Wall clock time and date at job start Wed Apr 1 2020 02:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46494 * 109.47165 * 350.89838 * 3 2 1 5 5 C 1.36947 * 119.99732 * 267.24198 * 4 3 2 6 6 H 1.08000 * 119.99917 * 325.52959 * 5 4 3 7 7 C 1.38808 * 119.99959 * 145.53453 * 5 4 3 8 8 N 1.31624 * 119.99957 * 156.37853 * 7 5 4 9 9 Si 1.86803 * 120.00199 * 336.37338 * 7 5 4 10 10 H 1.48493 * 109.47203 * 95.45663 * 9 7 5 11 11 H 1.48501 * 109.46972 * 215.45622 * 9 7 5 12 12 H 1.48500 * 109.46655 * 335.45278 * 9 7 5 13 13 C 1.46495 * 120.00526 * 87.24154 * 4 3 2 14 14 C 1.50692 * 109.47514 * 89.99905 * 13 4 3 15 15 O 1.21283 * 119.99860 * 0.02562 * 14 13 4 16 16 N 1.34778 * 120.00311 * 180.02562 * 14 13 4 17 17 C 1.39286 * 120.00125 * 184.85129 * 16 14 13 18 18 C 1.38856 * 120.16414 * 22.86332 * 17 16 14 19 19 C 1.38016 * 120.06944 * 179.97438 * 18 17 16 20 20 C 1.38566 * 120.40755 * 0.02562 * 19 18 17 21 21 C 1.37802 * 120.32961 * 359.97438 * 20 19 18 22 22 C 1.39684 * 119.91757 * 0.02562 * 21 20 19 23 23 C 1.47524 * 120.19749 * 179.97438 * 22 21 20 24 24 O 1.21589 * 120.00101 * 185.46258 * 23 22 21 25 25 N 1.34777 * 119.99692 * 5.46378 * 23 22 21 26 26 C 1.46500 * 119.99568 * 180.02562 * 25 23 22 27 27 C 1.53004 * 109.47265 * 154.99980 * 26 25 23 28 28 C 1.52999 * 109.47273 * 274.99493 * 26 25 23 29 29 H 4.40641 * 5.51348 * 179.97438 * 4 1 2 30 30 H 1.08996 * 109.46835 * 230.89175 * 3 2 1 31 31 H 1.09002 * 109.47046 * 110.89248 * 3 2 1 32 32 H 0.96999 * 120.00148 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.47235 * 329.99457 * 13 4 3 34 34 H 1.09005 * 109.47197 * 210.00358 * 13 4 3 35 35 H 0.96999 * 119.99573 * 4.84929 * 16 14 13 36 36 H 1.08000 * 119.96210 * 0.25387 * 18 17 16 37 37 H 1.08005 * 119.79651 * 179.97438 * 19 18 17 38 38 H 1.07996 * 119.83625 * 179.97438 * 20 19 18 39 39 H 1.07993 * 120.03874 * 180.02562 * 21 20 19 40 40 H 0.96998 * 120.00549 * 359.97438 * 25 23 22 41 41 H 1.08998 * 109.47410 * 35.00213 * 26 25 23 42 42 H 1.09005 * 109.47075 * 59.99621 * 27 26 25 43 43 H 1.08996 * 109.47751 * 180.02562 * 27 26 25 44 44 H 1.09004 * 109.46909 * 300.00275 * 27 26 25 45 45 H 1.08998 * 109.47491 * 300.00670 * 28 26 25 46 46 H 1.09004 * 109.46590 * 60.00519 * 28 26 25 47 47 H 1.08997 * 109.47163 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3629 0.2185 5 6 3.4172 -1.7940 1.4873 6 1 3.8215 -1.1051 2.2142 7 6 3.1837 -3.1163 1.8391 8 7 3.8464 -3.6582 2.8389 9 14 1.9289 -4.1268 0.8936 10 1 2.6188 -4.9103 -0.1625 11 1 1.2365 -5.0534 1.8248 12 1 0.9340 -3.2198 0.2669 13 6 3.3220 -2.2653 -0.9202 14 6 4.7238 -2.1180 -1.4531 15 8 5.4914 -1.3364 -0.9326 16 7 5.1247 -2.8547 -2.5081 17 6 6.4484 -2.7937 -2.9375 18 6 7.4476 -2.3882 -2.0628 19 6 8.7586 -2.3289 -2.4901 20 6 9.0882 -2.6719 -3.7916 21 6 8.1098 -3.0766 -4.6736 22 6 6.7786 -3.1415 -4.2556 23 6 5.7261 -3.5734 -5.1948 24 8 4.5582 -3.5341 -4.8591 25 7 6.0593 -4.0116 -6.4250 26 6 5.0141 -4.4400 -7.3579 27 6 5.5197 -4.2900 -8.7942 28 6 4.6619 -5.9049 -7.0917 29 1 -1.0498 -0.0003 0.0002 30 1 3.0090 0.6490 0.7974 31 1 3.0092 0.3673 -0.9601 32 1 3.6830 -4.5821 3.0850 33 1 2.6071 -2.0145 -1.7039 34 1 3.1619 -3.2944 -0.5984 35 1 4.4914 -3.4274 -2.9683 36 1 7.1993 -2.1232 -1.0457 37 1 9.5323 -2.0125 -1.8062 38 1 10.1170 -2.6218 -4.1164 39 1 8.3720 -3.3432 -5.6867 40 1 6.9910 -4.0427 -6.6930 41 1 4.1272 -3.8219 -7.2186 42 1 6.4067 -4.9081 -8.9335 43 1 4.7419 -4.6082 -9.4884 44 1 5.7707 -3.2464 -8.9839 45 1 5.5489 -6.5229 -7.2310 46 1 4.3017 -6.0117 -6.0685 47 1 3.8840 -6.2234 -7.7855 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281238002.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:55 Heat of formation + Delta-G solvation = 52.592457 kcal Electronic energy + Delta-G solvation = -29988.677101 eV Core-core repulsion = 25946.733858 eV Total energy + Delta-G solvation = -4041.943243 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.81873 -39.41921 -38.01230 -36.29061 -35.93222 -34.19365 -32.55695 -32.42137 -31.35776 -30.35945 -29.86019 -27.60299 -27.56334 -26.16541 -24.13864 -23.08677 -21.92206 -21.28159 -20.83890 -19.96370 -18.04175 -17.58390 -17.41177 -16.81946 -16.57013 -16.29441 -15.55620 -15.33094 -15.14138 -14.73992 -14.44720 -14.36088 -14.14622 -13.98796 -13.66699 -13.36448 -13.24832 -13.07636 -12.89761 -12.67701 -12.58716 -12.43354 -12.25584 -12.03356 -11.82730 -11.72520 -11.55266 -11.28782 -11.23917 -10.68709 -10.38343 -10.17458 -9.90790 -9.76895 -9.65657 -9.40702 -9.36497 -9.20461 -8.89493 -8.57584 -7.83159 -7.14877 -6.07075 -3.47537 0.85710 1.43488 2.81753 2.93432 3.17917 3.22041 3.35474 3.42581 3.47775 3.58371 3.63521 3.98648 4.42861 4.43562 4.65986 4.70315 4.75565 4.90217 4.97139 5.03959 5.12813 5.21860 5.23353 5.30741 5.37090 5.43706 5.44980 5.54576 5.57928 5.69648 5.80282 5.89456 5.95677 5.97838 6.06232 6.20838 6.21344 6.25488 6.40381 6.51252 6.56761 6.69652 6.70681 7.17672 7.26773 7.77326 7.93324 8.10063 8.26962 8.38536 8.69314 8.86166 9.58404 9.91410 11.07757 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010730 B = 0.003465 C = 0.003110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.778660 B = 8079.096424 C = 8999.737721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.169 4.169 3 C 0.244 3.756 4 N -0.569 5.569 5 C -0.264 4.264 6 H 0.088 0.912 7 C 0.037 3.963 8 N -0.889 5.889 9 Si 0.860 3.140 10 H -0.284 1.284 11 H -0.295 1.295 12 H -0.261 1.261 13 C 0.119 3.881 14 C 0.487 3.513 15 O -0.494 6.494 16 N -0.670 5.670 17 C 0.234 3.766 18 C -0.150 4.150 19 C -0.066 4.066 20 C -0.164 4.164 21 C -0.065 4.065 22 C -0.199 4.199 23 C 0.570 3.430 24 O -0.543 6.543 25 N -0.724 5.724 26 C 0.135 3.865 27 C -0.160 4.160 28 C -0.165 4.165 29 H 0.204 0.796 30 H 0.086 0.914 31 H 0.067 0.933 32 H 0.265 0.735 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.420 0.580 36 H 0.162 0.838 37 H 0.128 0.872 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.399 0.601 41 H 0.090 0.910 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.062 0.938 45 H 0.056 0.944 46 H 0.063 0.937 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.368 -1.847 -22.555 23.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 C -0.171 4.171 3 C 0.119 3.881 4 N -0.287 5.287 5 C -0.392 4.392 6 H 0.106 0.894 7 C -0.164 4.164 8 N -0.529 5.529 9 Si 0.689 3.311 10 H -0.213 1.213 11 H -0.222 1.222 12 H -0.185 1.185 13 C -0.011 4.011 14 C 0.273 3.727 15 O -0.366 6.366 16 N -0.320 5.320 17 C 0.133 3.867 18 C -0.170 4.170 19 C -0.085 4.085 20 C -0.183 4.183 21 C -0.084 4.084 22 C -0.206 4.206 23 C 0.360 3.640 24 O -0.422 6.422 25 N -0.376 5.376 26 C 0.031 3.969 27 C -0.218 4.218 28 C -0.223 4.223 29 H 0.221 0.779 30 H 0.104 0.896 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.264 0.736 36 H 0.180 0.820 37 H 0.146 0.854 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.234 0.766 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.081 0.919 45 H 0.075 0.925 46 H 0.082 0.918 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.962 -1.397 -21.724 22.855 hybrid contribution -0.688 -1.231 -0.867 1.655 sum 6.274 -2.628 -22.591 23.593 Atomic orbital electron populations 1.24694 0.95767 1.02802 1.04026 1.25105 0.96143 0.98218 0.97657 1.18143 0.81547 0.87766 1.00629 1.43731 1.72330 1.10157 1.02464 1.18830 1.37149 0.95964 0.87290 0.89428 1.25394 0.97599 0.97155 0.96238 1.69877 1.39125 1.13517 1.30339 0.87209 0.84364 0.80330 0.79182 1.21258 1.22239 1.18504 1.21355 0.90588 0.97678 0.91497 1.23169 0.92907 0.78891 0.77726 1.90543 1.54755 1.35024 1.56321 1.44608 1.09152 1.45571 1.32711 1.17983 0.85503 0.92752 0.90505 1.21785 0.91301 1.01977 1.01965 1.21297 0.96078 0.95462 0.95674 1.20931 0.99155 1.03997 0.94260 1.20921 0.91177 0.97367 0.98940 1.19488 0.94221 1.13772 0.93094 1.18200 0.88187 0.76103 0.81508 1.90573 1.19851 1.55676 1.76073 1.45963 1.10467 1.66869 1.14314 1.20959 0.91640 0.96063 0.88210 1.22082 1.02085 1.02490 0.95152 1.22198 1.01642 0.95558 1.02898 0.77875 0.89609 0.91469 0.92521 0.90426 0.89607 0.73565 0.82044 0.85399 0.85816 0.86047 0.76564 0.89202 0.92078 0.90858 0.91930 0.92512 0.91835 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.76 19.25 29.55 0.57 -4.19 16 2 C -0.17 -3.48 13.68 -37.12 -0.51 -3.99 16 3 C 0.24 5.12 6.14 -6.83 -0.04 5.08 16 4 N -0.57 -13.83 1.58 -177.96 -0.28 -14.11 16 5 C -0.26 -7.44 9.92 -15.06 -0.15 -7.59 16 6 H 0.09 2.66 8.06 -52.49 -0.42 2.23 16 7 C 0.04 1.08 5.30 -17.43 -0.09 0.98 16 8 N -0.89 -27.05 13.97 55.49 0.78 -26.28 16 9 Si 0.86 21.81 24.99 -169.99 -4.25 17.57 16 10 H -0.28 -6.89 6.65 56.52 0.38 -6.52 16 11 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 12 H -0.26 -6.55 7.11 56.52 0.40 -6.15 16 13 C 0.12 2.66 5.02 -5.20 -0.03 2.63 16 14 C 0.49 10.49 7.72 -10.99 -0.08 10.40 16 15 O -0.49 -11.66 13.46 5.56 0.07 -11.59 16 16 N -0.67 -12.59 4.91 -9.69 -0.05 -12.63 16 17 C 0.23 3.99 6.47 -83.48 -0.54 3.45 16 18 C -0.15 -2.53 8.73 -39.43 -0.34 -2.87 16 19 C -0.07 -0.86 10.03 -39.54 -0.40 -1.25 16 20 C -0.16 -1.74 10.02 -39.62 -0.40 -2.14 16 21 C -0.06 -0.68 9.52 -39.20 -0.37 -1.05 16 22 C -0.20 -2.75 5.89 -104.81 -0.62 -3.37 16 23 C 0.57 7.62 7.71 -12.48 -0.10 7.53 16 24 O -0.54 -8.85 13.45 5.29 0.07 -8.78 16 25 N -0.72 -6.70 5.03 -54.85 -0.28 -6.98 16 26 C 0.14 1.13 3.18 -67.93 -0.22 0.91 16 27 C -0.16 -0.86 9.38 37.16 0.35 -0.52 16 28 C -0.16 -1.36 9.48 37.16 0.35 -1.00 16 29 H 0.20 2.98 7.80 -54.10 -0.42 2.56 16 30 H 0.09 1.75 8.02 -51.93 -0.42 1.34 16 31 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 32 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 33 H 0.08 1.54 8.07 -51.93 -0.42 1.12 16 34 H 0.09 2.05 2.95 -51.93 -0.15 1.89 16 35 H 0.42 7.59 5.90 -40.82 -0.24 7.35 16 36 H 0.16 3.21 5.62 -52.49 -0.30 2.91 16 37 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 39 H 0.12 0.81 6.44 -52.49 -0.34 0.48 16 40 H 0.40 2.61 6.66 -40.82 -0.27 2.34 16 41 H 0.09 0.92 7.58 -51.93 -0.39 0.53 16 42 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 394.18 15.07 5.94 5.94 Total: -1.00 -34.46 394.18 -6.94 -41.40 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -6.34 Total: 12.46 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -2.61 Total: 3.01 kcal Atomic # 7 Polarization: -60.17 SS G_CDS: 0.17 Total: -60.00 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.15 Total: -20.37 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.25 Total: 17.57 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.46 -6.94 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281238002.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.993 kcal (2) G-P(sol) polarization free energy of solvation -34.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds