Wall clock time and date at job start Wed Apr 1 2020 02:32:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32681 * 1 3 3 C 1.47659 * 119.99925 * 2 1 4 4 C 1.39717 * 119.99824 * 180.02562 * 3 2 1 5 5 C 1.37598 * 120.00277 * 180.02562 * 4 3 2 6 6 C 1.39737 * 120.00247 * 359.97142 * 5 4 3 7 7 C 1.47686 * 120.01096 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99413 * 359.97438 * 7 6 5 9 9 N 1.34766 * 120.00602 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00325 * 180.02562 * 9 7 6 11 11 H 1.08999 * 112.85227 * 23.79059 * 10 9 7 12 12 C 1.53774 * 113.61701 * 154.99943 * 10 9 7 13 13 C 1.53783 * 87.08516 * 139.97657 * 12 10 9 14 14 H 1.09007 * 113.61302 * 89.19711 * 13 12 10 15 15 N 1.46896 * 113.61859 * 220.01540 * 13 12 10 16 16 C 1.46899 * 111.00338 * 204.99621 * 15 13 12 17 17 C 1.50698 * 109.46987 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31413 * 119.99930 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99918 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47112 * 89.99702 * 24 22 20 26 26 H 1.48498 * 109.47011 * 209.99970 * 24 22 20 27 27 H 1.48494 * 109.47201 * 329.99943 * 24 22 20 28 28 C 1.53786 * 87.07854 * 334.56702 * 13 12 10 29 29 C 1.39749 * 119.99000 * 0.27594 * 6 5 4 30 30 C 1.37598 * 119.99401 * 359.47212 * 29 6 5 31 31 H 1.08004 * 120.00330 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99978 * 359.97438 * 1 2 3 33 33 H 1.07998 * 120.00087 * 180.02562 * 2 1 3 34 34 H 1.08001 * 119.99407 * 359.97015 * 4 3 2 35 35 H 1.08007 * 119.99594 * 179.97438 * 5 4 3 36 36 H 0.97003 * 119.99825 * 359.97438 * 9 7 6 37 37 H 1.08994 * 113.61871 * 25.42934 * 12 10 9 38 38 H 1.09002 * 113.68907 * 254.53805 * 12 10 9 39 39 H 1.00898 * 110.99977 * 328.95863 * 15 13 12 40 40 H 1.09003 * 109.46477 * 60.00383 * 16 15 13 41 41 H 1.08993 * 109.47002 * 300.00709 * 16 15 13 42 42 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 43 43 H 0.96999 * 119.99993 * 179.97438 * 23 22 20 44 44 H 1.09003 * 113.61248 * 139.98267 * 28 13 12 45 45 H 1.09002 * 113.60806 * 270.88225 * 28 13 12 46 46 H 1.07996 * 120.00240 * 179.70220 * 29 6 5 47 47 H 1.08006 * 119.99750 * 180.25385 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2788 0.0000 4 6 3.4623 1.2787 -0.0005 5 6 4.1503 2.4703 0.0000 6 6 3.4518 3.6806 0.0005 7 6 4.1901 4.9596 0.0005 8 8 5.4060 4.9596 0.0005 9 7 3.5163 6.1267 0.0015 10 6 4.2488 7.3955 0.0009 11 1 5.2559 7.3027 -0.4054 12 6 3.4502 8.5676 -0.5934 13 6 4.0391 9.4362 0.5306 14 1 4.9888 9.9033 0.2695 15 7 3.0767 10.3843 1.1074 16 6 3.7655 11.5376 1.7019 17 6 2.7480 12.4863 2.2814 18 8 1.5655 12.2269 2.2069 19 7 3.1522 13.6224 2.8834 20 6 2.2263 14.4883 3.4056 21 1 1.1734 14.2577 3.3386 22 6 2.6427 15.6624 4.0211 23 7 1.7552 16.4925 4.5212 24 14 4.4640 16.0614 4.1363 25 1 4.8779 16.8354 2.9385 26 1 4.7180 16.8665 5.3580 27 1 5.2439 14.7996 4.2041 28 6 4.1911 8.1405 1.3450 29 6 2.0543 3.6805 0.0062 30 6 1.3665 2.4888 0.0005 31 1 -0.5401 -0.9353 -0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8668 -0.9353 -0.0004 34 1 4.0022 0.3434 -0.0005 35 1 5.2304 2.4702 0.0000 36 1 2.5463 6.1267 0.0018 37 1 2.3700 8.4390 -0.5254 38 1 3.7796 8.8611 -1.5902 39 1 2.4038 10.6815 0.4168 40 1 4.3440 12.0507 0.9337 41 1 4.4338 11.1942 2.4914 42 1 4.0979 13.8297 2.9433 43 1 2.0459 17.3120 4.9512 44 1 5.1198 8.0885 1.9133 45 1 3.3134 7.8953 1.9429 46 1 1.5142 4.6157 0.0115 47 1 0.2864 2.4887 0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265559357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:58 Heat of formation + Delta-G solvation = 3.540778 kcal Electronic energy + Delta-G solvation = -27490.024108 eV Core-core repulsion = 23445.953825 eV Total energy + Delta-G solvation = -4044.070283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.71863 -39.55142 -38.57473 -38.03122 -34.79927 -34.63580 -33.92255 -32.76486 -31.65321 -31.37465 -30.01052 -27.11946 -25.87244 -25.17103 -24.00544 -23.16706 -22.66324 -21.04089 -20.23884 -19.93652 -19.35072 -18.40260 -18.12589 -17.09677 -16.51071 -15.89286 -15.63840 -15.46124 -15.36921 -15.15728 -15.09722 -14.73829 -14.56926 -13.98735 -13.88100 -13.72632 -13.49026 -13.25964 -13.15793 -12.75108 -12.68952 -12.57212 -12.23018 -12.14738 -11.87403 -11.80539 -11.38896 -11.36405 -11.14362 -11.05728 -10.86271 -10.70069 -10.59282 -10.17616 -9.97898 -9.57834 -9.49206 -9.28639 -8.72882 -8.58534 -8.21432 -8.15845 -6.31678 -3.83150 0.09333 0.92674 1.76157 2.70374 2.85296 3.02952 3.06551 3.15053 3.52403 3.73677 4.09218 4.12491 4.17526 4.21388 4.31499 4.38648 4.42631 4.49697 4.70088 4.73856 4.79351 4.83748 4.93264 4.98486 5.19313 5.21132 5.30136 5.36268 5.50776 5.51981 5.59844 5.64979 5.70750 5.74762 5.79011 5.85494 5.86536 5.91014 5.95871 6.02433 6.05463 6.22277 6.34243 6.41583 7.12036 7.22796 7.55017 7.58065 7.91877 8.13891 8.59212 8.94333 9.41968 9.82077 10.81430 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022496 B = 0.001528 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.381322 B =18320.547279 C =19076.161673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.126 4.126 3 C -0.035 4.035 4 C -0.119 4.119 5 C -0.057 4.057 6 C -0.136 4.136 7 C 0.558 3.442 8 O -0.539 6.539 9 N -0.711 5.711 10 C 0.122 3.878 11 H 0.116 0.884 12 C -0.148 4.148 13 C 0.062 3.938 14 H 0.076 0.924 15 N -0.654 5.654 16 C 0.047 3.953 17 C 0.450 3.550 18 O -0.566 6.566 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.119 0.881 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.276 1.276 27 H -0.269 1.269 28 C -0.137 4.137 29 C -0.082 4.082 30 C -0.124 4.124 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.138 0.862 36 H 0.401 0.599 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.352 0.648 40 H 0.045 0.955 41 H 0.087 0.913 42 H 0.371 0.629 43 H 0.273 0.727 44 H 0.069 0.931 45 H 0.095 0.905 46 H 0.129 0.871 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.123 -30.682 -12.354 33.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.144 4.144 3 C -0.035 4.035 4 C -0.137 4.137 5 C -0.076 4.076 6 C -0.139 4.139 7 C 0.346 3.654 8 O -0.417 6.417 9 N -0.362 5.362 10 C 0.016 3.984 11 H 0.133 0.867 12 C -0.187 4.187 13 C -0.049 4.049 14 H 0.094 0.906 15 N -0.287 5.287 16 C -0.086 4.086 17 C 0.235 3.765 18 O -0.448 6.448 19 N -0.230 5.230 20 C -0.434 4.434 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.197 1.197 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.177 4.177 29 C -0.100 4.100 30 C -0.141 4.141 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.139 0.861 34 H 0.149 0.851 35 H 0.156 0.844 36 H 0.237 0.763 37 H 0.114 0.886 38 H 0.093 0.907 39 H 0.173 0.827 40 H 0.063 0.937 41 H 0.106 0.894 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.088 0.912 45 H 0.113 0.887 46 H 0.147 0.853 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.079 -30.943 -11.696 33.330 hybrid contribution 1.204 1.043 -0.479 1.663 sum 5.283 -29.899 -12.175 32.713 Atomic orbital electron populations 1.24505 0.95675 1.02617 0.97728 1.21841 0.95308 0.95738 1.01535 1.19347 0.93434 0.93321 0.97405 1.21256 0.93179 0.98259 1.00974 1.21220 1.00907 0.90718 0.94781 1.20036 0.93679 0.93733 1.06455 1.18284 0.87275 0.83822 0.76000 1.90778 1.13430 1.87627 1.49874 1.45895 1.10248 1.05375 1.74686 1.22419 0.97141 0.80697 0.98094 0.86655 1.23628 1.01238 0.95227 0.98617 1.22804 0.95423 0.92346 0.94330 0.90616 1.60188 1.15455 1.15314 1.37707 1.21779 0.96092 0.91503 0.99244 1.19722 0.89609 0.83010 0.84112 1.90560 1.17612 1.75263 1.61349 1.42214 1.08181 1.19775 1.52819 1.19436 0.91935 0.98850 1.33224 0.86296 1.25037 0.98121 0.95922 0.97034 1.69622 1.33409 1.11458 1.37635 0.86670 0.84883 0.78960 0.78880 1.19660 1.20152 1.19456 1.23590 1.03128 0.94445 0.96503 1.21247 0.92957 0.98571 0.97251 1.21244 1.00272 0.91454 1.01162 0.87478 0.87804 0.86105 0.85082 0.84439 0.76280 0.88632 0.90665 0.82737 0.93654 0.89447 0.79672 0.91612 0.91242 0.88652 0.85325 0.85022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.72 14.15 28.84 0.41 -0.31 16 2 C -0.13 -0.66 9.90 -37.63 -0.37 -1.03 16 3 C -0.03 -0.24 5.87 -104.95 -0.62 -0.85 16 4 C -0.12 -0.83 9.76 -39.26 -0.38 -1.21 16 5 C -0.06 -0.50 9.57 -39.26 -0.38 -0.87 16 6 C -0.14 -1.25 5.88 -104.91 -0.62 -1.86 16 7 C 0.56 6.15 7.77 -12.41 -0.10 6.05 16 8 O -0.54 -7.77 15.93 5.29 0.08 -7.68 16 9 N -0.71 -6.39 5.30 -54.01 -0.29 -6.68 16 10 C 0.12 1.17 4.24 -67.12 -0.28 0.88 16 11 H 0.12 1.21 7.46 -51.93 -0.39 0.83 16 12 C -0.15 -1.31 7.40 -25.92 -0.19 -1.50 16 13 C 0.06 0.68 4.14 -66.90 -0.28 0.41 16 14 H 0.08 0.78 7.87 -51.92 -0.41 0.37 16 15 N -0.65 -9.60 6.18 -107.13 -0.66 -10.26 16 16 C 0.05 0.76 6.01 -4.98 -0.03 0.73 16 17 C 0.45 10.13 7.82 -10.99 -0.09 10.04 16 18 O -0.57 -15.05 15.78 5.55 0.09 -14.97 16 19 N -0.59 -14.04 5.09 -10.96 -0.06 -14.09 16 20 C -0.31 -8.66 10.16 -14.93 -0.15 -8.81 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.74 13.96 55.50 0.77 -24.96 16 24 Si 0.88 19.37 27.74 -169.99 -4.71 14.65 16 25 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 26 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 27 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 28 C -0.14 -1.50 7.68 -25.91 -0.20 -1.70 16 29 C -0.08 -0.58 9.52 -39.25 -0.37 -0.95 16 30 C -0.12 -0.81 9.38 -39.26 -0.37 -1.18 16 31 H 0.11 0.31 8.06 -52.48 -0.42 -0.12 16 32 H 0.10 0.38 6.02 -52.48 -0.32 0.07 16 33 H 0.12 0.46 8.06 -52.49 -0.42 0.03 16 34 H 0.13 0.63 8.06 -52.49 -0.42 0.20 16 35 H 0.14 1.19 7.64 -52.48 -0.40 0.79 16 36 H 0.40 2.69 6.74 -40.82 -0.28 2.42 16 37 H 0.10 0.82 8.12 -51.93 -0.42 0.39 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.35 5.29 8.24 -39.29 -0.32 4.96 16 40 H 0.05 0.64 8.13 -51.93 -0.42 0.21 16 41 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 42 H 0.37 7.73 5.76 -40.82 -0.24 7.50 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.13 0.63 6.38 -52.49 -0.34 0.30 16 47 H 0.13 0.61 6.15 -52.48 -0.32 0.28 16 LS Contribution 396.43 15.07 5.97 5.97 Total: -1.00 -35.18 396.43 -9.27 -44.46 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: -6.36 Total: 14.67 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -4.11 Total: -1.12 kcal Atomic # 7 Polarization: -55.76 SS G_CDS: -0.23 Total: -55.99 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: 0.17 Total: -22.65 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.18 -9.27 -44.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265559357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.998 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds