Wall clock time and date at job start Wed Apr 1 2020 03:23:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.39587 * 123.87844 * 2 1 4 4 C 1.39126 * 130.69433 * 0.67929 * 3 2 1 5 5 C 1.39289 * 120.01676 * 179.59077 * 4 3 2 6 6 C 1.47855 * 119.97419 * 179.73806 * 5 4 3 7 7 O 1.21559 * 120.00024 * 0.02562 * 6 5 4 8 8 N 1.34781 * 120.00312 * 180.02562 * 6 5 4 9 9 C 1.46496 * 119.99827 * 179.97438 * 8 6 5 10 10 C 1.52996 * 110.64667 * 300.70269 * 9 8 6 11 11 C 1.55160 * 110.71720 * 177.55682 * 9 8 6 12 12 C 1.55383 * 101.37102 * 277.04629 * 11 9 8 13 13 N 1.47426 * 104.87493 * 323.01729 * 12 11 9 14 14 C 1.36934 * 125.65302 * 204.09517 * 13 12 11 15 15 H 1.07995 * 120.00325 * 180.02562 * 14 13 12 16 16 C 1.38815 * 119.99788 * 0.03959 * 14 13 12 17 17 N 1.31624 * 119.99903 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00111 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.46758 * 59.99922 * 18 16 14 20 20 H 1.48498 * 109.47010 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46978 * 300.00050 * 18 16 14 22 22 C 1.47028 * 108.70196 * 24.12797 * 13 12 11 23 23 C 1.39616 * 120.05484 * 359.75311 * 5 4 3 24 24 C 1.38087 * 119.68971 * 359.97438 * 23 5 4 25 25 C 1.37849 * 120.10867 * 359.97438 * 24 23 5 26 26 C 1.51191 * 132.65876 * 179.97438 * 25 24 23 27 27 C 1.34359 * 123.87593 * 180.29512 * 2 1 3 28 28 O 1.21290 * 126.42171 * 359.97438 * 27 2 1 29 29 H 1.09002 * 109.47391 * 179.72827 * 1 2 3 30 30 H 1.09001 * 109.46813 * 59.72884 * 1 2 3 31 31 H 1.09004 * 109.47041 * 299.73011 * 1 2 3 32 32 H 1.08004 * 119.98752 * 359.31877 * 4 3 2 33 33 H 0.96995 * 119.99356 * 359.97438 * 8 6 5 34 34 H 1.08998 * 109.46926 * 59.29951 * 10 9 8 35 35 H 1.09002 * 109.47284 * 179.30211 * 10 9 8 36 36 H 1.09005 * 109.47116 * 299.30067 * 10 9 8 37 37 H 1.09000 * 111.00352 * 35.22259 * 11 9 8 38 38 H 1.09000 * 111.00231 * 159.06295 * 11 9 8 39 39 H 1.08995 * 110.34898 * 204.16497 * 12 11 9 40 40 H 1.09005 * 110.35110 * 81.86530 * 12 11 9 41 41 H 0.96999 * 120.00149 * 180.02562 * 17 16 14 42 42 H 1.08995 * 109.88495 * 239.52679 * 22 13 12 43 43 H 1.09000 * 110.01103 * 118.42776 * 22 13 12 44 44 H 1.08006 * 120.15560 * 180.02562 * 23 5 4 45 45 H 1.08000 * 119.94644 * 179.97438 * 24 23 5 46 46 H 1.08998 * 110.50783 * 61.34896 * 26 25 24 47 47 H 1.08996 * 110.50615 * 298.65183 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2431 1.1589 0.0000 4 6 1.8731 2.5000 0.0125 5 6 2.8504 3.4924 0.0181 6 6 2.4560 4.9174 0.0255 7 8 1.2793 5.2224 0.0272 8 7 3.4012 5.8782 0.0304 9 6 3.0104 7.2901 0.0372 10 6 2.1622 7.6210 -1.1924 11 6 4.2614 8.2056 0.1037 12 6 4.5563 8.2110 1.6293 13 7 3.2291 8.2130 2.2713 14 6 2.9529 8.6716 3.5316 15 1 1.9432 8.6290 3.9125 16 6 3.9706 9.1916 4.3195 17 7 5.2012 9.2433 3.8554 18 14 3.5937 9.8179 6.0386 19 1 3.0358 8.7116 6.8571 20 1 4.8423 10.3178 6.6681 21 1 2.6035 10.9216 5.9572 22 6 2.2514 7.6403 1.3344 23 6 4.2020 3.1428 0.0163 24 6 4.5638 1.8102 0.0096 25 6 3.5940 0.8304 0.0051 26 6 3.6636 -0.6799 -0.0028 27 6 2.2139 -1.1155 -0.0057 28 8 1.8050 -2.2574 -0.0112 29 1 -0.3634 -1.0276 -0.0049 30 1 -0.3633 0.5181 -0.8876 31 1 -0.3633 0.5097 0.8924 32 1 0.8277 2.7715 0.0135 33 1 4.3401 5.6348 0.0293 34 1 1.2685 6.9971 -1.1958 35 1 1.8721 8.6713 -1.1618 36 1 2.7419 7.4304 -2.0957 37 1 5.0912 7.7746 -0.4565 38 1 4.0305 9.2092 -0.2535 39 1 5.1122 9.1071 1.9047 40 1 5.1125 7.3168 1.9110 41 1 5.9124 9.6063 4.4060 42 1 1.4705 8.3703 1.1214 43 1 1.8101 6.7392 1.7604 44 1 4.9612 3.9110 0.0210 45 1 5.6081 1.5350 0.0078 46 1 4.1708 -1.0435 0.8908 47 1 4.1695 -1.0341 -0.9010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046456821.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:23:54 Heat of formation + Delta-G solvation = 5.943713 kcal Electronic energy + Delta-G solvation = -29879.826040 eV Core-core repulsion = 25835.859956 eV Total energy + Delta-G solvation = -4043.966084 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.85023 -40.14157 -38.58156 -37.28744 -36.05457 -34.08605 -33.39414 -31.95742 -30.60446 -30.15726 -28.75505 -28.34946 -26.97861 -25.69451 -23.92073 -23.07019 -22.81406 -21.21535 -20.46163 -20.10369 -19.05955 -18.03813 -17.19465 -16.95915 -16.69371 -16.42897 -15.76640 -15.26134 -14.83955 -14.76931 -14.62959 -14.31916 -14.07515 -14.06814 -13.73193 -13.72752 -13.35693 -13.11618 -12.82117 -12.74799 -12.47771 -12.42546 -12.21603 -11.96519 -11.75260 -11.58864 -11.40147 -10.95928 -10.85501 -10.69789 -10.52656 -10.44530 -10.36881 -10.12680 -9.99652 -9.68768 -9.38527 -9.18315 -8.70320 -8.64260 -8.29247 -6.82361 -5.66074 -3.06356 0.54285 0.92882 2.04726 2.34749 2.87122 3.29159 3.41057 3.45010 3.46421 3.71378 3.74666 3.96759 4.43994 4.48951 4.64054 4.73173 4.85689 4.93022 4.94914 5.00575 5.01856 5.14766 5.30468 5.34589 5.37039 5.44877 5.48117 5.54525 5.67749 5.71427 5.95207 6.02082 6.04332 6.13615 6.17147 6.20307 6.29911 6.32543 6.42493 6.49127 6.66770 6.69999 6.81131 7.09545 7.42592 7.51280 7.62070 7.74164 7.82943 8.33898 8.41763 9.22461 9.83061 10.47693 11.38241 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014599 B = 0.002592 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1917.516237 B =10799.336376 C =11348.074097 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.551 5.551 3 C 0.131 3.869 4 C -0.077 4.077 5 C -0.091 4.091 6 C 0.558 3.442 7 O -0.532 6.532 8 N -0.699 5.699 9 C 0.159 3.841 10 C -0.151 4.151 11 C -0.148 4.148 12 C 0.153 3.847 13 N -0.604 5.604 14 C -0.218 4.218 15 H 0.076 0.924 16 C -0.012 4.012 17 N -0.925 5.925 18 Si 0.914 3.086 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.285 1.285 22 C 0.137 3.863 23 C -0.103 4.103 24 C -0.072 4.072 25 C -0.124 4.124 26 C -0.115 4.115 27 C 0.526 3.474 28 O -0.507 6.507 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.140 0.860 33 H 0.397 0.603 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.010 0.990 41 H 0.252 0.748 42 H 0.031 0.969 43 H 0.033 0.967 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.126 0.874 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.439 -15.734 -12.738 20.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.274 5.274 3 C 0.036 3.964 4 C -0.099 4.099 5 C -0.094 4.094 6 C 0.345 3.655 7 O -0.410 6.410 8 N -0.350 5.350 9 C 0.074 3.926 10 C -0.209 4.209 11 C -0.187 4.187 12 C 0.028 3.972 13 N -0.330 5.330 14 C -0.346 4.346 15 H 0.094 0.906 16 C -0.207 4.207 17 N -0.574 5.574 18 Si 0.745 3.255 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.010 3.990 23 C -0.123 4.123 24 C -0.090 4.090 25 C -0.127 4.127 26 C -0.153 4.153 27 C 0.315 3.685 28 O -0.382 6.382 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.158 0.842 33 H 0.233 0.767 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.126 0.874 40 H 0.028 0.972 41 H 0.063 0.937 42 H 0.049 0.951 43 H 0.051 0.949 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.144 0.856 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.548 -16.100 -12.542 20.468 hybrid contribution 0.186 0.190 1.006 1.041 sum -1.362 -15.911 -11.536 19.700 Atomic orbital electron populations 1.21900 0.77191 1.04583 1.03162 1.45708 1.07528 1.05371 1.68793 1.17989 0.90226 0.87339 1.00884 1.20367 1.00797 0.88194 1.00516 1.19755 0.93440 0.93407 1.02840 1.18043 0.85908 0.84776 0.76815 1.90741 1.17571 1.83045 1.49604 1.45903 1.09204 1.06017 1.73864 1.21388 0.96332 0.79057 0.95856 1.22056 1.00730 1.02164 0.95988 1.23452 0.95043 0.98527 1.01629 1.22023 0.88138 1.02287 0.84727 1.44483 1.03526 1.71792 1.13166 1.19045 0.94315 1.32501 0.88778 0.90608 1.24754 0.95409 1.01805 0.98760 1.69758 0.99589 1.51946 1.36132 0.86150 0.76810 0.78684 0.83870 1.21284 1.21590 1.21163 1.21600 0.92295 0.96484 0.88581 1.21291 0.95043 0.96351 0.99572 1.20189 0.98941 0.90996 0.98898 1.19981 0.92696 0.94931 1.05087 1.21104 0.95390 0.92370 1.06486 1.20634 0.88988 0.83918 0.74918 1.90786 1.78955 1.18870 1.49598 0.89089 0.90853 0.90748 0.84229 0.76713 0.90790 0.91684 0.93112 0.91830 0.90414 0.87415 0.97170 0.93750 0.95144 0.94949 0.84583 0.84529 0.85587 0.85665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.59 10.86 59.85 0.65 1.24 16 2 N -0.55 -5.61 3.13 -120.64 -0.38 -5.99 16 3 C 0.13 1.38 6.69 -83.70 -0.56 0.82 16 4 C -0.08 -0.91 9.38 -38.86 -0.36 -1.27 16 5 C -0.09 -1.12 5.86 -105.06 -0.62 -1.74 16 6 C 0.56 8.61 6.99 -12.32 -0.09 8.53 16 7 O -0.53 -9.74 13.27 5.31 0.07 -9.67 16 8 N -0.70 -10.44 5.10 -46.84 -0.24 -10.68 16 9 C 0.16 2.73 0.80 -129.98 -0.10 2.62 16 10 C -0.15 -2.28 8.41 37.16 0.31 -1.97 16 11 C -0.15 -2.55 6.11 -24.32 -0.15 -2.70 16 12 C 0.15 3.51 5.88 -2.27 -0.01 3.50 16 13 N -0.60 -15.33 3.40 -169.77 -0.58 -15.91 16 14 C -0.22 -6.11 10.27 -15.06 -0.15 -6.26 16 15 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 16 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 17 N -0.93 -26.39 10.09 55.49 0.56 -25.83 16 18 Si 0.91 22.08 29.55 -169.99 -5.02 17.06 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 C 0.14 2.99 6.16 -3.06 -0.02 2.97 16 23 C -0.10 -1.00 9.55 -39.12 -0.37 -1.37 16 24 C -0.07 -0.58 10.02 -39.78 -0.40 -0.98 16 25 C -0.12 -1.10 6.35 -104.23 -0.66 -1.76 16 26 C -0.11 -0.84 6.88 -28.46 -0.20 -1.04 16 27 C 0.53 5.58 8.23 -10.84 -0.09 5.49 16 28 O -0.51 -6.86 17.42 5.55 0.10 -6.76 16 29 H 0.09 0.72 7.57 -51.93 -0.39 0.33 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.14 1.67 7.63 -52.48 -0.40 1.27 16 33 H 0.40 4.96 6.50 -40.82 -0.27 4.70 16 34 H 0.07 1.21 6.20 -51.93 -0.32 0.89 16 35 H 0.06 0.95 8.12 -51.93 -0.42 0.53 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.90 8.06 -51.93 -0.42 0.49 16 38 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 39 H 0.11 2.81 5.87 -51.93 -0.31 2.50 16 40 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 41 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 42 H 0.03 0.68 7.80 -51.93 -0.41 0.27 16 43 H 0.03 0.77 6.67 -51.93 -0.35 0.42 16 44 H 0.14 1.09 6.39 -52.48 -0.34 0.75 16 45 H 0.14 0.72 8.06 -52.49 -0.42 0.30 16 46 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -34.15 379.11 -9.23 -43.38 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.54 Total: 3.04 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -2.92 Total: 5.64 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: -0.63 Total: -58.40 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: 0.17 Total: -16.44 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.15 -9.23 -43.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046456821.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.327 kcal (2) G-P(sol) polarization free energy of solvation -34.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds