.03 -39.64 -0.40 -1.40 16 28 C -0.10 -0.69 10.04 -39.49 -0.40 -1.08 16 29 C -0.13 -1.02 10.03 -39.64 -0.40 -1.42 16 30 C -0.06 -0.60 9.60 -39.19 -0.38 -0.98 16 31 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 32 H 0.07 1.18 7.96 -51.93 -0.41 0.77 16 33 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 1.33 7.85 -51.93 -0.41 0.93 16 35 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.59 7.83 -51.93 -0.41 1.19 16 37 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 2.37 6.35 -51.93 -0.33 2.04 16 40 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 41 H 0.10 1.22 8.04 -51.93 -0.42 0.80 16 42 H 0.41 5.20 5.47 -40.82 -0.22 4.98 16 43 H 0.13 1.12 6.41 -52.49 -0.34 0.78 16 44 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 45 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 46 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 47 H 0.14 1.36 7.65 -52.48 -0.40 0.96 16 LS Contribution 380.56 15.07 5.73 5.73 Total: -1.00 -31.58 380.56 -10.19 -41.77 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.66 Total: 6.32 kcal Atomic # 6 Polarization: 12.66 SS G_CDS: -3.87 Total: 8.79 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: -0.54 Total: -59.10 kcal Atomic # 8 Polarization: -19.42 SS G_CDS: 0.18 Total: -19.25 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.58 -10.19 -41.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752544516.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.145 kcal (2) G-P(sol) polarization free energy of solvation -31.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds