Wall clock time and date at job start Wed Apr 1 2020 01:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38364 * 119.85076 * 2 1 4 4 C 1.37950 * 120.15023 * 179.97438 * 3 2 1 5 5 C 1.39602 * 119.85032 * 0.02562 * 4 3 2 6 6 C 1.47646 * 120.14937 * 179.97438 * 5 4 3 7 7 N 1.29077 * 125.86686 * 359.97438 * 6 5 4 8 8 O 1.41385 * 112.87393 * 180.32883 * 7 6 5 9 9 C 1.44206 * 107.59824 * 342.50038 * 8 7 6 10 10 H 1.09000 * 110.97102 * 267.25664 * 9 8 7 11 11 C 1.50694 * 110.97702 * 143.51945 * 9 8 7 12 12 O 1.21284 * 119.99884 * 359.50074 * 11 9 8 13 13 N 1.34775 * 120.00363 * 179.49688 * 11 9 8 14 14 C 1.46957 * 120.59559 * 179.97438 * 13 11 9 15 15 C 1.53378 * 108.63600 * 235.20737 * 14 13 11 16 16 N 1.46960 * 108.63441 * 310.57541 * 15 14 13 17 17 C 1.36929 * 120.59772 * 235.19929 * 16 15 14 18 18 H 1.08001 * 120.00154 * 26.80307 * 17 16 15 19 19 C 1.38818 * 120.00276 * 206.52209 * 17 16 15 20 20 N 1.31616 * 120.00013 * 217.35632 * 19 17 16 21 21 Si 1.86795 * 119.99797 * 37.35637 * 19 17 16 22 22 H 1.48497 * 109.47307 * 95.28345 * 21 19 17 23 23 H 1.48499 * 109.46918 * 215.28171 * 21 19 17 24 24 H 1.48500 * 109.47058 * 335.28197 * 21 19 17 25 25 C 1.46972 * 118.81093 * 55.48291 * 16 15 14 26 26 C 1.46973 * 120.59035 * 359.97438 * 13 11 9 27 27 C 1.51757 * 125.85390 * 179.97438 * 6 5 4 28 28 C 1.39609 * 119.70609 * 0.25442 * 5 4 3 29 29 C 1.37958 * 119.84657 * 359.48976 * 28 5 4 30 30 H 1.09006 * 109.46507 * 90.00034 * 1 2 3 31 31 H 1.08999 * 109.46940 * 210.00159 * 1 2 3 32 32 H 1.09000 * 109.46934 * 330.00665 * 1 2 3 33 33 H 1.08000 * 119.91972 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.07174 * 179.97438 * 4 3 2 35 35 H 1.09004 * 109.60829 * 115.46529 * 14 13 11 36 36 H 1.08993 * 109.75563 * 355.03988 * 14 13 11 37 37 H 1.09001 * 109.60979 * 190.83526 * 15 14 13 38 38 H 1.08997 * 109.60544 * 70.32236 * 15 14 13 39 39 H 0.97000 * 120.00046 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.61298 * 64.25873 * 25 16 15 41 41 H 1.08995 * 109.61261 * 184.77395 * 25 16 15 42 42 H 1.08994 * 109.60538 * 244.53503 * 26 13 11 43 43 H 1.09001 * 109.60973 * 5.04778 * 26 13 11 44 44 H 1.09005 * 110.78479 * 77.11941 * 27 6 5 45 45 H 1.08998 * 110.82654 * 313.63366 * 27 6 5 46 46 H 1.07998 * 120.08447 * 179.72276 * 28 5 4 47 47 H 1.08000 * 119.93348 * 180.23033 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 6 3.5752 1.2073 0.0005 5 6 4.2764 0.0001 0.0005 6 6 5.7528 0.0001 0.0005 7 7 6.5091 1.0461 0.0001 8 8 7.8867 0.7283 -0.0073 9 6 8.0187 -0.6483 0.4014 10 1 8.1761 -0.7224 1.4775 11 6 9.1315 -1.3304 -0.3518 12 8 9.7678 -0.7158 -1.1815 13 7 9.4198 -2.6233 -0.1035 14 6 10.5018 -3.3014 -0.8308 15 6 9.9316 -4.5604 -1.4957 16 7 9.1698 -5.3173 -0.4924 17 6 9.4625 -6.6309 -0.2401 18 1 10.4606 -7.0048 -0.4142 19 6 8.4778 -7.4807 0.2449 20 7 8.7834 -8.4030 1.1328 21 14 6.7192 -7.3153 -0.3625 22 1 6.4883 -8.2701 -1.4762 23 1 5.7813 -7.6153 0.7490 24 1 6.4899 -5.9291 -0.8433 25 6 8.0839 -4.6407 0.2309 26 6 8.6576 -3.3802 0.8996 27 6 6.6417 -1.2299 0.0011 28 6 3.5753 -1.2072 -0.0054 29 6 2.1957 -1.2000 -0.0005 30 1 -0.3632 0.0000 -1.0278 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.6520 2.1332 -0.0004 34 1 4.1115 2.1447 0.0001 35 1 11.2916 -3.5816 -0.1337 36 1 10.9064 -2.6362 -1.5936 37 1 10.7476 -5.1752 -1.8755 38 1 9.2731 -4.2746 -2.3159 39 1 8.0955 -8.9971 1.4715 40 1 7.2969 -4.3604 -0.4692 41 1 7.6794 -5.3084 0.9916 42 1 9.3159 -3.6660 1.7200 43 1 7.8414 -2.7656 1.2793 44 1 6.6841 -1.6769 -0.9922 45 1 6.2989 -1.9554 0.7388 46 1 4.1116 -2.1446 -0.0100 47 1 1.6520 -2.1332 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900776126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:25 Heat of formation + Delta-G solvation = 54.583924 kcal Electronic energy + Delta-G solvation = -30044.472917 eV Core-core repulsion = 26002.616031 eV Total energy + Delta-G solvation = -4041.856886 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.97504 -39.72811 -38.92919 -37.09198 -34.46214 -34.14140 -32.20807 -31.88652 -31.50429 -31.16428 -30.22827 -27.48308 -27.36230 -24.97337 -23.40710 -23.36703 -22.67065 -22.60146 -21.03300 -20.12760 -18.98540 -17.81294 -17.31844 -16.59852 -16.13760 -15.92617 -15.68327 -15.54007 -15.16289 -14.91416 -14.58718 -14.39177 -14.27526 -14.06187 -13.84831 -13.80927 -13.51259 -13.29086 -13.05267 -12.90882 -12.74787 -12.62691 -12.38071 -12.26358 -12.05352 -11.86442 -11.71572 -11.49045 -11.19076 -10.94218 -10.83438 -10.59998 -10.49988 -10.31407 -10.22469 -9.61230 -9.55034 -9.33724 -8.86981 -8.69762 -8.36716 -7.15092 -6.20347 -3.39801 0.36041 1.03788 1.91720 2.45447 2.60637 3.22410 3.26778 3.37706 3.42944 3.43412 3.69302 4.15081 4.19301 4.39510 4.42303 4.47706 4.50874 4.62849 4.66447 4.72572 4.94427 5.00117 5.03730 5.13925 5.19668 5.26645 5.30781 5.34621 5.42698 5.46202 5.49811 5.65752 5.66591 5.69561 5.75811 5.92350 5.97609 6.03101 6.07084 6.12132 6.19194 6.37610 6.43251 6.54399 6.61086 6.74593 7.09630 7.52125 7.75999 8.14214 8.20574 8.76636 9.55239 9.94386 10.93927 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.003533 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.787205 B = 7923.666869 C =10348.446012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.067 4.067 3 C -0.125 4.125 4 C -0.074 4.074 5 C -0.048 4.048 6 C 0.128 3.872 7 N -0.284 5.284 8 O -0.163 6.163 9 C 0.029 3.971 10 H 0.113 0.887 11 C 0.517 3.483 12 O -0.528 6.528 13 N -0.592 5.592 14 C 0.097 3.903 15 C 0.132 3.868 16 N -0.598 5.598 17 C -0.277 4.277 18 H 0.084 0.916 19 C 0.040 3.960 20 N -0.876 5.876 21 Si 0.834 3.166 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.258 1.258 25 C 0.132 3.868 26 C 0.078 3.922 27 C -0.140 4.140 28 C -0.079 4.079 29 C -0.123 4.123 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.027 0.973 39 H 0.264 0.736 40 H 0.033 0.967 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.111 0.889 45 H 0.117 0.883 46 H 0.133 0.867 47 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.343 15.474 0.783 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.068 4.068 3 C -0.143 4.143 4 C -0.094 4.094 5 C -0.049 4.049 6 C -0.061 4.061 7 N -0.023 5.023 8 O -0.183 6.183 9 C -0.033 4.033 10 H 0.130 0.870 11 C 0.302 3.698 12 O -0.405 6.405 13 N -0.326 5.326 14 C -0.027 4.027 15 C 0.005 3.995 16 N -0.321 5.321 17 C -0.404 4.404 18 H 0.101 0.899 19 C -0.162 4.162 20 N -0.515 5.515 21 Si 0.660 3.340 22 H -0.219 1.219 23 H -0.220 1.220 24 H -0.183 1.183 25 C 0.005 3.995 26 C -0.046 4.046 27 C -0.180 4.180 28 C -0.099 4.099 29 C -0.141 4.141 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.089 0.911 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.074 0.926 40 H 0.051 0.949 41 H 0.098 0.902 42 H 0.097 0.903 43 H 0.090 0.910 44 H 0.129 0.871 45 H 0.135 0.865 46 H 0.151 0.849 47 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -13.715 16.862 0.395 21.739 hybrid contribution -0.951 -1.206 -0.186 1.547 sum -14.667 15.656 0.208 21.454 Atomic orbital electron populations 1.20866 0.90843 1.03142 1.02689 1.20159 0.96436 0.93137 0.97044 1.21001 0.93702 0.97895 1.01738 1.21332 0.94186 0.97477 0.96425 1.17758 0.86945 0.94465 1.05758 1.24256 0.94225 0.92551 0.95069 1.78430 0.89124 1.21860 1.12910 1.91375 1.14948 1.24483 1.87466 1.23503 0.94745 0.84524 1.00560 0.86951 1.19882 0.84424 0.82097 0.83428 1.90714 1.51500 1.64200 1.34042 1.47948 1.35278 1.09326 1.40021 1.22273 0.88752 0.94991 0.96647 1.21368 0.95940 0.91369 0.90778 1.44287 1.37902 1.08912 1.41021 1.18771 0.95897 0.83980 1.41789 0.89878 1.25215 0.97358 0.96219 0.97361 1.70120 1.34496 1.22164 1.24732 0.87621 0.87562 0.79085 0.79689 1.21891 1.21961 1.18316 1.21791 0.90690 0.91676 0.95357 1.22781 0.95666 0.94765 0.91426 1.23099 0.90330 0.98377 1.06178 1.21304 0.94418 0.97083 0.97128 1.21011 0.93683 0.98011 1.01349 0.90756 0.91163 0.91275 0.85373 0.84905 0.91071 0.89495 0.90432 0.95522 0.92617 0.94936 0.90190 0.90276 0.91025 0.87066 0.86531 0.84926 0.85135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.00 36.01 0.36 -0.25 16 2 C -0.07 -0.50 5.89 -104.53 -0.62 -1.12 16 3 C -0.13 -0.99 9.68 -39.64 -0.38 -1.38 16 4 C -0.07 -0.72 9.69 -39.18 -0.38 -1.10 16 5 C -0.05 -0.51 5.87 -105.04 -0.62 -1.12 16 6 C 0.13 1.59 7.16 -79.39 -0.57 1.02 16 7 N -0.28 -4.21 12.12 35.32 0.43 -3.78 16 8 O -0.16 -2.76 11.82 -30.23 -0.36 -3.11 16 9 C 0.03 0.41 3.20 -26.97 -0.09 0.32 16 10 H 0.11 1.32 7.74 -51.93 -0.40 0.92 16 11 C 0.52 8.68 7.05 -10.99 -0.08 8.60 16 12 O -0.53 -10.76 16.00 -13.31 -0.21 -10.98 16 13 N -0.59 -9.58 2.95 -172.23 -0.51 -10.09 16 14 C 0.10 1.61 6.59 -3.60 -0.02 1.59 16 15 C 0.13 2.44 6.67 -3.60 -0.02 2.42 16 16 N -0.60 -12.88 2.71 -171.78 -0.47 -13.35 16 17 C -0.28 -7.10 9.84 -15.06 -0.15 -7.25 16 18 H 0.08 2.29 8.05 -52.49 -0.42 1.87 16 19 C 0.04 1.07 4.80 -17.43 -0.08 0.98 16 20 N -0.88 -24.79 13.97 55.49 0.78 -24.01 16 21 Si 0.83 19.40 26.46 -169.99 -4.50 14.90 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.26 -5.57 4.99 56.52 0.28 -5.29 16 25 C 0.13 2.46 4.58 -3.37 -0.02 2.45 16 26 C 0.08 1.18 6.21 -3.37 -0.02 1.15 16 27 C -0.14 -1.66 4.85 -26.44 -0.13 -1.79 16 28 C -0.08 -0.73 9.61 -39.17 -0.38 -1.10 16 29 C -0.12 -0.99 9.68 -39.64 -0.38 -1.37 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.07 0.29 8.08 -51.93 -0.42 -0.13 16 33 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 34 H 0.13 1.26 7.84 -52.49 -0.41 0.85 16 35 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.09 1.43 7.00 -51.93 -0.36 1.07 16 37 H 0.08 1.39 7.93 -51.93 -0.41 0.98 16 38 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.03 0.60 6.78 -51.93 -0.35 0.25 16 41 H 0.08 1.61 5.59 -51.93 -0.29 1.31 16 42 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 43 H 0.07 0.84 4.26 -51.93 -0.22 0.62 16 44 H 0.11 1.39 7.90 -51.93 -0.41 0.98 16 45 H 0.12 1.07 6.65 -51.93 -0.35 0.72 16 46 H 0.13 1.06 7.38 -52.49 -0.39 0.68 16 47 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 LS Contribution 376.88 15.07 5.68 5.68 Total: -1.00 -32.72 376.88 -9.38 -42.10 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -6.65 Total: 0.59 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -3.57 Total: 2.05 kcal Atomic # 7 Polarization: -51.47 SS G_CDS: 0.23 Total: -51.24 kcal Atomic # 8 Polarization: -13.52 SS G_CDS: -0.57 Total: -14.09 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.50 Total: 14.90 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.72 -9.38 -42.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900776126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.682 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds