Wall clock time and date at job start Wed Apr 1 2020 02:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52991 * 109.50415 * 2 1 4 4 C 1.53120 * 109.50279 * 120.08256 * 2 1 3 5 5 C 1.53118 * 109.16182 * 62.28219 * 4 2 1 6 6 C 1.53031 * 109.27673 * 57.65779 * 5 4 2 7 7 H 1.08995 * 109.46706 * 60.82908 * 6 5 4 8 8 C 1.53002 * 109.45984 * 180.80334 * 6 5 4 9 9 N 1.46502 * 109.47357 * 65.49340 * 8 6 5 10 10 C 1.34776 * 120.00023 * 184.63720 * 9 8 6 11 11 O 1.21284 * 120.00082 * 359.97438 * 10 9 8 12 12 C 1.50696 * 119.99819 * 179.97438 * 10 9 8 13 13 S 1.81005 * 109.47092 * 179.97438 * 12 10 9 14 14 C 1.76205 * 99.99989 * 180.02562 * 13 12 10 15 15 H 1.07999 * 119.99699 * 359.97438 * 14 13 12 16 16 C 1.38803 * 119.99787 * 180.02562 * 14 13 12 17 17 N 1.31628 * 119.99593 * 180.02562 * 16 14 13 18 18 Si 1.86799 * 119.99955 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.46697 * 90.00282 * 18 16 14 20 20 H 1.48500 * 109.46727 * 209.99796 * 18 16 14 21 21 H 1.48493 * 109.47178 * 330.00105 * 18 16 14 22 22 N 1.46845 * 109.52287 * 300.81625 * 6 5 4 23 23 C 1.46900 * 110.99828 * 185.84271 * 22 6 5 24 24 C 1.50700 * 109.47009 * 163.69498 * 23 22 6 25 25 N 1.34786 * 120.00097 * 179.97438 * 24 23 22 26 26 O 1.21278 * 120.00247 * 0.02562 * 24 23 22 27 27 C 1.46843 * 111.20017 * 61.74746 * 22 6 5 28 28 H 1.08999 * 109.46651 * 299.91747 * 1 2 3 29 29 H 1.09000 * 109.47051 * 59.91970 * 1 2 3 30 30 H 1.08996 * 109.47204 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47473 * 180.08131 * 3 2 1 32 32 H 1.09000 * 109.47191 * 300.07970 * 3 2 1 33 33 H 1.09003 * 109.47406 * 60.08025 * 3 2 1 34 34 H 1.09007 * 109.51973 * 302.37773 * 4 2 1 35 35 H 1.09000 * 109.52285 * 182.18953 * 4 2 1 36 36 H 1.08997 * 109.50735 * 297.71029 * 5 4 2 37 37 H 1.09001 * 109.53324 * 177.61639 * 5 4 2 38 38 H 1.09005 * 109.47173 * 185.49742 * 8 6 5 39 39 H 1.09009 * 109.47309 * 305.49336 * 8 6 5 40 40 H 0.96994 * 119.99864 * 4.63595 * 9 8 6 41 41 H 1.08999 * 109.47452 * 299.99834 * 12 10 9 42 42 H 1.09000 * 109.47269 * 59.99961 * 12 10 9 43 43 H 0.97000 * 120.00122 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.47245 * 283.69227 * 23 22 6 45 45 H 1.08999 * 109.47477 * 43.69618 * 23 22 6 46 46 H 0.97003 * 119.99372 * 359.97438 * 25 24 23 47 47 H 0.96991 * 119.99785 * 180.02562 * 25 24 23 48 48 H 1.08997 * 109.46498 * 178.23974 * 27 22 6 49 49 H 1.09000 * 109.45391 * 58.26502 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0409 1.4421 0.0000 4 6 2.0413 -0.7235 1.2489 5 6 1.5750 -2.1814 1.2114 6 6 2.0846 -2.8420 -0.0715 7 1 3.1742 -2.8196 -0.0834 8 6 1.6040 -4.2937 -0.1229 9 7 0.1438 -4.3210 -0.2386 10 6 -0.5128 -5.4975 -0.2067 11 8 0.1051 -6.5337 -0.0827 12 6 -2.0148 -5.5255 -0.3252 13 16 -2.5942 -7.2386 -0.2493 14 6 -4.3303 -6.9818 -0.4077 15 1 -4.7207 -5.9801 -0.5104 16 6 -5.1959 -8.0668 -0.3993 17 7 -6.4927 -7.8749 -0.5181 18 14 -4.5204 -9.7992 -0.2209 19 1 -4.4531 -10.1584 1.2184 20 1 -5.4120 -10.7533 -0.9281 21 1 -3.1593 -9.8630 -0.8112 22 7 1.5675 -2.1139 -1.2371 23 6 1.9222 -2.8005 -2.4864 24 6 1.0641 -2.2762 -3.6089 25 7 1.2146 -2.7636 -4.8565 26 8 0.2387 -1.4151 -3.3898 27 6 2.0410 -0.7239 -1.2479 28 1 -0.3632 0.5126 0.8907 29 1 -0.3633 0.5151 -0.8893 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1309 1.4416 -0.0015 32 1 1.6767 1.9566 -0.8893 33 1 1.6791 1.9558 0.8907 34 1 1.6443 -0.2368 2.1399 35 1 3.1306 -0.6898 1.2692 36 1 0.4857 -2.2158 1.2306 37 1 1.9710 -2.7131 2.0766 38 1 2.0463 -4.7925 -0.9853 39 1 1.9059 -4.8089 0.7891 40 1 -0.3503 -3.4923 -0.3381 41 1 -2.4546 -4.9563 0.4938 42 1 -2.3127 -5.0834 -1.2759 43 1 -7.0978 -8.6331 -0.5119 44 1 2.9720 -2.6179 -2.7160 45 1 1.7563 -3.8717 -2.3722 46 1 1.8756 -3.4516 -5.0318 47 1 0.6626 -2.4259 -5.5789 48 1 1.6670 -0.2197 -2.1389 49 1 3.1309 -0.7117 -1.2542 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098921908.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:52:28 Heat of formation + Delta-G solvation = -79.856418 kcal Electronic energy + Delta-G solvation = -29139.368736 eV Core-core repulsion = 25227.126030 eV Total energy + Delta-G solvation = -3912.242706 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.80190 -39.21941 -38.79161 -35.93467 -34.04462 -33.81733 -32.40312 -32.29433 -29.83348 -28.08181 -27.73279 -27.32936 -25.57594 -24.60081 -23.60174 -21.22645 -20.65770 -20.21578 -18.65714 -17.85364 -17.62165 -17.10888 -16.44490 -16.06108 -15.99015 -15.34605 -15.14032 -14.92851 -14.91247 -14.64867 -14.36888 -14.35000 -13.80324 -13.47986 -13.36779 -13.19275 -13.04938 -12.81723 -12.75186 -12.38324 -12.17838 -12.04773 -11.78929 -11.69074 -11.57562 -11.22861 -11.12701 -10.97953 -10.76064 -10.57583 -10.51825 -10.43770 -10.01118 -9.84578 -9.82339 -9.45745 -8.97207 -8.84484 -8.61382 -8.45122 -6.86753 -6.24780 -3.95881 2.47762 2.82240 3.00792 3.07177 3.34906 3.40397 3.52759 3.65553 3.81405 4.30549 4.36468 4.39533 4.51967 4.60186 4.73340 4.79190 4.84916 4.86080 4.94499 5.05055 5.14108 5.14853 5.23043 5.33042 5.37939 5.41218 5.48992 5.54061 5.57993 5.66428 5.71592 5.78232 5.78514 5.84771 5.86510 6.02242 6.04502 6.11926 6.16284 6.43010 6.52482 6.60162 6.67400 6.78864 7.12686 7.78275 7.98572 8.09996 8.47138 8.59386 9.21408 10.84627 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014367 B = 0.002769 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.506441 B =10111.221866 C =10540.932027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.060 4.060 3 C -0.140 4.140 4 C -0.110 4.110 5 C -0.114 4.114 6 C 0.075 3.925 7 H 0.057 0.943 8 C 0.125 3.875 9 N -0.724 5.724 10 C 0.530 3.470 11 O -0.527 6.527 12 C -0.123 4.123 13 S -0.143 6.143 14 C -0.520 4.520 15 H 0.088 0.912 16 C 0.095 3.905 17 N -0.881 5.881 18 Si 0.857 3.143 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.235 1.235 22 N -0.511 5.511 23 C 0.025 3.975 24 C 0.517 3.483 25 N -0.860 5.860 26 O -0.520 6.520 27 C 0.069 3.931 28 H 0.044 0.956 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.066 0.934 35 H 0.057 0.943 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.076 0.924 40 H 0.408 0.592 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.270 0.730 44 H 0.063 0.937 45 H 0.113 0.887 46 H 0.399 0.601 47 H 0.402 0.598 48 H 0.087 0.913 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.351 17.406 -2.951 29.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.060 4.060 3 C -0.198 4.198 4 C -0.148 4.148 5 C -0.152 4.152 6 C -0.034 4.034 7 H 0.074 0.926 8 C 0.000 4.000 9 N -0.380 5.380 10 C 0.315 3.685 11 O -0.402 6.402 12 C -0.273 4.273 13 S 0.083 5.917 14 C -0.667 4.667 15 H 0.106 0.894 16 C -0.114 4.114 17 N -0.518 5.518 18 Si 0.682 3.318 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.159 1.159 22 N -0.236 5.236 23 C -0.106 4.106 24 C 0.301 3.699 25 N -0.425 5.425 26 O -0.394 6.394 27 C -0.059 4.059 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.076 0.924 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.094 0.906 40 H 0.245 0.755 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.131 0.869 46 H 0.227 0.773 47 H 0.233 0.767 48 H 0.105 0.895 49 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 23.209 16.186 -2.368 28.394 hybrid contribution 0.062 0.546 -0.696 0.887 sum 23.270 16.732 -3.064 28.824 Atomic orbital electron populations 1.21749 0.93227 1.02896 1.00844 1.20554 0.97097 0.94354 0.94029 1.21830 1.00456 0.95510 1.02032 1.21676 1.00093 0.95316 0.97721 1.21676 1.02676 0.95294 0.95511 1.21973 0.97445 0.92714 0.91242 0.92559 1.21386 0.81858 0.94610 1.02155 1.45875 1.06667 1.09385 1.76047 1.20269 0.89512 0.83222 0.75457 1.90687 1.69031 1.32439 1.48044 1.23259 0.93642 1.04677 1.05741 1.84714 1.07142 1.03350 1.96512 1.22337 0.88633 0.97972 1.57774 0.89394 1.24719 0.94119 0.99212 0.93315 1.69944 1.01861 1.31989 1.48018 0.86728 0.81311 0.83995 0.79759 1.19245 1.20028 1.15946 1.61437 1.60223 1.01975 0.99971 1.22102 0.97365 1.01296 0.89863 1.20499 0.83839 0.81883 0.83661 1.43872 1.43361 1.44786 1.10477 1.90753 1.34970 1.30768 1.82882 1.22229 0.96193 0.87936 0.99497 0.93693 0.92642 0.91256 0.93073 0.92527 0.92387 0.91534 0.92386 0.90192 0.91046 0.91957 0.90613 0.75534 0.88600 0.88581 0.91996 0.91874 0.86937 0.77271 0.76705 0.89494 0.95415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.03 37.16 0.30 -0.95 16 2 C -0.06 -0.48 0.77 -154.42 -0.12 -0.60 16 3 C -0.14 -0.98 8.48 37.15 0.32 -0.67 16 4 C -0.11 -0.80 4.79 -26.61 -0.13 -0.93 16 5 C -0.11 -0.91 4.91 -26.65 -0.13 -1.04 16 6 C 0.07 0.59 2.11 -67.73 -0.14 0.45 16 7 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 8 C 0.12 1.28 4.60 -4.04 -0.02 1.26 16 9 N -0.72 -9.33 5.08 -60.29 -0.31 -9.63 16 10 C 0.53 9.41 7.85 -10.99 -0.09 9.33 16 11 O -0.53 -11.16 15.86 5.55 0.09 -11.07 16 12 C -0.12 -2.45 6.16 36.00 0.22 -2.23 16 13 S -0.14 -3.69 18.55 -107.50 -1.99 -5.68 16 14 C -0.52 -15.23 10.04 30.94 0.31 -14.92 16 15 H 0.09 2.70 8.03 -52.49 -0.42 2.28 16 16 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 17 N -0.88 -26.99 13.97 55.49 0.78 -26.21 16 18 Si 0.86 22.02 27.74 -169.99 -4.72 17.30 16 19 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.24 -6.02 6.74 56.52 0.38 -5.64 16 22 N -0.51 -4.41 2.76 -228.13 -0.63 -5.04 16 23 C 0.02 0.20 5.27 -4.98 -0.03 0.17 16 24 C 0.52 5.06 7.79 -10.98 -0.09 4.98 16 25 N -0.86 -5.63 8.87 31.22 0.28 -5.35 16 26 O -0.52 -7.16 15.70 5.56 0.09 -7.07 16 27 C 0.07 0.58 3.83 -3.83 -0.01 0.57 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.75 6.01 -51.93 -0.31 0.44 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 35 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.74 5.74 -51.93 -0.30 0.45 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.63 6.31 -51.93 -0.33 0.30 16 39 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 40 H 0.41 4.97 7.42 -40.82 -0.30 4.67 16 41 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 42 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 43 H 0.27 7.67 8.31 -40.82 -0.34 7.34 16 44 H 0.06 0.36 8.05 -51.93 -0.42 -0.05 16 45 H 0.11 0.92 5.49 -51.93 -0.29 0.63 16 46 H 0.40 1.50 8.83 -40.82 -0.36 1.14 16 47 H 0.40 2.48 8.93 -40.82 -0.36 2.11 16 48 H 0.09 0.89 6.37 -51.93 -0.33 0.56 16 49 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 394.94 15.07 5.95 5.95 Total: -1.00 -35.86 394.94 -8.24 -44.10 By element: Atomic # 1 Polarization: 12.64 SS G_CDS: -8.07 Total: 4.57 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 0.30 Total: -1.86 kcal Atomic # 7 Polarization: -46.35 SS G_CDS: 0.12 Total: -46.23 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: 0.18 Total: -18.14 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.72 Total: 17.30 kcal Atomic # 16 Polarization: -3.69 SS G_CDS: -1.99 Total: -5.68 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.86 -8.24 -44.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098921908.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.761 kcal (2) G-P(sol) polarization free energy of solvation -35.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds