Wall clock time and date at job start Wed Apr 1 2020 01:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46814 * 2 1 4 4 N 1.46494 * 109.47268 * 119.99928 * 2 1 3 5 5 C 1.46500 * 120.00189 * 300.00151 * 4 2 1 6 6 C 1.50696 * 109.47436 * 269.99773 * 5 4 2 7 7 H 1.08001 * 119.99706 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00266 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99583 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00038 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46891 * 90.00155 * 10 8 6 12 12 H 1.48497 * 109.46835 * 209.99678 * 10 8 6 13 13 H 1.48498 * 109.47021 * 329.99867 * 10 8 6 14 14 C 1.34780 * 119.99858 * 120.00191 * 4 2 1 15 15 O 1.21279 * 120.00147 * 180.02562 * 14 4 2 16 16 C 1.50704 * 119.99743 * 0.02562 * 14 4 2 17 17 N 1.46503 * 109.46760 * 180.02562 * 16 14 4 18 18 C 1.34773 * 119.99832 * 180.02562 * 17 16 14 19 19 O 1.21650 * 120.00336 * 359.97438 * 18 17 16 20 20 C 1.47058 * 120.00161 * 179.97438 * 18 17 16 21 21 C 1.35868 * 125.43088 * 180.02562 * 20 18 17 22 22 C 1.41590 * 107.72568 * 179.97438 * 21 20 18 23 23 C 1.40105 * 133.37815 * 179.97438 * 22 21 20 24 24 C 1.36434 * 119.83013 * 180.02562 * 23 22 21 25 25 C 1.38938 * 120.61619 * 359.97352 * 24 23 22 26 26 C 1.37667 * 120.65240 * 0.04007 * 25 24 23 27 27 C 1.39235 * 119.80608 * 359.97085 * 26 25 24 28 28 N 1.37478 * 133.17921 * 179.97438 * 27 26 25 29 29 H 0.96998 * 125.60983 * 0.03169 * 28 27 26 30 30 H 1.09001 * 109.47217 * 299.99775 * 1 2 3 31 31 H 1.08995 * 109.47043 * 59.99971 * 1 2 3 32 32 H 1.09001 * 109.46651 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46952 * 240.00707 * 2 1 3 34 34 H 1.08999 * 109.46708 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.46886 * 300.00130 * 3 2 1 36 36 H 1.09000 * 109.46784 * 60.00604 * 3 2 1 37 37 H 1.08997 * 109.47097 * 30.00481 * 5 4 2 38 38 H 1.09006 * 109.46733 * 150.00001 * 5 4 2 39 39 H 0.97003 * 119.99560 * 180.02562 * 9 8 6 40 40 H 1.08996 * 109.47116 * 59.99888 * 16 14 4 41 41 H 1.09004 * 109.46832 * 299.99667 * 16 14 4 42 42 H 0.96999 * 120.00560 * 359.97438 * 17 16 14 43 43 H 1.07999 * 126.13952 * 359.95209 * 21 20 18 44 44 H 1.07997 * 120.08011 * 0.06538 * 23 22 21 45 45 H 1.08005 * 119.69346 * 179.97438 * 24 23 22 46 46 H 1.08005 * 119.67604 * 180.02562 * 25 24 23 47 47 H 1.08004 * 120.09847 * 180.25294 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.6645 -0.1901 2.5267 6 6 2.7032 0.8018 2.9830 7 1 3.5428 1.0363 2.3454 8 6 2.5817 1.4100 4.2145 9 7 1.5596 1.1240 4.9910 10 14 3.8689 2.6400 4.7797 11 1 3.4749 4.0040 4.3444 12 1 3.9716 2.6035 6.2607 13 1 5.1832 2.2903 4.1835 14 6 2.7933 -1.7864 1.0724 15 8 3.1972 -2.3584 2.0626 16 6 3.1578 -2.3008 -0.2964 17 7 3.9995 -3.4923 -0.1620 18 6 4.4495 -4.1271 -1.2624 19 8 4.1563 -3.7110 -2.3673 20 6 5.2949 -5.3228 -1.1276 21 6 5.8074 -6.0454 -2.1578 22 6 6.5600 -7.1098 -1.6053 23 6 7.3014 -8.1573 -2.1675 24 6 7.9339 -9.0531 -1.3557 25 6 7.8508 -8.9370 0.0263 26 6 7.1283 -7.9167 0.6028 27 6 6.4738 -6.9902 -0.2045 28 7 5.6949 -5.8903 0.0668 29 1 5.4643 -5.5659 0.9513 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 0.6905 0.2973 2.4844 38 1 1.6239 -1.0227 3.2291 39 1 1.4739 1.5521 5.8573 40 1 3.7030 -1.5299 -0.8410 41 1 2.2496 -2.5576 -0.8417 42 1 4.2336 -3.8240 0.7190 43 1 5.6658 -5.8441 -3.2094 44 1 7.3726 -8.2550 -3.2407 45 1 8.5045 -9.8600 -1.7914 46 1 8.3579 -9.6543 0.6546 47 1 7.0731 -7.8325 1.6781 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079867006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:55:08 Heat of formation + Delta-G solvation = -14.371913 kcal Electronic energy + Delta-G solvation = -29047.583593 eV Core-core repulsion = 25002.736557 eV Total energy + Delta-G solvation = -4044.847036 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.79539 -39.93725 -38.93937 -36.98633 -36.26318 -34.54658 -32.90837 -32.39042 -31.01514 -30.16047 -29.34633 -28.60524 -26.87737 -26.51826 -24.00741 -22.72809 -22.37346 -21.50302 -21.29520 -20.31414 -19.08640 -18.10264 -17.47930 -16.59417 -16.43709 -16.36014 -15.83325 -15.69110 -15.24114 -14.92623 -14.73523 -14.34074 -14.16436 -14.09739 -13.89976 -13.61944 -13.49284 -13.14974 -13.05524 -12.99976 -12.44156 -12.12875 -11.99595 -11.84090 -11.76809 -11.64445 -11.29427 -11.18556 -11.02689 -10.93483 -10.66430 -10.47240 -10.37946 -10.14680 -10.12121 -9.65473 -9.32269 -9.21369 -8.50291 -8.50059 -8.03412 -7.84591 -6.11816 -4.15515 0.53093 1.36781 1.89530 2.65383 2.85976 3.09024 3.19442 3.24447 3.31896 3.35838 3.65433 3.75942 4.37664 4.41496 4.54134 4.75596 4.76337 4.85429 5.06043 5.14185 5.16029 5.22929 5.26121 5.35968 5.40542 5.48625 5.49912 5.57275 5.70068 5.77526 5.93825 6.03039 6.10428 6.17292 6.21506 6.27524 6.30218 6.35777 6.42838 6.51881 6.80832 6.88227 6.95799 7.09929 7.31467 7.34718 7.41092 7.83815 7.92858 8.14662 8.23008 8.70834 8.90377 9.48752 10.96385 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014388 B = 0.002339 C = 0.002113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1945.650349 B =11970.507299 C =13249.236972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.128 3.872 3 C -0.157 4.157 4 N -0.583 5.583 5 C 0.245 3.755 6 C -0.521 4.521 7 H 0.058 0.942 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.286 1.286 13 H -0.275 1.275 14 C 0.500 3.500 15 O -0.543 6.543 16 C 0.098 3.902 17 N -0.710 5.710 18 C 0.584 3.416 19 O -0.526 6.526 20 C 0.022 3.978 21 C -0.108 4.108 22 C -0.121 4.121 23 C -0.061 4.061 24 C -0.151 4.151 25 C -0.090 4.090 26 C -0.131 4.131 27 C 0.113 3.887 28 N -0.576 5.576 29 H 0.421 0.579 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.077 0.923 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.042 0.958 39 H 0.263 0.737 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.408 0.592 43 H 0.157 0.843 44 H 0.125 0.875 45 H 0.123 0.877 46 H 0.126 0.874 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.843 -15.115 -13.474 21.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.024 3.976 3 C -0.215 4.215 4 N -0.314 5.314 5 C 0.127 3.873 6 C -0.560 4.560 7 H 0.077 0.923 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.724 3.276 11 H -0.206 1.206 12 H -0.211 1.211 13 H -0.200 1.200 14 C 0.285 3.715 15 O -0.422 6.422 16 C -0.029 4.029 17 N -0.364 5.364 18 C 0.370 3.630 19 O -0.402 6.402 20 C -0.088 4.088 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.080 4.080 24 C -0.170 4.170 25 C -0.109 4.109 26 C -0.152 4.152 27 C 0.003 3.997 28 N -0.181 5.181 29 H 0.260 0.740 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.116 0.884 41 H 0.114 0.886 42 H 0.245 0.755 43 H 0.174 0.826 44 H 0.143 0.857 45 H 0.141 0.859 46 H 0.144 0.856 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 6.631 -14.897 -13.413 21.114 hybrid contribution 0.634 0.874 1.365 1.740 sum 7.265 -14.024 -12.048 19.864 Atomic orbital electron populations 1.22154 0.95178 1.01947 1.02707 1.21110 0.94504 0.94470 0.87534 1.22138 1.01427 0.95389 1.02560 1.48311 1.48165 1.25673 1.09256 1.19312 0.96164 0.95100 0.76746 1.21396 1.08950 1.23531 1.02130 0.92330 1.24926 0.95785 0.97097 0.96318 1.69928 1.29508 1.43154 1.10721 0.86532 0.81925 0.81265 0.77922 1.20611 1.21141 1.19957 1.20117 0.79843 0.81676 0.89819 1.90650 1.54001 1.58413 1.39140 1.21269 0.96273 0.88224 0.97127 1.45631 1.51954 1.29217 1.09573 1.17142 0.79437 0.81871 0.84553 1.90845 1.58109 1.65923 1.25330 1.20108 1.04773 0.98120 0.85764 1.20893 0.99292 0.94520 0.98781 1.18218 1.03506 0.98674 0.92126 1.20404 0.95119 0.92664 0.99771 1.20636 1.02385 1.00463 0.93535 1.20881 0.97921 0.97080 0.95063 1.20128 1.00716 0.95373 0.98959 1.18361 0.96446 0.90128 0.94767 1.42039 1.43830 1.24222 1.07994 0.73985 0.91175 0.91975 0.92831 0.90519 0.92664 0.92958 0.89933 0.94433 0.93951 0.92711 0.88440 0.88569 0.75479 0.82560 0.85733 0.85912 0.85572 0.85834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.24 9.17 37.16 0.34 -1.90 16 2 C 0.13 1.97 3.17 -67.93 -0.22 1.75 16 3 C -0.16 -2.46 8.47 37.16 0.31 -2.15 16 4 N -0.58 -11.38 2.39 -167.46 -0.40 -11.78 16 5 C 0.25 5.98 4.59 -5.20 -0.02 5.96 16 6 C -0.52 -13.84 7.83 -34.44 -0.27 -14.11 16 7 H 0.06 1.56 7.63 -52.49 -0.40 1.16 16 8 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 10 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 11 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 14 C 0.50 9.52 7.74 -10.98 -0.09 9.44 16 15 O -0.54 -12.21 15.25 5.56 0.08 -12.12 16 16 C 0.10 1.45 4.47 -5.19 -0.02 1.43 16 17 N -0.71 -9.98 5.52 -62.68 -0.35 -10.32 16 18 C 0.58 8.27 7.80 -12.69 -0.10 8.17 16 19 O -0.53 -8.64 16.84 5.23 0.09 -8.55 16 20 C 0.02 0.28 6.97 -82.29 -0.57 -0.30 16 21 C -0.11 -1.28 10.53 -39.15 -0.41 -1.69 16 22 C -0.12 -1.35 6.16 -106.93 -0.66 -2.01 16 23 C -0.06 -0.55 10.06 -39.53 -0.40 -0.95 16 24 C -0.15 -1.20 9.96 -39.97 -0.40 -1.60 16 25 C -0.09 -0.72 10.01 -39.53 -0.40 -1.11 16 26 C -0.13 -1.20 10.08 -39.42 -0.40 -1.60 16 27 C 0.11 1.25 7.25 -83.97 -0.61 0.64 16 28 N -0.58 -6.27 6.07 -7.35 -0.04 -6.32 16 29 H 0.42 3.87 8.12 -40.82 -0.33 3.54 16 30 H 0.07 1.11 6.66 -51.93 -0.35 0.76 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.99 5.77 -51.93 -0.30 0.69 16 34 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 1.53 6.92 -51.93 -0.36 1.17 16 37 H 0.04 0.93 6.43 -51.93 -0.33 0.59 16 38 H 0.04 1.18 7.42 -51.93 -0.39 0.80 16 39 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 40 H 0.10 1.38 7.79 -51.93 -0.40 0.97 16 41 H 0.10 1.28 7.79 -51.93 -0.40 0.88 16 42 H 0.41 5.57 6.49 -40.82 -0.26 5.30 16 43 H 0.16 1.66 8.06 -52.49 -0.42 1.24 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.12 0.68 8.06 -52.48 -0.42 0.26 16 46 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 47 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -32.71 392.12 -9.46 -42.17 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -6.47 Total: 8.12 kcal Atomic # 6 Polarization: 5.54 SS G_CDS: -4.00 Total: 1.54 kcal Atomic # 7 Polarization: -53.21 SS G_CDS: -0.05 Total: -53.26 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: 0.17 Total: -20.67 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.71 -9.46 -42.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079867006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.802 kcal (2) G-P(sol) polarization free energy of solvation -32.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds