Wall clock time and date at job start Wed Apr 1 2020 02:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32681 * 1 3 3 C 1.47659 * 119.99925 * 2 1 4 4 C 1.39717 * 119.99824 * 180.02562 * 3 2 1 5 5 C 1.37598 * 120.00277 * 180.02562 * 4 3 2 6 6 C 1.39737 * 120.00247 * 359.97142 * 5 4 3 7 7 C 1.47686 * 120.01096 * 180.02562 * 6 5 4 8 8 O 1.21585 * 119.99413 * 359.97438 * 7 6 5 9 9 N 1.34766 * 120.00602 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00325 * 180.02562 * 9 7 6 11 11 H 1.08999 * 112.85227 * 23.79059 * 10 9 7 12 12 C 1.53774 * 113.61701 * 154.99943 * 10 9 7 13 13 C 1.53783 * 87.08516 * 139.97657 * 12 10 9 14 14 H 1.09007 * 113.61302 * 89.19711 * 13 12 10 15 15 N 1.46896 * 113.61859 * 220.01540 * 13 12 10 16 16 C 1.46899 * 111.00338 * 204.99621 * 15 13 12 17 17 C 1.50698 * 109.46987 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31413 * 119.99930 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99918 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47112 * 89.99702 * 24 22 20 26 26 H 1.48498 * 109.47011 * 209.99970 * 24 22 20 27 27 H 1.48494 * 109.47201 * 329.99943 * 24 22 20 28 28 C 1.53786 * 87.07854 * 334.56702 * 13 12 10 29 29 C 1.39749 * 119.99000 * 0.27594 * 6 5 4 30 30 C 1.37598 * 119.99401 * 359.47212 * 29 6 5 31 31 H 1.08004 * 120.00330 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.99978 * 359.97438 * 1 2 3 33 33 H 1.07998 * 120.00087 * 180.02562 * 2 1 3 34 34 H 1.08001 * 119.99407 * 359.97015 * 4 3 2 35 35 H 1.08007 * 119.99594 * 179.97438 * 5 4 3 36 36 H 0.97003 * 119.99825 * 359.97438 * 9 7 6 37 37 H 1.08994 * 113.61871 * 25.42934 * 12 10 9 38 38 H 1.09002 * 113.68907 * 254.53805 * 12 10 9 39 39 H 1.00898 * 110.99977 * 328.95863 * 15 13 12 40 40 H 1.09003 * 109.46477 * 60.00383 * 16 15 13 41 41 H 1.08993 * 109.47002 * 300.00709 * 16 15 13 42 42 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 43 43 H 0.96999 * 119.99993 * 179.97438 * 23 22 20 44 44 H 1.09003 * 113.61248 * 139.98267 * 28 13 12 45 45 H 1.09002 * 113.60806 * 270.88225 * 28 13 12 46 46 H 1.07996 * 120.00240 * 179.70220 * 29 6 5 47 47 H 1.08006 * 119.99750 * 180.25385 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0651 1.2788 0.0000 4 6 3.4623 1.2787 -0.0005 5 6 4.1503 2.4703 0.0000 6 6 3.4518 3.6806 0.0005 7 6 4.1901 4.9596 0.0005 8 8 5.4060 4.9596 0.0005 9 7 3.5163 6.1267 0.0015 10 6 4.2488 7.3955 0.0009 11 1 5.2559 7.3027 -0.4054 12 6 3.4502 8.5676 -0.5934 13 6 4.0391 9.4362 0.5306 14 1 4.9888 9.9033 0.2695 15 7 3.0767 10.3843 1.1074 16 6 3.7655 11.5376 1.7019 17 6 2.7480 12.4863 2.2814 18 8 1.5655 12.2269 2.2069 19 7 3.1522 13.6224 2.8834 20 6 2.2263 14.4883 3.4056 21 1 1.1734 14.2577 3.3386 22 6 2.6427 15.6624 4.0211 23 7 1.7552 16.4925 4.5212 24 14 4.4640 16.0614 4.1363 25 1 4.8779 16.8354 2.9385 26 1 4.7180 16.8665 5.3580 27 1 5.2439 14.7996 4.2041 28 6 4.1911 8.1405 1.3450 29 6 2.0543 3.6805 0.0062 30 6 1.3665 2.4888 0.0005 31 1 -0.5401 -0.9353 -0.0004 32 1 -0.5400 0.9353 0.0004 33 1 1.8668 -0.9353 -0.0004 34 1 4.0022 0.3434 -0.0005 35 1 5.2304 2.4702 0.0000 36 1 2.5463 6.1267 0.0018 37 1 2.3700 8.4390 -0.5254 38 1 3.7796 8.8611 -1.5902 39 1 2.4038 10.6815 0.4168 40 1 4.3440 12.0507 0.9337 41 1 4.4338 11.1942 2.4914 42 1 4.0979 13.8297 2.9433 43 1 2.0459 17.3120 4.9512 44 1 5.1198 8.0885 1.9133 45 1 3.3134 7.8953 1.9429 46 1 1.5142 4.6157 0.0115 47 1 0.2864 2.4887 0.0008 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265559357.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:32:57 Heat of formation + Delta-G solvation = -22.507784 kcal Electronic energy + Delta-G solvation = -27491.153659 eV Core-core repulsion = 23445.953825 eV Total energy + Delta-G solvation = -4045.199834 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.47815 -40.46613 -39.96078 -39.04896 -36.17372 -35.55514 -35.13304 -33.84966 -33.61701 -31.95245 -30.54603 -28.61152 -26.68877 -26.22507 -25.33142 -23.71123 -23.53316 -21.77085 -21.33717 -20.91982 -20.53075 -20.19559 -18.88855 -18.02187 -17.51640 -17.01369 -16.91201 -16.53909 -16.33944 -16.06325 -15.96875 -15.81622 -15.46852 -15.27670 -14.94946 -14.71241 -14.45555 -14.20542 -14.16138 -14.06905 -13.85232 -13.37846 -13.29502 -13.21011 -13.13527 -12.91104 -12.41707 -12.28459 -12.21404 -12.02636 -11.93518 -11.80588 -11.54295 -11.50673 -11.33773 -11.03737 -10.42032 -10.24677 -10.09425 -10.03295 -9.32120 -9.21033 -8.41338 -6.02164 -0.46256 0.39004 1.26725 1.30926 1.35438 1.44654 1.96033 2.04164 2.10516 2.23029 2.77464 2.94311 3.15457 3.42929 3.52444 3.63097 3.65604 3.76687 3.88081 3.94100 3.94593 4.04397 4.16945 4.32186 4.33446 4.42822 4.45531 4.53775 4.58642 4.74641 4.81021 4.85045 4.92759 5.00955 5.01693 5.07937 5.14969 5.23551 5.30857 5.35450 5.51534 5.56434 5.65092 5.80280 5.90368 5.92434 6.11194 6.42393 6.49295 6.60034 6.88127 7.14236 7.40059 7.96363 8.76255 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.022496 B = 0.001528 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.381322 B =18320.547279 C =19076.161673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.145 4.145 3 C -0.035 4.035 4 C -0.124 4.124 5 C -0.071 4.071 6 C -0.159 4.159 7 C 0.556 3.444 8 O -0.582 6.582 9 N -0.701 5.701 10 C 0.126 3.874 11 H 0.108 0.892 12 C -0.133 4.133 13 C 0.062 3.938 14 H 0.093 0.907 15 N -0.670 5.670 16 C 0.061 3.939 17 C 0.449 3.551 18 O -0.614 6.614 19 N -0.592 5.592 20 C -0.330 4.330 21 H 0.056 0.944 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.256 1.256 26 H -0.276 1.276 27 H -0.233 1.233 28 C -0.139 4.139 29 C -0.079 4.079 30 C -0.131 4.131 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.133 0.867 34 H 0.150 0.850 35 H 0.128 0.872 36 H 0.413 0.587 37 H 0.099 0.901 38 H 0.092 0.908 39 H 0.349 0.651 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.390 0.610 43 H 0.279 0.721 44 H 0.065 0.935 45 H 0.083 0.917 46 H 0.149 0.851 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.789 -32.087 -13.365 35.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.163 4.163 3 C -0.036 4.036 4 C -0.142 4.142 5 C -0.090 4.090 6 C -0.162 4.162 7 C 0.345 3.655 8 O -0.463 6.463 9 N -0.352 5.352 10 C 0.020 3.980 11 H 0.126 0.874 12 C -0.172 4.172 13 C -0.048 4.048 14 H 0.111 0.889 15 N -0.303 5.303 16 C -0.072 4.072 17 C 0.237 3.763 18 O -0.498 6.498 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.074 0.926 22 C -0.212 4.212 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.180 1.180 26 H -0.201 1.201 27 H -0.156 1.156 28 C -0.178 4.178 29 C -0.097 4.097 30 C -0.149 4.149 31 H 0.141 0.859 32 H 0.127 0.873 33 H 0.151 0.849 34 H 0.167 0.833 35 H 0.146 0.854 36 H 0.251 0.749 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.169 0.831 40 H 0.098 0.902 41 H 0.126 0.874 42 H 0.225 0.775 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.166 0.834 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 5.730 -32.371 -12.724 35.251 hybrid contribution 0.472 1.350 -0.172 1.440 sum 6.202 -31.021 -12.896 34.163 Atomic orbital electron populations 1.24765 0.95435 1.03706 0.95474 1.21957 0.95799 0.95473 1.03077 1.19660 0.93501 0.94327 0.96093 1.21464 0.93633 0.98369 1.00747 1.21280 1.00685 0.91470 0.95605 1.20006 0.94589 0.92908 1.08711 1.18615 0.86894 0.84785 0.75167 1.90745 1.15196 1.88232 1.52144 1.45817 1.10833 1.04789 1.73736 1.22303 0.97195 0.81088 0.97398 0.87358 1.23544 1.01287 0.93621 0.98724 1.22902 0.95511 0.91439 0.94958 0.88916 1.60159 1.16535 1.15143 1.38484 1.21700 0.94177 0.90752 1.00554 1.21003 0.90299 0.82881 0.82158 1.90538 1.20460 1.76249 1.62580 1.42050 1.08302 1.19726 1.53247 1.19022 0.90398 1.00950 1.35537 0.92618 1.26098 1.04826 0.94795 0.95524 1.69803 1.36840 1.12251 1.38568 0.85373 0.76795 0.80210 0.79202 1.18049 1.20088 1.15593 1.23567 1.02362 0.95004 0.96916 1.21457 0.92110 0.99839 0.96321 1.21550 1.01419 0.91134 1.00759 0.85905 0.87274 0.84916 0.83267 0.85441 0.74908 0.88218 0.88978 0.83135 0.90204 0.87400 0.77492 0.91155 0.91631 0.89888 0.83370 0.82910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 14.15 66.65 0.94 0.02 16 2 C -0.15 -1.22 9.90 23.59 0.23 -0.99 16 3 C -0.04 -0.44 5.87 -20.07 -0.12 -0.55 16 4 C -0.12 -1.68 9.76 22.48 0.22 -1.46 16 5 C -0.07 -1.27 9.57 22.48 0.22 -1.06 16 6 C -0.16 -2.92 5.88 -20.05 -0.12 -3.03 16 7 C 0.56 12.35 7.77 86.74 0.67 13.02 16 8 O -0.58 -17.29 15.93 -3.98 -0.06 -17.36 16 9 N -0.70 -12.02 5.30 -443.06 -2.35 -14.37 16 10 C 0.13 2.25 4.24 45.52 0.19 2.44 16 11 H 0.11 2.17 7.46 -2.39 -0.02 2.15 16 12 C -0.13 -2.03 7.40 31.12 0.23 -1.80 16 13 C 0.06 1.21 4.14 45.44 0.19 1.40 16 14 H 0.09 1.55 7.87 -2.38 -0.02 1.53 16 15 N -0.67 -18.39 6.18 -492.85 -3.05 -21.44 16 16 C 0.06 1.80 6.01 85.56 0.51 2.31 16 17 C 0.45 20.01 7.82 87.66 0.69 20.70 16 18 O -0.61 -33.60 15.78 -3.07 -0.05 -33.65 16 19 N -0.59 -27.79 5.09 -306.98 -1.56 -29.35 16 20 C -0.33 -19.33 10.16 84.04 0.85 -18.47 16 21 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 22 C -0.01 -0.76 5.50 84.93 0.47 -0.30 16 23 N -0.93 -56.30 13.96 21.66 0.30 -56.00 16 24 Si 0.96 38.76 27.74 68.60 1.90 40.66 16 25 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 26 H -0.28 -11.05 7.11 99.48 0.71 -10.34 16 27 H -0.23 -7.92 6.52 99.48 0.65 -7.27 16 28 C -0.14 -2.85 7.68 31.12 0.24 -2.61 16 29 C -0.08 -1.03 9.52 22.48 0.21 -0.82 16 30 C -0.13 -1.50 9.38 22.48 0.21 -1.29 16 31 H 0.12 0.34 8.06 -2.91 -0.02 0.32 16 32 H 0.11 0.50 6.02 -2.91 -0.02 0.48 16 33 H 0.13 0.74 8.06 -2.91 -0.02 0.72 16 34 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.13 2.41 7.64 -2.91 -0.02 2.39 16 36 H 0.41 4.99 6.74 -92.71 -0.62 4.36 16 37 H 0.10 1.48 8.12 -2.39 -0.02 1.46 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.35 9.98 8.24 -89.70 -0.74 9.24 16 40 H 0.08 1.89 8.13 -2.39 -0.02 1.87 16 41 H 0.11 2.83 8.14 -2.39 -0.02 2.82 16 42 H 0.39 15.14 5.76 -92.71 -0.53 14.61 16 43 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 44 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.15 1.19 6.38 -2.91 -0.02 1.18 16 47 H 0.15 1.02 6.15 -2.91 -0.02 1.00 16 Total: -1.00 -82.38 396.43 0.05 -82.33 By element: Atomic # 1 Polarization: 42.59 SS G_CDS: -0.93 Total: 41.66 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: 5.85 Total: 7.51 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -6.66 Total: -121.15 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.11 Total: -51.01 kcal Atomic # 14 Polarization: 38.76 SS G_CDS: 1.90 Total: 40.66 kcal Total: -82.38 0.05 -82.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265559357.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.818 kcal (2) G-P(sol) polarization free energy of solvation -82.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds