Wall clock time and date at job start Wed Apr 1 2020 03:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50696 * 110.53721 * 2 1 4 4 O 1.21284 * 119.99759 * 241.15402 * 3 2 1 5 5 N 1.34776 * 120.00640 * 61.15895 * 3 2 1 6 6 C 1.46496 * 120.00394 * 179.97438 * 5 3 2 7 7 H 1.08993 * 110.73253 * 31.59074 * 6 5 3 8 8 C 1.54345 * 110.81945 * 267.96662 * 6 5 3 9 9 C 1.51375 * 105.17080 * 215.42486 * 8 6 5 10 10 C 1.38489 * 130.39322 * 197.19035 * 9 8 6 11 11 C 1.38100 * 120.22029 * 180.02562 * 10 9 8 12 12 C 1.38260 * 119.92820 * 359.97438 * 11 10 9 13 13 C 1.38094 * 119.93726 * 0.02562 * 12 11 10 14 14 C 1.38218 * 109.75432 * 17.19527 * 9 8 6 15 15 C 1.51370 * 109.76022 * 359.97438 * 14 9 8 16 16 H 1.08997 * 110.29853 * 101.74051 * 15 14 9 17 17 N 1.46507 * 110.38383 * 223.84742 * 15 14 9 18 18 C 1.36940 * 119.99997 * 270.79382 * 17 15 14 19 19 H 1.08004 * 119.99649 * 0.02562 * 18 17 15 20 20 C 1.38804 * 120.00066 * 179.97438 * 18 17 15 21 21 N 1.31612 * 120.00086 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 119.99941 * 0.02562 * 20 18 17 23 23 H 1.48507 * 109.47110 * 89.99703 * 22 20 18 24 24 H 1.48503 * 109.47388 * 209.99410 * 22 20 18 25 25 H 1.48500 * 109.47096 * 329.99850 * 22 20 18 26 26 C 1.54627 * 110.48832 * 237.38348 * 2 1 3 27 27 C 1.54480 * 101.76536 * 216.52516 * 26 2 1 28 28 N 1.46766 * 105.47221 * 25.41761 * 27 26 2 29 29 C 1.34413 * 111.30157 * 342.98130 * 28 27 26 30 30 O 1.21279 * 124.94390 * 180.66992 * 29 28 27 31 31 H 1.08995 * 109.47099 * 298.84344 * 1 2 3 32 32 H 1.09001 * 109.46497 * 58.84530 * 1 2 3 33 33 H 1.08999 * 109.46976 * 178.84341 * 1 2 3 34 34 H 0.97009 * 119.99321 * 359.97438 * 5 3 2 35 35 H 1.08998 * 110.30470 * 334.34961 * 8 6 5 36 36 H 1.09003 * 110.30324 * 96.50198 * 8 6 5 37 37 H 1.08003 * 119.89143 * 0.02562 * 10 9 8 38 38 H 1.07993 * 120.03546 * 179.97438 * 11 10 9 39 39 H 1.07999 * 120.02985 * 179.97438 * 12 11 10 40 40 H 1.07999 * 119.89525 * 180.02562 * 13 12 11 41 41 H 0.96995 * 119.99839 * 90.79579 * 17 15 14 42 42 H 0.97003 * 120.00158 * 180.02562 * 21 20 18 43 43 H 1.09003 * 110.96695 * 334.64542 * 26 2 1 44 44 H 1.08996 * 110.96861 * 98.37314 * 26 2 1 45 45 H 1.09003 * 110.24307 * 144.41135 * 27 26 2 46 46 H 1.08996 * 110.24518 * 266.32960 * 27 26 2 47 47 H 0.96999 * 124.34769 * 162.98345 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 8 2.7460 1.8012 -0.9200 5 7 1.7680 2.2399 1.0223 6 6 2.2824 3.6115 1.0226 7 1 2.3723 3.9900 0.0044 8 6 3.6342 3.6903 1.7632 9 6 3.6248 5.0326 2.4630 10 6 4.6652 5.7711 3.0017 11 6 4.4149 6.9894 3.6019 12 6 3.1217 7.4744 3.6653 13 6 2.0829 6.7394 3.1287 14 6 2.3320 5.5174 2.5265 15 6 1.3843 4.5344 1.8731 16 1 0.8583 3.9550 2.6318 17 7 0.4261 5.2403 1.0187 18 6 -0.7569 5.6894 1.5424 19 1 -0.9833 5.5235 2.5853 20 6 -1.6645 6.3587 0.7330 21 7 -2.8016 6.7898 1.2362 22 14 -1.2725 6.6462 -1.0706 23 1 -1.7761 5.5039 -1.8749 24 1 -1.9273 7.8989 -1.5259 25 1 0.1975 6.7643 -1.2449 26 6 2.0713 -0.7807 -1.2200 27 6 3.3200 -1.4687 -0.6251 28 7 3.0563 -1.5817 0.8143 29 6 2.0595 -0.7638 1.1938 30 8 1.6478 -0.6506 2.3289 31 1 -0.3633 0.4957 0.9001 32 1 -0.3632 0.5317 -0.8795 33 1 -0.3633 -1.0275 -0.0207 34 1 1.2180 1.9279 1.7581 35 1 3.7135 2.8841 2.4925 36 1 4.4587 3.6404 1.0520 37 1 5.6757 5.3931 2.9522 38 1 5.2283 7.5626 4.0214 39 1 2.9240 8.4267 4.1347 40 1 1.0731 7.1191 3.1782 41 1 0.6296 5.3896 0.0822 42 1 -3.4361 7.2572 0.6705 43 1 1.3462 -1.5183 -1.5640 44 1 2.3466 -0.1016 -2.0268 45 1 3.4503 -2.4581 -1.0635 46 1 4.2062 -0.8590 -0.8008 47 1 3.5393 -2.1710 1.4145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000960305386.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:32 Heat of formation + Delta-G solvation = -25.475839 kcal Electronic energy + Delta-G solvation = -30747.580322 eV Core-core repulsion = 26702.251784 eV Total energy + Delta-G solvation = -4045.328538 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.40660 -39.98811 -38.70151 -36.72241 -36.08299 -34.14838 -33.56338 -32.53530 -31.35165 -30.03992 -29.09670 -27.79761 -26.31944 -25.68483 -23.41525 -22.65535 -22.00361 -21.41377 -20.55743 -20.40673 -19.37118 -17.93182 -17.59359 -17.51060 -16.21467 -15.84434 -15.59097 -15.41979 -15.01247 -14.68225 -14.48629 -14.33586 -14.08020 -13.97372 -13.79558 -13.51174 -12.97547 -12.89723 -12.86625 -12.62487 -12.57070 -12.55652 -12.36237 -12.17077 -12.07397 -11.63705 -11.38066 -11.21417 -11.06468 -10.87051 -10.64747 -10.41896 -10.20314 -10.17884 -9.78587 -9.63972 -9.42676 -9.13321 -8.90417 -8.35599 -8.14710 -7.38757 -5.83625 -3.20536 1.75242 1.85347 2.13664 2.54432 2.99611 3.23830 3.35287 3.40000 3.43510 3.93723 4.11525 4.18439 4.42434 4.54312 4.62180 4.74914 4.78361 4.95148 5.03704 5.20155 5.26626 5.30021 5.36027 5.44042 5.49285 5.50238 5.52464 5.61171 5.65664 5.66645 5.76996 5.86913 5.97651 5.99372 6.06936 6.18896 6.25384 6.41567 6.41618 6.57765 6.63832 6.66160 6.84759 6.98410 7.18734 7.45318 7.53404 7.89853 7.91186 8.17943 8.33985 9.10670 9.83549 10.01970 11.33796 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.009209 B = 0.004351 C = 0.003319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3039.893496 B = 6434.337071 C = 8435.075151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.119 4.119 3 C 0.538 3.462 4 O -0.534 6.534 5 N -0.701 5.701 6 C 0.137 3.863 7 H 0.103 0.897 8 C -0.086 4.086 9 C -0.106 4.106 10 C -0.116 4.116 11 C -0.129 4.129 12 C -0.128 4.128 13 C -0.078 4.078 14 C -0.093 4.093 15 C 0.212 3.788 16 H 0.079 0.921 17 N -0.735 5.735 18 C -0.248 4.248 19 H 0.093 0.907 20 C 0.013 3.987 21 N -0.928 5.928 22 Si 0.879 3.121 23 H -0.283 1.283 24 H -0.290 1.290 25 H -0.276 1.276 26 C -0.118 4.118 27 C 0.100 3.900 28 N -0.728 5.728 29 C 0.532 3.468 30 O -0.516 6.516 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.409 0.591 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.132 0.868 41 H 0.364 0.636 42 H 0.260 0.740 43 H 0.090 0.910 44 H 0.111 0.889 45 H 0.083 0.917 46 H 0.077 0.923 47 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.524 -15.240 -1.732 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.126 4.126 3 C 0.322 3.678 4 O -0.411 6.411 5 N -0.350 5.350 6 C 0.031 3.969 7 H 0.121 0.879 8 C -0.124 4.124 9 C -0.107 4.107 10 C -0.134 4.134 11 C -0.148 4.148 12 C -0.146 4.146 13 C -0.096 4.096 14 C -0.097 4.097 15 C 0.101 3.899 16 H 0.096 0.904 17 N -0.377 5.377 18 C -0.377 4.377 19 H 0.110 0.890 20 C -0.184 4.184 21 N -0.575 5.575 22 Si 0.709 3.291 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.156 4.156 27 C -0.025 4.025 28 N -0.384 5.384 29 C 0.316 3.684 30 O -0.391 6.391 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.245 0.755 35 H 0.098 0.902 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.136 0.864 40 H 0.150 0.850 41 H 0.198 0.802 42 H 0.070 0.930 43 H 0.109 0.891 44 H 0.129 0.871 45 H 0.101 0.899 46 H 0.095 0.905 47 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 14.473 -14.759 -1.733 20.743 hybrid contribution 0.222 -0.005 -0.718 0.752 sum 14.695 -14.764 -2.452 20.974 Atomic orbital electron populations 1.21706 0.89133 1.03508 1.04491 1.21637 0.99952 0.94106 0.96889 1.19619 0.80050 0.85903 0.82273 1.90683 1.38494 1.76438 1.35457 1.45884 1.52981 1.12360 1.23816 1.21976 0.92573 0.81112 1.01240 0.87858 1.21327 0.97912 0.94593 0.98616 1.20414 0.94199 0.96114 0.99945 1.20443 0.97759 0.95100 1.00078 1.20896 0.96720 0.96196 1.00943 1.21073 0.92857 0.99852 1.00861 1.20857 0.99970 0.93289 0.95490 1.21527 0.95262 0.96125 0.96787 1.19897 0.88262 0.89823 0.91873 0.90350 1.42762 1.18425 1.68213 1.08260 1.19028 0.91860 1.30097 0.96715 0.88963 1.24617 0.96235 1.00103 0.97420 1.69691 1.09225 1.43326 1.35287 0.86639 0.77769 0.77726 0.86965 1.21005 1.21666 1.20216 1.22720 0.96576 0.99342 0.96982 1.22139 0.98950 1.01619 0.79766 1.46144 1.37214 1.43980 1.11098 1.20353 0.79547 0.79609 0.88874 1.90785 1.61076 1.66103 1.21093 0.90455 0.90486 0.91098 0.75487 0.90159 0.90730 0.87101 0.86684 0.86443 0.84999 0.80227 0.92951 0.89121 0.87110 0.89875 0.90464 0.74878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.42 8.34 37.16 0.31 -1.11 16 2 C -0.12 -1.35 0.74 -155.67 -0.12 -1.46 16 3 C 0.54 7.76 6.55 -10.99 -0.07 7.69 16 4 O -0.53 -8.83 15.10 5.55 0.08 -8.74 16 5 N -0.70 -10.50 5.00 -52.45 -0.26 -10.77 16 6 C 0.14 2.26 3.13 -66.53 -0.21 2.05 16 7 H 0.10 1.89 7.22 -51.93 -0.37 1.51 16 8 C -0.09 -1.28 6.49 -26.85 -0.17 -1.45 16 9 C -0.11 -1.72 6.14 -104.21 -0.64 -2.36 16 10 C -0.12 -1.69 10.04 -39.54 -0.40 -2.09 16 11 C -0.13 -1.85 10.05 -39.62 -0.40 -2.25 16 12 C -0.13 -2.03 10.05 -39.63 -0.40 -2.43 16 13 C -0.08 -1.45 10.00 -39.54 -0.40 -1.85 16 14 C -0.09 -1.73 5.79 -104.20 -0.60 -2.33 16 15 C 0.21 4.03 3.23 -68.05 -0.22 3.81 16 16 H 0.08 1.51 7.75 -51.93 -0.40 1.11 16 17 N -0.74 -16.73 4.95 -53.55 -0.26 -17.00 16 18 C -0.25 -6.61 10.18 -15.06 -0.15 -6.76 16 19 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 20 C 0.01 0.36 5.50 -17.44 -0.10 0.27 16 21 N -0.93 -28.25 13.97 55.49 0.78 -27.47 16 22 Si 0.88 21.87 27.74 -169.99 -4.71 17.15 16 23 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 25 H -0.28 -6.62 6.52 56.52 0.37 -6.25 16 26 C -0.12 -0.99 6.05 -25.10 -0.15 -1.14 16 27 C 0.10 0.68 7.78 -3.12 -0.02 0.66 16 28 N -0.73 -6.20 6.24 -59.20 -0.37 -6.57 16 29 C 0.53 6.31 7.07 -10.86 -0.08 6.24 16 30 O -0.52 -7.75 17.69 5.56 0.10 -7.65 16 31 H 0.08 0.94 7.77 -51.93 -0.40 0.53 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.63 8.12 -51.93 -0.42 0.21 16 34 H 0.41 5.96 7.80 -40.82 -0.32 5.65 16 35 H 0.08 1.13 8.08 -51.93 -0.42 0.71 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.11 1.35 8.06 -52.48 -0.42 0.93 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 40 H 0.13 2.72 7.79 -52.49 -0.41 2.31 16 41 H 0.36 8.44 5.47 -40.82 -0.22 8.22 16 42 H 0.26 7.60 8.31 -40.82 -0.34 7.27 16 43 H 0.09 0.57 7.90 -51.93 -0.41 0.16 16 44 H 0.11 1.04 6.92 -51.93 -0.36 0.68 16 45 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.41 2.74 8.96 -40.82 -0.37 2.37 16 LS Contribution 385.42 15.07 5.81 5.81 Total: -1.00 -33.22 385.42 -9.32 -42.54 By element: Atomic # 1 Polarization: 23.86 SS G_CDS: -6.66 Total: 17.21 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: -3.81 Total: -4.51 kcal Atomic # 7 Polarization: -61.69 SS G_CDS: -0.12 Total: -61.81 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.18 Total: -16.39 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.15 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.22 -9.32 -42.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000960305386.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.066 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds