Wall clock time and date at job start Wed Apr 1 2020 01:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38364 * 119.85076 * 2 1 4 4 C 1.37950 * 120.15023 * 179.97438 * 3 2 1 5 5 C 1.39602 * 119.85032 * 0.02562 * 4 3 2 6 6 C 1.47646 * 120.14937 * 179.97438 * 5 4 3 7 7 N 1.29077 * 125.86686 * 359.97438 * 6 5 4 8 8 O 1.41385 * 112.87393 * 180.32883 * 7 6 5 9 9 C 1.44206 * 107.59824 * 342.50038 * 8 7 6 10 10 H 1.09000 * 110.97102 * 267.25664 * 9 8 7 11 11 C 1.50694 * 110.97702 * 143.51945 * 9 8 7 12 12 O 1.21284 * 119.99884 * 359.50074 * 11 9 8 13 13 N 1.34775 * 120.00363 * 179.49688 * 11 9 8 14 14 C 1.46957 * 120.59559 * 179.97438 * 13 11 9 15 15 C 1.53378 * 108.63600 * 235.20737 * 14 13 11 16 16 N 1.46960 * 108.63441 * 310.57541 * 15 14 13 17 17 C 1.36929 * 120.59772 * 235.19929 * 16 15 14 18 18 H 1.08001 * 120.00154 * 26.80307 * 17 16 15 19 19 C 1.38818 * 120.00276 * 206.52209 * 17 16 15 20 20 N 1.31616 * 120.00013 * 217.35632 * 19 17 16 21 21 Si 1.86795 * 119.99797 * 37.35637 * 19 17 16 22 22 H 1.48497 * 109.47307 * 95.28345 * 21 19 17 23 23 H 1.48499 * 109.46918 * 215.28171 * 21 19 17 24 24 H 1.48500 * 109.47058 * 335.28197 * 21 19 17 25 25 C 1.46972 * 118.81093 * 55.48291 * 16 15 14 26 26 C 1.46973 * 120.59035 * 359.97438 * 13 11 9 27 27 C 1.51757 * 125.85390 * 179.97438 * 6 5 4 28 28 C 1.39609 * 119.70609 * 0.25442 * 5 4 3 29 29 C 1.37958 * 119.84657 * 359.48976 * 28 5 4 30 30 H 1.09006 * 109.46507 * 90.00034 * 1 2 3 31 31 H 1.08999 * 109.46940 * 210.00159 * 1 2 3 32 32 H 1.09000 * 109.46934 * 330.00665 * 1 2 3 33 33 H 1.08000 * 119.91972 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.07174 * 179.97438 * 4 3 2 35 35 H 1.09004 * 109.60829 * 115.46529 * 14 13 11 36 36 H 1.08993 * 109.75563 * 355.03988 * 14 13 11 37 37 H 1.09001 * 109.60979 * 190.83526 * 15 14 13 38 38 H 1.08997 * 109.60544 * 70.32236 * 15 14 13 39 39 H 0.97000 * 120.00046 * 180.02562 * 20 19 17 40 40 H 1.09002 * 109.61298 * 64.25873 * 25 16 15 41 41 H 1.08995 * 109.61261 * 184.77395 * 25 16 15 42 42 H 1.08994 * 109.60538 * 244.53503 * 26 13 11 43 43 H 1.09001 * 109.60973 * 5.04778 * 26 13 11 44 44 H 1.09005 * 110.78479 * 77.11941 * 27 6 5 45 45 H 1.08998 * 110.82654 * 313.63366 * 27 6 5 46 46 H 1.07998 * 120.08447 * 179.72276 * 28 5 4 47 47 H 1.08000 * 119.93348 * 180.23033 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.2001 0.0000 4 6 3.5752 1.2073 0.0005 5 6 4.2764 0.0001 0.0005 6 6 5.7528 0.0001 0.0005 7 7 6.5091 1.0461 0.0001 8 8 7.8867 0.7283 -0.0073 9 6 8.0187 -0.6483 0.4014 10 1 8.1761 -0.7224 1.4775 11 6 9.1315 -1.3304 -0.3518 12 8 9.7678 -0.7158 -1.1815 13 7 9.4198 -2.6233 -0.1035 14 6 10.5018 -3.3014 -0.8308 15 6 9.9316 -4.5604 -1.4957 16 7 9.1698 -5.3173 -0.4924 17 6 9.4625 -6.6309 -0.2401 18 1 10.4606 -7.0048 -0.4142 19 6 8.4778 -7.4807 0.2449 20 7 8.7834 -8.4030 1.1328 21 14 6.7192 -7.3153 -0.3625 22 1 6.4883 -8.2701 -1.4762 23 1 5.7813 -7.6153 0.7490 24 1 6.4899 -5.9291 -0.8433 25 6 8.0839 -4.6407 0.2309 26 6 8.6576 -3.3802 0.8996 27 6 6.6417 -1.2299 0.0011 28 6 3.5753 -1.2072 -0.0054 29 6 2.1957 -1.2000 -0.0005 30 1 -0.3632 0.0000 -1.0278 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5137 33 1 1.6520 2.1332 -0.0004 34 1 4.1115 2.1447 0.0001 35 1 11.2916 -3.5816 -0.1337 36 1 10.9064 -2.6362 -1.5936 37 1 10.7476 -5.1752 -1.8755 38 1 9.2731 -4.2746 -2.3159 39 1 8.0955 -8.9971 1.4715 40 1 7.2969 -4.3604 -0.4692 41 1 7.6794 -5.3084 0.9916 42 1 9.3159 -3.6660 1.7200 43 1 7.8414 -2.7656 1.2793 44 1 6.6841 -1.6769 -0.9922 45 1 6.2989 -1.9554 0.7388 46 1 4.1116 -2.1446 -0.0100 47 1 1.6520 -2.1332 -0.0014 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900776126.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:59:24 Heat of formation + Delta-G solvation = 35.683211 kcal Electronic energy + Delta-G solvation = -30045.292513 eV Core-core repulsion = 26002.616031 eV Total energy + Delta-G solvation = -4042.676483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.08379 -40.67344 -39.89319 -38.58610 -35.78306 -35.24332 -33.78175 -32.83822 -32.64159 -32.06837 -31.41362 -29.00153 -27.98979 -26.25848 -24.91371 -24.72877 -23.40096 -23.32361 -22.42236 -21.00875 -20.36444 -19.09477 -18.52324 -17.99161 -17.34951 -17.02657 -16.76807 -16.59717 -16.22097 -16.00953 -15.96998 -15.74477 -15.31776 -15.21151 -14.83083 -14.69761 -14.43881 -14.36013 -14.24809 -14.16746 -14.10053 -13.90493 -13.50764 -13.19167 -13.02065 -12.80970 -12.75491 -12.53633 -12.35363 -12.27087 -12.16765 -12.08617 -11.91188 -11.69742 -11.39327 -11.31443 -10.76054 -10.66567 -9.97526 -9.95908 -9.43344 -8.90542 -8.20943 -5.37816 -0.39183 0.42050 1.10617 1.25403 1.37486 1.39580 1.52906 1.57428 2.10950 2.46965 2.73083 2.78483 2.95191 3.15345 3.24338 3.32367 3.36630 3.70678 3.92108 3.95671 4.00314 4.04535 4.06621 4.22500 4.26856 4.36952 4.39453 4.42796 4.46428 4.51627 4.54491 4.64235 4.74487 4.81854 4.85226 4.86758 4.88497 4.98716 5.10206 5.15688 5.26552 5.36117 5.39763 5.41218 5.62489 5.86427 5.95395 6.09863 6.13447 6.25221 6.89263 6.91438 7.63063 8.04835 8.96991 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010009 B = 0.003533 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.787205 B = 7923.666869 C =10348.446012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.085 4.085 5 C -0.073 4.073 6 C 0.148 3.852 7 N -0.316 5.316 8 O -0.202 6.202 9 C 0.028 3.972 10 H 0.140 0.860 11 C 0.519 3.481 12 O -0.570 6.570 13 N -0.590 5.590 14 C 0.104 3.896 15 C 0.134 3.866 16 N -0.611 5.611 17 C -0.268 4.268 18 H 0.048 0.952 19 C -0.011 4.011 20 N -0.927 5.927 21 Si 0.900 3.100 22 H -0.309 1.309 23 H -0.290 1.290 24 H -0.227 1.227 25 C 0.125 3.875 26 C 0.087 3.913 27 C -0.138 4.138 28 C -0.080 4.080 29 C -0.129 4.129 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.148 0.852 34 H 0.126 0.874 35 H 0.072 0.928 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.032 0.968 39 H 0.263 0.737 40 H 0.047 0.953 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.114 0.886 44 H 0.108 0.892 45 H 0.151 0.849 46 H 0.146 0.854 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.655 16.442 1.106 24.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.064 4.064 3 C -0.148 4.148 4 C -0.105 4.105 5 C -0.074 4.074 6 C -0.041 4.041 7 N -0.058 5.058 8 O -0.219 6.219 9 C -0.033 4.033 10 H 0.157 0.843 11 C 0.306 3.694 12 O -0.449 6.449 13 N -0.323 5.323 14 C -0.020 4.020 15 C 0.008 3.992 16 N -0.335 5.335 17 C -0.397 4.397 18 H 0.065 0.935 19 C -0.209 4.209 20 N -0.569 5.569 21 Si 0.726 3.274 22 H -0.238 1.238 23 H -0.217 1.217 24 H -0.151 1.151 25 C -0.001 4.001 26 C -0.036 4.036 27 C -0.177 4.177 28 C -0.100 4.100 29 C -0.147 4.147 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.166 0.834 34 H 0.144 0.856 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.169 0.831 46 H 0.164 0.836 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -17.028 17.867 0.716 24.692 hybrid contribution 0.034 -1.503 -0.322 1.537 sum -16.994 16.365 0.394 23.596 Atomic orbital electron populations 1.20938 0.88964 1.04174 1.03476 1.20527 0.97869 0.92810 0.95199 1.21257 0.93092 0.99175 1.01235 1.21425 0.95099 0.97137 0.96800 1.17850 0.85926 0.95496 1.08130 1.24601 0.94993 0.92171 0.92299 1.78474 0.88266 1.22791 1.16296 1.91343 1.16663 1.25699 1.88198 1.23623 0.94646 0.83749 1.01326 0.84306 1.20359 0.84482 0.81836 0.82773 1.90694 1.53132 1.65099 1.35962 1.47980 1.35005 1.09359 1.39951 1.22097 0.88980 0.94137 0.96772 1.21405 0.95706 0.91654 0.90455 1.44378 1.38923 1.07809 1.42385 1.18659 0.94526 0.86051 1.40471 0.93457 1.25727 1.01266 0.96397 0.97517 1.70207 1.35890 1.24115 1.26720 0.86575 0.82416 0.80126 0.78247 1.23775 1.21671 1.15056 1.21909 0.90284 0.92633 0.95266 1.22719 0.96680 0.93738 0.90484 1.23176 0.88858 0.98671 1.06988 1.21501 0.95027 0.96934 0.96499 1.21327 0.93449 0.99101 1.00844 0.89939 0.90213 0.90268 0.83443 0.85621 0.91006 0.89345 0.90701 0.95039 0.92754 0.93536 0.91302 0.90415 0.86847 0.87397 0.83113 0.83611 0.83138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.78 10.00 71.24 0.71 -0.07 16 2 C -0.06 -0.75 5.89 -19.80 -0.12 -0.86 16 3 C -0.13 -1.74 9.68 22.23 0.22 -1.52 16 4 C -0.08 -1.51 9.69 22.53 0.22 -1.29 16 5 C -0.07 -1.38 5.87 -20.13 -0.12 -1.50 16 6 C 0.15 3.38 7.16 45.79 0.33 3.71 16 7 N -0.32 -9.17 12.12 -42.18 -0.51 -9.68 16 8 O -0.20 -6.73 11.82 -20.27 -0.24 -6.97 16 9 C 0.03 0.74 3.20 30.44 0.10 0.83 16 10 H 0.14 2.81 7.74 -2.39 -0.02 2.80 16 11 C 0.52 16.61 7.05 87.66 0.62 17.23 16 12 O -0.57 -23.06 16.00 14.99 0.24 -22.82 16 13 N -0.59 -17.88 2.95 -817.20 -2.41 -20.28 16 14 C 0.10 3.36 6.59 86.42 0.57 3.93 16 15 C 0.13 4.82 6.67 86.42 0.58 5.40 16 16 N -0.61 -25.57 2.71 -697.38 -1.89 -27.46 16 17 C -0.27 -13.85 9.84 84.04 0.83 -13.02 16 18 H 0.05 2.72 8.05 -2.91 -0.02 2.69 16 19 C -0.01 -0.58 4.80 84.86 0.41 -0.17 16 20 N -0.93 -53.41 13.97 21.65 0.30 -53.11 16 21 Si 0.90 39.52 26.46 68.60 1.82 41.34 16 22 H -0.31 -14.42 7.11 99.48 0.71 -13.72 16 23 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 24 H -0.23 -8.71 4.99 99.48 0.50 -8.21 16 25 C 0.12 4.30 4.58 86.56 0.40 4.70 16 26 C 0.09 2.35 6.21 86.56 0.54 2.89 16 27 C -0.14 -2.83 4.85 30.78 0.15 -2.68 16 28 C -0.08 -1.20 9.61 22.53 0.22 -0.98 16 29 C -0.13 -1.62 9.68 22.23 0.22 -1.40 16 30 H 0.08 0.46 8.14 -2.38 -0.02 0.44 16 31 H 0.08 0.40 8.08 -2.39 -0.02 0.38 16 32 H 0.08 0.38 8.08 -2.39 -0.02 0.36 16 33 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 34 H 0.13 2.34 7.84 -2.91 -0.02 2.32 16 35 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 36 H 0.09 2.87 7.00 -2.39 -0.02 2.86 16 37 H 0.07 2.70 7.93 -2.39 -0.02 2.68 16 38 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 39 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 40 H 0.05 1.50 6.78 -2.39 -0.02 1.48 16 41 H 0.07 2.56 5.59 -2.39 -0.01 2.55 16 42 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.11 2.11 4.26 -2.39 -0.01 2.10 16 44 H 0.11 2.37 7.90 -2.38 -0.02 2.35 16 45 H 0.15 2.00 6.65 -2.39 -0.02 1.98 16 46 H 0.15 1.72 7.38 -2.91 -0.02 1.70 16 47 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 Total: -1.00 -73.12 376.88 3.94 -69.18 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.78 Total: 14.61 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 5.85 Total: 15.19 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -4.51 Total: -110.53 kcal Atomic # 8 Polarization: -29.79 SS G_CDS: 0.00 Total: -29.79 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 1.82 Total: 41.34 kcal Total: -73.12 3.94 -69.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900776126.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.865 kcal (2) G-P(sol) polarization free energy of solvation -73.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds