Wall clock time and date at job start Wed Apr 1 2020 01:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46895 * 109.46607 * 229.17874 * 3 2 1 5 5 C 1.46855 * 110.99627 * 169.99876 * 4 3 2 6 6 C 1.53034 * 109.52226 * 185.83885 * 5 4 3 7 7 C 1.53124 * 109.27931 * 300.82204 * 6 5 4 8 8 N 1.46502 * 109.52315 * 177.56262 * 7 6 5 9 9 C 1.34768 * 120.00166 * 155.00231 * 8 7 6 10 10 O 1.21591 * 120.00361 * 359.97438 * 9 8 7 11 11 N 1.34775 * 120.00445 * 179.97438 * 9 8 7 12 12 C 1.39943 * 120.00484 * 174.72950 * 11 9 8 13 13 C 1.38955 * 120.03478 * 326.34751 * 12 11 9 14 14 C 1.38155 * 120.06838 * 180.02562 * 13 12 11 15 15 C 1.38176 * 120.13876 * 359.70055 * 14 13 12 16 16 C 1.38912 * 120.06629 * 0.55355 * 15 14 13 17 17 O 1.35747 * 120.03448 * 179.74558 * 16 15 14 18 18 C 1.34825 * 116.99973 * 173.82546 * 17 16 15 19 19 H 1.07996 * 120.00187 * 354.59146 * 18 17 16 20 20 C 1.38657 * 119.99760 * 174.59112 * 18 17 16 21 21 N 1.31562 * 120.00184 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99892 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46810 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47005 * 120.00058 * 22 20 18 25 25 H 1.48497 * 109.47165 * 240.00211 * 22 20 18 26 26 C 1.38708 * 120.03573 * 146.36795 * 12 11 9 27 27 C 1.53115 * 109.16054 * 57.65429 * 7 6 5 28 28 C 1.46844 * 111.00250 * 294.20860 * 4 3 2 29 29 H 4.40875 * 5.52109 * 179.97438 * 4 1 2 30 30 H 1.08998 * 109.46908 * 109.18054 * 3 2 1 31 31 H 1.09003 * 109.47031 * 349.18080 * 3 2 1 32 32 H 1.09005 * 109.46177 * 65.82617 * 5 4 3 33 33 H 1.08997 * 109.45276 * 305.85114 * 5 4 3 34 34 H 1.08997 * 109.50463 * 180.88463 * 6 5 4 35 35 H 1.08999 * 109.50905 * 60.76206 * 6 5 4 36 36 H 1.09002 * 109.52187 * 297.68326 * 7 6 5 37 37 H 0.97003 * 119.99930 * 334.99590 * 8 7 6 38 38 H 0.97006 * 119.99843 * 354.73322 * 11 9 8 39 39 H 1.07998 * 119.96551 * 0.02562 * 13 12 11 40 40 H 1.07997 * 119.93284 * 180.02562 * 14 13 12 41 41 H 1.07993 * 119.96695 * 180.30197 * 15 14 13 42 42 H 0.97001 * 120.00059 * 179.97438 * 21 20 18 43 43 H 1.07999 * 120.07020 * 0.02562 * 26 12 11 44 44 H 1.09004 * 109.50307 * 62.29009 * 27 7 6 45 45 H 1.08997 * 109.50677 * 182.40103 * 27 7 6 46 46 H 1.08997 * 109.46408 * 294.18083 * 28 4 3 47 47 H 1.08995 * 109.46140 * 54.15890 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1352 0.9062 1.0481 5 6 4.5836 0.7569 1.2387 6 6 5.0327 1.6045 2.4310 7 6 4.6821 3.0719 2.1688 8 7 5.0570 3.8802 3.3317 9 6 5.3240 5.1927 3.1823 10 8 5.2542 5.7060 2.0822 11 7 5.6683 5.9365 4.2522 12 6 6.0524 7.2714 4.0821 13 6 6.7411 7.6566 2.9384 14 6 7.1210 8.9742 2.7700 15 6 6.8124 9.9139 3.7348 16 6 6.1288 9.5341 4.8828 17 8 5.8304 10.4569 5.8326 18 6 5.0563 10.0506 6.8590 19 1 4.6315 9.0577 6.8549 20 6 4.8056 10.9076 7.9198 21 7 5.3227 12.1173 7.9246 22 14 3.7325 10.3450 9.3416 23 1 3.2766 8.9530 9.0969 24 1 4.5154 10.3946 10.6024 25 1 2.5530 11.2399 9.4558 26 6 5.7464 8.2112 5.0552 27 6 3.1752 3.1928 1.9258 28 6 2.7800 2.2991 0.7480 29 1 -1.0501 -0.0001 -0.0004 30 1 3.0092 0.3385 -0.9706 31 1 3.0099 -1.0086 0.1929 32 1 5.1043 1.0890 0.3404 33 1 4.8187 -0.2904 1.4285 34 1 6.1102 1.5058 2.5626 35 1 4.5228 1.2641 3.3323 36 1 5.2232 3.4243 1.2906 37 1 5.1129 3.4707 4.2093 38 1 5.6500 5.5464 5.1402 39 1 6.9795 6.9253 2.1803 40 1 7.6558 9.2713 1.8800 41 1 7.1065 10.9440 3.5981 42 1 5.1471 12.7170 8.6665 43 1 5.2119 7.9142 5.9454 44 1 2.6360 2.8774 2.8190 45 1 2.9256 4.2287 1.6963 46 1 3.3090 2.6239 -0.1479 47 1 1.7052 2.3720 0.5817 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929742377.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:06 Heat of formation + Delta-G solvation = 36.526336 kcal Electronic energy + Delta-G solvation = -28592.761008 eV Core-core repulsion = 24550.121086 eV Total energy + Delta-G solvation = -4042.639922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.57270 -39.46157 -38.61680 -36.66590 -35.56122 -34.19191 -33.49804 -32.22294 -31.40270 -31.20812 -29.23865 -28.42328 -26.87868 -25.28216 -23.64932 -23.52018 -21.89947 -21.75325 -20.53731 -20.15094 -18.58230 -18.45320 -17.84984 -17.40333 -16.64710 -15.89595 -15.68554 -15.37483 -15.14581 -15.10848 -14.80195 -14.55106 -14.14458 -14.07948 -13.92630 -13.73612 -13.51679 -13.32101 -13.15950 -12.94260 -12.51351 -12.32474 -11.82679 -11.73632 -11.60861 -11.56975 -11.25103 -11.11145 -10.99293 -10.95770 -10.70304 -10.69216 -10.51573 -10.42004 -10.02884 -9.61004 -9.45732 -9.14637 -8.82473 -8.78796 -7.67588 -7.10911 -6.43432 -4.02877 2.09225 2.32128 2.42742 2.49805 2.67757 3.11895 3.13064 3.18599 3.33433 3.60110 3.96910 4.01539 4.17381 4.37321 4.52660 4.63778 4.64883 4.81404 4.92886 4.97607 5.06271 5.12419 5.15486 5.24647 5.28632 5.30770 5.44763 5.54548 5.62830 5.69300 5.70670 5.83699 6.01304 6.04674 6.11948 6.27405 6.29280 6.41984 6.52433 6.59108 6.61602 6.83364 7.03912 7.13884 7.27197 7.31092 7.36488 7.45833 7.85860 8.01030 8.05497 8.66126 9.02228 9.73438 10.74786 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.014878 B = 0.002023 C = 0.001876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.471096 B =13835.976379 C =14922.502335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.182 4.182 3 C 0.163 3.837 4 N -0.537 5.537 5 C 0.061 3.939 6 C -0.123 4.123 7 C 0.164 3.836 8 N -0.743 5.743 9 C 0.703 3.297 10 O -0.571 6.571 11 N -0.682 5.682 12 C 0.199 3.801 13 C -0.205 4.205 14 C -0.063 4.063 15 C -0.202 4.202 16 C 0.169 3.831 17 O -0.177 6.177 18 C -0.390 4.390 19 H 0.090 0.910 20 C 0.038 3.962 21 N -0.862 5.862 22 Si 0.940 3.060 23 H -0.268 1.268 24 H -0.276 1.276 25 H -0.276 1.276 26 C -0.258 4.258 27 C -0.128 4.128 28 C 0.059 3.941 29 H 0.217 0.783 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.396 0.604 38 H 0.402 0.598 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.118 0.882 42 H 0.269 0.731 43 H 0.129 0.871 44 H 0.073 0.927 45 H 0.077 0.923 46 H 0.039 0.961 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 -25.531 -11.620 28.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.183 4.183 3 C 0.036 3.964 4 N -0.262 5.262 5 C -0.067 4.067 6 C -0.162 4.162 7 C 0.059 3.941 8 N -0.398 5.398 9 C 0.404 3.596 10 O -0.447 6.447 11 N -0.329 5.329 12 C 0.105 3.895 13 C -0.226 4.226 14 C -0.082 4.082 15 C -0.222 4.222 16 C 0.115 3.885 17 O -0.081 6.081 18 C -0.467 4.467 19 H 0.108 0.892 20 C -0.166 4.166 21 N -0.498 5.498 22 Si 0.765 3.235 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.280 4.280 27 C -0.167 4.167 28 C -0.070 4.070 29 H 0.234 0.766 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.105 0.895 37 H 0.229 0.771 38 H 0.237 0.763 39 H 0.137 0.863 40 H 0.133 0.867 41 H 0.136 0.864 42 H 0.079 0.921 43 H 0.147 0.853 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.057 0.943 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.092 -24.781 -12.028 27.719 hybrid contribution -0.493 -0.513 0.955 1.191 sum -3.585 -25.295 -11.074 27.844 Atomic orbital electron populations 1.24935 0.95945 1.00191 1.00286 1.22793 0.94168 1.00781 1.00533 1.18972 0.85302 0.98175 0.93944 1.61932 1.13999 1.06202 1.44106 1.22028 0.86656 1.00559 0.97506 1.21866 1.01545 0.93464 0.99286 1.20828 0.95074 0.89423 0.88778 1.45174 1.75250 1.07806 1.11556 1.15913 0.77841 0.81143 0.84695 1.90945 1.58285 1.71151 1.24280 1.42606 1.70189 1.11073 1.09042 1.17175 0.95240 0.81209 0.95829 1.20553 1.05890 0.96894 0.99219 1.20524 0.98009 0.92312 0.97373 1.20237 1.07608 1.00013 0.94366 1.19067 0.91986 0.87851 0.89614 1.84017 1.60701 1.33584 1.29782 1.21308 1.26207 1.01431 0.97710 0.89242 1.25277 0.98003 0.95209 0.98077 1.70049 1.42163 1.06018 1.31541 0.85665 0.79068 0.78771 0.79994 1.19230 1.20191 1.20164 1.20783 1.11841 0.92666 1.02688 1.22019 0.95943 0.99993 0.98768 1.22091 1.01293 0.86642 0.96930 0.76611 0.92324 0.88398 0.94100 0.89888 0.90456 0.90305 0.89509 0.77077 0.76340 0.86280 0.86687 0.86434 0.92113 0.85327 0.90877 0.90463 0.94265 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 19.25 29.55 0.57 -0.91 16 2 C -0.18 -1.52 12.34 -37.12 -0.46 -1.98 16 3 C 0.16 1.08 5.46 -6.61 -0.04 1.04 16 4 N -0.54 -4.09 4.63 -238.18 -1.10 -5.19 16 5 C 0.06 0.37 5.46 -3.83 -0.02 0.34 16 6 C -0.12 -0.80 5.57 -26.65 -0.15 -0.95 16 7 C 0.16 1.55 2.52 -67.81 -0.17 1.38 16 8 N -0.74 -7.67 5.08 -58.55 -0.30 -7.97 16 9 C 0.70 10.55 8.27 -86.93 -0.72 9.83 16 10 O -0.57 -10.74 13.71 5.29 0.07 -10.66 16 11 N -0.68 -10.39 5.35 -14.24 -0.08 -10.46 16 12 C 0.20 3.87 6.27 -83.72 -0.52 3.34 16 13 C -0.20 -4.00 8.65 -39.35 -0.34 -4.34 16 14 C -0.06 -1.22 10.03 -39.63 -0.40 -1.61 16 15 C -0.20 -4.40 9.99 -39.35 -0.39 -4.80 16 16 C 0.17 4.13 6.64 -39.13 -0.26 3.87 16 17 O -0.18 -5.07 9.76 0.07 0.00 -5.07 16 18 C -0.39 -10.86 9.44 30.89 0.29 -10.57 16 19 H 0.09 2.31 5.30 -52.49 -0.28 2.03 16 20 C 0.04 1.05 5.49 -17.51 -0.10 0.96 16 21 N -0.86 -25.28 13.67 55.48 0.76 -24.52 16 22 Si 0.94 20.42 29.55 -169.99 -5.02 15.40 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 25 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 26 C -0.26 -5.63 9.04 -39.21 -0.35 -5.99 16 27 C -0.13 -1.27 5.67 -26.65 -0.15 -1.42 16 28 C 0.06 0.52 5.30 -3.84 -0.02 0.49 16 29 H 0.22 0.96 7.80 -54.09 -0.42 0.54 16 30 H 0.06 0.34 8.12 -51.93 -0.42 -0.08 16 31 H 0.10 0.49 7.99 -51.93 -0.41 0.07 16 32 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.08 0.38 8.01 -51.93 -0.42 -0.04 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.99 7.57 -51.93 -0.39 0.59 16 37 H 0.40 2.97 8.63 -40.82 -0.35 2.61 16 38 H 0.40 4.79 8.83 -40.82 -0.36 4.43 16 39 H 0.12 2.30 6.43 -52.49 -0.34 1.96 16 40 H 0.12 1.84 8.06 -52.49 -0.42 1.42 16 41 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 42 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.13 2.76 5.72 -52.49 -0.30 2.46 16 44 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.74 7.11 -51.93 -0.37 0.37 16 LS Contribution 393.27 15.07 5.93 5.93 Total: -1.00 -34.49 393.27 -9.56 -44.05 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -6.58 Total: 9.80 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -3.23 Total: -11.30 kcal Atomic # 7 Polarization: -47.42 SS G_CDS: -0.72 Total: -48.14 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: 0.07 Total: -15.74 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.49 -9.56 -44.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929742377.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.574 kcal (2) G-P(sol) polarization free energy of solvation -34.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.048 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds