Wall clock time and date at job start Wed Apr 1 2020 02:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35735 * 120.33560 * 2 1 4 4 C 1.40827 * 119.72384 * 179.97438 * 3 2 1 5 5 C 1.34539 * 120.58169 * 0.25324 * 4 3 2 6 6 N 1.37437 * 120.74039 * 359.48849 * 5 4 3 7 7 C 1.35133 * 131.28441 * 180.19644 * 6 5 4 8 8 C 1.38054 * 108.76794 * 180.28715 * 7 6 5 9 9 C 1.47504 * 126.36954 * 179.97438 * 8 7 6 10 10 O 1.21601 * 119.99896 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99698 * 359.97438 * 9 8 7 12 12 C 1.46507 * 119.99570 * 179.97438 * 11 9 8 13 13 H 1.09000 * 109.45984 * 324.97422 * 12 11 9 14 14 C 1.53038 * 109.45911 * 84.93280 * 12 11 9 15 15 C 1.53196 * 109.31121 * 181.38199 * 14 12 11 16 16 N 1.46919 * 108.77678 * 305.36630 * 15 14 12 17 17 C 1.36936 * 120.63201 * 233.63130 * 16 15 14 18 18 H 1.08001 * 120.00070 * 27.66121 * 17 16 15 19 19 C 1.38817 * 119.99982 * 207.66818 * 17 16 15 20 20 N 1.31618 * 120.00055 * 17.35895 * 19 17 16 21 21 Si 1.86798 * 119.99629 * 197.36125 * 19 17 16 22 22 H 1.48499 * 109.47533 * 90.00111 * 21 19 17 23 23 H 1.48510 * 109.46907 * 209.99720 * 21 19 17 24 24 H 1.48497 * 109.47577 * 329.99665 * 21 19 17 25 25 C 1.46933 * 118.73837 * 53.60759 * 16 15 14 26 26 C 1.53043 * 109.45844 * 205.00153 * 12 11 9 27 27 H 1.08997 * 109.49938 * 58.62740 * 26 12 11 28 28 O 1.42899 * 109.49585 * 298.56591 * 26 12 11 29 29 C 1.41199 * 107.26088 * 0.02562 * 8 7 6 30 30 C 1.37945 * 119.80920 * 0.50916 * 6 5 4 31 31 H 1.09004 * 109.47372 * 90.00400 * 1 2 3 32 32 H 1.09000 * 109.47044 * 210.00197 * 1 2 3 33 33 H 1.08995 * 109.47311 * 330.00125 * 1 2 3 34 34 H 1.08004 * 120.13630 * 359.97438 * 3 2 1 35 35 H 1.08003 * 119.71158 * 179.97438 * 4 3 2 36 36 H 1.07996 * 119.62933 * 179.72626 * 5 4 3 37 37 H 1.08003 * 125.61390 * 0.26483 * 7 6 5 38 38 H 0.97000 * 120.00460 * 0.02562 * 11 9 8 39 39 H 1.09001 * 109.50152 * 301.33731 * 14 12 11 40 40 H 1.09007 * 109.49572 * 61.43155 * 14 12 11 41 41 H 1.09001 * 109.58560 * 185.57675 * 15 14 12 42 42 H 1.09001 * 109.58334 * 65.15752 * 15 14 12 43 43 H 0.96998 * 120.00049 * 180.02562 * 20 19 17 44 44 H 1.09003 * 109.58447 * 186.59944 * 25 16 15 45 45 H 1.08996 * 109.70007 * 66.24735 * 25 16 15 46 46 H 0.96703 * 113.99548 * 179.97438 * 28 26 12 47 47 H 1.07988 * 126.56913 * 179.97438 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1925 1.1715 0.0000 4 6 3.6007 1.1565 0.0005 5 6 4.2728 -0.0090 -0.0040 6 7 3.6005 -1.2077 0.0012 7 6 4.0499 -2.4821 0.0017 8 6 2.9649 -3.3357 0.0015 9 6 3.0119 -4.8100 0.0014 10 8 1.9787 -5.4512 0.0007 11 7 4.2000 -5.4463 0.0010 12 6 4.2467 -6.9106 0.0015 13 1 3.4174 -7.3002 0.5919 14 6 4.1348 -7.4247 -1.4356 15 6 4.1492 -8.9566 -1.4283 16 7 5.3492 -9.4148 -0.7152 17 6 6.2169 -10.2957 -1.3038 18 1 6.3087 -10.3259 -2.3795 19 6 6.9783 -11.1498 -0.5179 20 7 6.6410 -11.3666 0.7357 21 14 8.4817 -11.9914 -1.2397 22 1 9.6768 -11.1353 -1.0299 23 1 8.6864 -13.3002 -0.5683 24 1 8.2772 -12.2080 -2.6944 25 6 5.6010 -8.9096 0.6414 26 6 5.5704 -7.3784 0.6108 27 1 5.6603 -6.9918 1.6260 28 8 6.6572 -6.8953 -0.1814 29 6 1.8019 -2.5351 0.0002 30 6 2.2211 -1.2203 0.0006 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 1.6602 2.1113 -0.0004 35 1 4.1460 2.0887 0.0001 36 1 5.3527 -0.0026 -0.0080 37 1 5.0871 -2.7832 0.0019 38 1 5.0242 -4.9348 0.0011 39 1 3.2027 -7.0718 -1.8768 40 1 4.9773 -7.0558 -2.0206 41 1 4.1695 -9.3268 -2.4533 42 1 3.2586 -9.3279 -0.9211 43 1 7.1733 -11.9632 1.2849 44 1 6.5793 -9.2489 0.9819 45 1 4.8305 -9.2770 1.3192 46 1 7.5290 -7.1542 0.1474 47 1 0.7802 -2.8846 -0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090724153.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:57:09 Heat of formation + Delta-G solvation = -11.778112 kcal Electronic energy + Delta-G solvation = -29615.218730 eV Core-core repulsion = 25570.484169 eV Total energy + Delta-G solvation = -4044.734560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.23032 -40.95022 -39.38238 -37.55566 -36.48355 -35.70954 -35.02715 -33.91770 -31.81045 -30.93300 -30.63099 -29.39367 -27.79817 -27.06028 -24.98683 -23.91842 -23.31248 -22.94183 -22.33392 -21.18511 -20.61139 -19.17627 -18.69369 -17.95353 -17.50220 -17.10631 -16.86424 -16.65049 -16.57684 -16.20428 -15.74305 -15.65034 -15.38798 -15.21132 -15.02790 -14.82693 -14.48027 -14.24531 -14.11981 -13.81134 -13.66596 -13.64296 -13.19087 -13.09030 -12.77800 -12.65212 -12.56807 -12.34919 -12.34432 -12.25830 -12.06233 -12.00150 -11.82140 -11.46384 -11.10167 -11.06553 -10.73293 -10.57643 -10.06961 -9.53870 -8.67928 -8.31169 -7.86722 -5.30808 -0.19713 0.36710 1.07942 1.49227 1.50586 1.59684 1.68815 2.20703 2.47665 2.52639 2.55590 3.25471 3.40618 3.50633 3.64369 3.75849 3.83163 3.91625 4.01464 4.03168 4.10673 4.17844 4.35651 4.38830 4.42599 4.49479 4.61015 4.72816 4.76662 4.79196 4.83546 4.88437 4.95987 4.97562 5.07140 5.14135 5.18666 5.24808 5.35065 5.43289 5.47572 5.51257 5.56986 5.65835 5.66131 5.88753 6.29702 6.37749 6.63686 6.92955 7.15341 7.27488 7.82972 8.36543 9.19819 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.027517 B = 0.002182 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.319997 B =12831.100585 C =13411.632651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.067 4.067 3 C -0.132 4.132 4 C -0.125 4.125 5 C 0.017 3.983 6 N -0.339 5.339 7 C -0.001 4.001 8 C -0.192 4.192 9 C 0.582 3.418 10 O -0.587 6.587 11 N -0.700 5.700 12 C 0.169 3.831 13 H 0.072 0.928 14 C -0.119 4.119 15 C 0.145 3.855 16 N -0.598 5.598 17 C -0.253 4.253 18 H 0.062 0.938 19 C -0.048 4.048 20 N -0.936 5.936 21 Si 0.969 3.031 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.275 1.275 25 C 0.150 3.850 26 C 0.093 3.907 27 H 0.070 0.930 28 O -0.560 6.560 29 C -0.167 4.167 30 C 0.022 3.978 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.094 0.906 34 H 0.161 0.839 35 H 0.183 0.817 36 H 0.194 0.806 37 H 0.206 0.794 38 H 0.413 0.587 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.056 0.944 42 H 0.011 0.989 43 H 0.251 0.749 44 H 0.075 0.925 45 H 0.003 0.997 46 H 0.387 0.613 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.639 30.399 0.652 30.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.068 4.068 3 C -0.152 4.152 4 C -0.145 4.145 5 C -0.100 4.100 6 N -0.001 5.001 7 C -0.135 4.135 8 C -0.200 4.200 9 C 0.371 3.629 10 O -0.469 6.469 11 N -0.351 5.351 12 C 0.064 3.936 13 H 0.090 0.910 14 C -0.159 4.159 15 C 0.019 3.981 16 N -0.321 5.321 17 C -0.383 4.383 18 H 0.080 0.920 19 C -0.243 4.243 20 N -0.582 5.582 21 Si 0.797 3.203 22 H -0.206 1.206 23 H -0.225 1.225 24 H -0.200 1.200 25 C 0.023 3.977 26 C 0.032 3.968 27 H 0.087 0.913 28 O -0.366 6.366 29 C -0.191 4.191 30 C -0.083 4.083 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.112 0.888 34 H 0.179 0.821 35 H 0.200 0.800 36 H 0.211 0.789 37 H 0.222 0.778 38 H 0.250 0.750 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.075 0.925 42 H 0.029 0.971 43 H 0.060 0.940 44 H 0.093 0.907 45 H 0.021 0.979 46 H 0.236 0.764 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -4.556 30.243 0.399 30.586 hybrid contribution 1.281 -1.392 0.183 1.901 sum -3.274 28.850 0.581 29.041 Atomic orbital electron populations 1.20768 0.88556 1.03937 1.03391 1.19686 0.97579 0.89869 0.99698 1.21289 0.94446 0.98250 1.01228 1.21243 0.94705 0.98185 1.00326 1.22390 1.00153 0.82278 1.05149 1.41475 1.07016 1.06106 1.45541 1.22418 0.99937 0.80446 1.10677 1.19529 0.94844 0.91443 1.14174 1.17852 0.83221 0.86809 0.75011 1.90736 1.34825 1.68621 1.52704 1.45779 1.08296 1.06804 1.74191 1.20710 0.96284 0.79522 0.97041 0.91012 1.22071 1.00774 0.96661 0.96413 1.20968 0.88518 0.92465 0.96194 1.44108 1.23092 1.50197 1.14678 1.19431 1.15741 1.11566 0.91556 0.92043 1.25719 1.03316 0.98262 0.97049 1.70170 1.39749 1.39594 1.08716 0.85249 0.80107 0.77151 0.77773 1.20618 1.22494 1.19988 1.21330 1.00600 0.89887 0.85902 1.22477 0.86308 0.94857 0.93186 0.91256 1.86317 1.17130 1.76943 1.56249 1.21080 0.98456 0.90006 1.09583 1.18883 0.82720 0.95081 1.11650 0.90066 0.91932 0.88776 0.82134 0.80020 0.78908 0.77757 0.75012 0.92732 0.91540 0.92520 0.97134 0.94002 0.90699 0.97858 0.76445 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 9.91 71.24 0.71 -0.64 16 2 C -0.07 -1.10 5.90 -19.67 -0.12 -1.22 16 3 C -0.13 -1.43 9.72 22.32 0.22 -1.21 16 4 C -0.13 -1.06 9.97 22.06 0.22 -0.84 16 5 C 0.02 0.19 10.89 82.97 0.90 1.10 16 6 N -0.34 -6.44 2.92 -345.07 -1.01 -7.45 16 7 C 0.00 -0.01 11.09 84.14 0.93 0.92 16 8 C -0.19 -5.41 6.12 -20.15 -0.12 -5.54 16 9 C 0.58 19.79 7.78 86.69 0.67 20.47 16 10 O -0.59 -24.89 16.58 -4.03 -0.07 -24.95 16 11 N -0.70 -21.47 5.04 -445.58 -2.25 -23.72 16 12 C 0.17 6.21 2.20 45.02 0.10 6.31 16 13 H 0.07 2.95 7.58 -2.39 -0.02 2.93 16 14 C -0.12 -4.68 5.51 30.67 0.17 -4.51 16 15 C 0.14 6.55 6.52 86.37 0.56 7.11 16 16 N -0.60 -30.22 2.94 -699.09 -2.05 -32.28 16 17 C -0.25 -13.85 9.58 84.03 0.81 -13.04 16 18 H 0.06 3.36 7.89 -2.91 -0.02 3.33 16 19 C -0.05 -2.65 4.91 84.86 0.42 -2.23 16 20 N -0.94 -54.04 11.19 21.65 0.24 -53.80 16 21 Si 0.97 44.21 29.59 68.60 2.03 46.24 16 22 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 23 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 25 C 0.15 6.97 4.95 86.36 0.43 7.40 16 26 C 0.09 3.34 3.38 30.67 0.10 3.44 16 27 H 0.07 2.18 8.14 -2.39 -0.02 2.17 16 28 O -0.56 -18.62 12.09 -148.98 -1.80 -20.42 16 29 C -0.17 -4.60 10.27 22.94 0.24 -4.37 16 30 C 0.02 0.49 6.60 38.90 0.26 0.75 16 31 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.06 0.91 7.70 -2.39 -0.02 0.89 16 33 H 0.09 0.70 8.08 -2.39 -0.02 0.68 16 34 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 35 H 0.18 0.17 8.06 -2.91 -0.02 0.15 16 36 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 37 H 0.21 2.77 7.42 -2.91 -0.02 2.74 16 38 H 0.41 10.27 7.15 -92.71 -0.66 9.61 16 39 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.07 2.66 7.61 -2.38 -0.02 2.64 16 41 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 42 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 44 H 0.07 3.80 6.03 -2.39 -0.01 3.79 16 45 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 46 H 0.39 10.98 9.08 -74.06 -0.67 10.31 16 47 H 0.14 3.99 7.93 -2.92 -0.02 3.97 16 Total: -1.00 -75.79 384.56 1.26 -74.53 By element: Atomic # 1 Polarization: 28.28 SS G_CDS: -0.33 Total: 27.96 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: 6.49 Total: 13.89 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -5.06 Total: -117.24 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.87 Total: -45.37 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -75.79 1.26 -74.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090724153.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.749 kcal (2) G-P(sol) polarization free energy of solvation -75.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds