Wall clock time and date at job start Wed Apr 1 2020 02:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46838 * 2 1 4 4 N 1.46499 * 109.46953 * 179.97438 * 3 2 1 5 5 C 1.34781 * 120.00010 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99976 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00026 * 180.02562 * 5 4 3 8 8 N 1.46898 * 109.46796 * 180.02562 * 7 5 4 9 9 C 1.46902 * 111.00283 * 66.04964 * 8 7 5 10 10 C 1.46906 * 110.99888 * 189.99926 * 8 7 5 11 11 H 1.08994 * 110.88334 * 300.70449 * 10 8 7 12 12 C 1.55163 * 111.00417 * 176.81982 * 10 8 7 13 13 C 1.54370 * 102.91806 * 206.45369 * 12 10 8 14 14 N 1.47024 * 107.28856 * 22.14254 * 13 12 10 15 15 C 1.34777 * 125.64516 * 181.06117 * 14 13 12 16 16 O 1.21282 * 119.99844 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.99993 * 0.02974 * 15 14 13 18 18 S 1.81008 * 109.47010 * 180.02562 * 17 15 14 19 19 C 1.76194 * 100.00048 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99914 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00158 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00189 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99747 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47292 * 89.99475 * 23 21 19 25 25 H 1.48494 * 109.47355 * 209.99444 * 23 21 19 26 26 H 1.48500 * 109.47311 * 329.99701 * 23 21 19 27 27 C 1.47424 * 108.70378 * 1.08925 * 14 13 12 28 28 H 1.08999 * 109.47039 * 299.99552 * 1 2 3 29 29 H 1.08996 * 109.47420 * 60.00361 * 1 2 3 30 30 H 1.09002 * 109.46635 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47733 * 240.00209 * 2 1 3 32 32 H 1.09004 * 109.47349 * 119.99397 * 2 1 3 33 33 H 1.09004 * 109.47357 * 60.00232 * 3 2 1 34 34 H 1.09000 * 109.47260 * 300.00202 * 3 2 1 35 35 H 0.96995 * 120.00439 * 0.02562 * 4 3 2 36 36 H 1.08999 * 109.47012 * 60.00619 * 7 5 4 37 37 H 1.08996 * 109.47316 * 299.99890 * 7 5 4 38 38 H 1.09004 * 109.47457 * 183.95363 * 9 8 7 39 39 H 1.09001 * 109.46615 * 303.95014 * 9 8 7 40 40 H 1.08990 * 109.47358 * 63.94680 * 9 8 7 41 41 H 1.08999 * 110.71559 * 324.78777 * 12 10 8 42 42 H 1.09002 * 110.71669 * 88.06396 * 12 10 8 43 43 H 1.08998 * 109.84556 * 262.73047 * 13 12 10 44 44 H 1.09004 * 110.02878 * 141.64871 * 13 12 10 45 45 H 1.08992 * 109.47798 * 300.00454 * 17 15 14 46 46 H 1.09001 * 109.47172 * 60.00942 * 17 15 14 47 47 H 0.96989 * 120.00079 * 180.02562 * 22 21 19 48 48 H 1.09007 * 110.36412 * 217.03893 * 27 14 13 49 49 H 1.08993 * 110.46033 * 94.76328 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1788 2.6099 0.0002 6 8 3.5724 3.6601 -0.0002 7 6 5.6858 2.6099 0.0003 8 7 6.1753 3.9949 0.0004 9 6 5.8259 4.6767 1.2538 10 6 7.6242 4.0411 -0.2377 11 1 8.1620 3.4838 0.5292 12 6 8.1284 5.5064 -0.3169 13 6 9.3869 5.3910 -1.2034 14 7 9.2563 4.1549 -1.9886 15 6 10.1613 3.6850 -2.8699 16 8 9.9477 2.6498 -3.4646 17 6 11.4385 4.4459 -3.1165 18 16 12.4375 3.5664 -4.3431 19 6 13.8280 4.6446 -4.4353 20 1 13.8603 5.5373 -3.8281 21 6 14.8823 4.3463 -5.2873 22 7 15.9209 5.1521 -5.3565 23 14 14.8268 2.8020 -6.3368 24 1 14.1868 3.1122 -7.6404 25 1 16.2089 2.3109 -6.5683 26 1 14.0404 1.7553 -5.6360 27 6 7.9714 3.5150 -1.6527 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.9900 0.6026 0.0006 36 1 6.0492 2.0958 -0.8896 37 1 6.0491 2.0964 0.8904 38 1 6.1380 5.7197 1.1993 39 1 4.7476 4.6277 1.4056 40 1 6.3325 4.1888 2.0863 41 1 7.3822 6.1460 -0.7883 42 1 8.3869 5.8794 0.6742 43 1 10.2774 5.3400 -0.5769 44 1 9.4527 6.2495 -1.8718 45 1 11.2017 5.4426 -3.4884 46 1 11.9975 4.5292 -2.1844 47 1 16.6575 4.9438 -5.9521 48 1 8.0802 2.4304 -1.6380 49 1 7.2015 3.8086 -2.3662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188958388.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:40 Heat of formation + Delta-G solvation = -64.175415 kcal Electronic energy + Delta-G solvation = -27181.492597 eV Core-core repulsion = 23269.929870 eV Total energy + Delta-G solvation = -3911.562726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.48574 -39.76451 -38.02371 -36.37128 -35.53570 -33.13198 -32.43728 -31.35073 -30.01834 -28.81211 -28.31815 -26.34600 -25.62010 -24.37571 -23.12391 -22.15617 -20.84382 -20.41496 -19.40645 -17.82782 -17.35109 -17.07770 -16.65630 -16.47745 -16.28130 -15.57949 -15.20498 -14.97117 -14.95374 -14.71664 -14.53091 -14.06344 -13.81633 -13.57517 -13.51836 -13.28861 -13.05239 -12.88896 -12.82950 -12.62780 -12.56946 -12.24642 -11.98536 -11.91835 -11.71407 -11.67959 -11.41888 -11.26019 -11.18733 -11.14806 -11.00465 -10.60585 -10.08818 -9.85804 -9.54385 -9.48866 -9.00019 -8.74497 -8.58086 -8.49768 -6.91938 -6.28627 -4.00439 2.29901 2.53988 2.71769 2.93869 3.16384 3.33574 3.50556 3.54975 3.68660 4.09292 4.25094 4.33486 4.36384 4.41504 4.45785 4.68301 4.68769 4.73009 4.80428 4.86795 5.03450 5.06127 5.07165 5.09037 5.10496 5.16039 5.22229 5.24351 5.29409 5.46636 5.47805 5.56562 5.58633 5.64130 5.65428 5.69825 5.74100 5.82494 5.89788 6.02456 6.02687 6.28679 6.49510 6.66660 7.08624 7.56588 7.88101 7.94439 8.41801 8.42523 9.17558 10.80608 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.001830 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.093072 B =15300.692975 C =16528.030584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.119 3.881 4 N -0.736 5.736 5 C 0.515 3.485 6 O -0.520 6.520 7 C 0.031 3.969 8 N -0.512 5.512 9 C 0.019 3.981 10 C 0.067 3.933 11 H 0.061 0.939 12 C -0.121 4.121 13 C 0.102 3.898 14 N -0.624 5.624 15 C 0.548 3.452 16 O -0.519 6.519 17 C -0.117 4.117 18 S -0.143 6.143 19 C -0.521 4.521 20 H 0.088 0.912 21 C 0.096 3.904 22 N -0.880 5.880 23 Si 0.856 3.144 24 H -0.267 1.267 25 H -0.274 1.274 26 H -0.235 1.235 27 C 0.117 3.883 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.401 0.599 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.087 0.913 40 H 0.021 0.979 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.097 0.903 46 H 0.097 0.903 47 H 0.271 0.729 48 H 0.075 0.925 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.578 -6.470 17.142 33.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.004 4.004 4 N -0.390 5.390 5 C 0.301 3.699 6 O -0.395 6.395 7 C -0.100 4.100 8 N -0.237 5.237 9 C -0.128 4.128 10 C -0.042 4.042 11 H 0.079 0.921 12 C -0.159 4.159 13 C -0.022 4.022 14 N -0.361 5.361 15 C 0.337 3.663 16 O -0.393 6.393 17 C -0.268 4.268 18 S 0.084 5.916 19 C -0.669 4.669 20 H 0.106 0.894 21 C -0.112 4.112 22 N -0.517 5.517 23 Si 0.681 3.319 24 H -0.192 1.192 25 H -0.199 1.199 26 H -0.159 1.159 27 C -0.007 4.007 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.105 0.895 40 H 0.040 0.960 41 H 0.108 0.892 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.115 0.885 46 H 0.115 0.885 47 H 0.081 0.919 48 H 0.093 0.907 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.322 -6.952 15.733 33.136 hybrid contribution 1.153 -0.118 0.854 1.440 sum -27.169 -7.069 16.588 32.608 Atomic orbital electron populations 1.21679 0.94474 1.02257 1.02390 1.21745 0.97095 0.95786 1.02822 1.21391 0.79381 0.97176 1.02481 1.46025 1.07467 1.08773 1.76736 1.20529 0.89850 0.83624 0.75928 1.90689 1.70033 1.30984 1.47755 1.22037 0.92422 0.91904 1.03648 1.61632 1.12193 1.13413 1.36434 1.22566 1.03034 0.99188 0.88046 1.22857 0.87106 0.97459 0.96750 0.92073 1.22705 0.96918 0.95919 1.00328 1.22044 0.98393 0.87591 0.94155 1.48362 1.19532 1.25132 1.43093 1.19983 0.83663 0.85116 0.77564 1.90701 1.77355 1.23697 1.47573 1.23250 0.95792 1.02992 1.04737 1.84777 1.19582 1.35047 1.52237 1.22309 1.03269 1.10976 1.30296 0.89378 1.24704 0.94035 0.96787 0.95722 1.69935 1.07527 1.36788 1.37430 0.86737 0.78690 0.84393 0.82050 1.19192 1.19941 1.15938 1.22103 0.85898 0.98045 0.94653 0.92364 0.92252 0.92112 0.91158 0.91319 0.91575 0.91393 0.76553 0.87418 0.91636 0.90824 0.89467 0.96011 0.89154 0.89978 0.91055 0.90742 0.88498 0.88519 0.91944 0.90704 0.90456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.53 9.91 37.16 0.37 -0.16 16 2 C -0.14 -0.50 6.05 -26.73 -0.16 -0.66 16 3 C 0.12 0.70 5.67 -4.04 -0.02 0.67 16 4 N -0.74 -4.42 5.56 -60.29 -0.33 -4.76 16 5 C 0.52 4.54 7.52 -10.98 -0.08 4.46 16 6 O -0.52 -6.58 14.33 5.56 0.08 -6.50 16 7 C 0.03 0.23 5.34 -4.98 -0.03 0.20 16 8 N -0.51 -4.62 4.40 -233.74 -1.03 -5.65 16 9 C 0.02 0.16 8.97 60.07 0.54 0.70 16 10 C 0.07 0.60 2.71 -65.56 -0.18 0.43 16 11 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 12 C -0.12 -1.00 5.24 -24.87 -0.13 -1.13 16 13 C 0.10 1.07 6.49 -3.04 -0.02 1.05 16 14 N -0.62 -8.74 3.33 -170.49 -0.57 -9.30 16 15 C 0.55 10.19 7.87 -10.99 -0.09 10.10 16 16 O -0.52 -11.48 16.12 5.56 0.09 -11.39 16 17 C -0.12 -2.33 5.35 36.00 0.19 -2.13 16 18 S -0.14 -3.66 18.55 -107.50 -1.99 -5.65 16 19 C -0.52 -15.06 10.04 30.94 0.31 -14.75 16 20 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 21 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 22 N -0.88 -26.58 13.97 55.49 0.78 -25.80 16 23 Si 0.86 21.84 27.74 -169.99 -4.72 17.12 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 27 C 0.12 1.37 5.47 -2.53 -0.01 1.35 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.21 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.40 1.35 8.47 -40.82 -0.35 1.01 16 36 H 0.11 0.73 6.81 -51.93 -0.35 0.38 16 37 H 0.07 0.37 8.12 -51.93 -0.42 -0.05 16 38 H 0.07 0.56 7.11 -51.93 -0.37 0.19 16 39 H 0.09 0.85 5.83 -51.93 -0.30 0.55 16 40 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.08 0.54 8.09 -51.93 -0.42 0.12 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.10 1.81 8.14 -51.92 -0.42 1.39 16 46 H 0.10 1.79 8.14 -51.92 -0.42 1.36 16 47 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 48 H 0.07 0.90 7.69 -51.93 -0.40 0.50 16 49 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 407.64 15.07 6.14 6.14 Total: -1.00 -36.40 407.64 -9.49 -45.89 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -8.53 Total: -2.96 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: 0.59 Total: 2.85 kcal Atomic # 7 Polarization: -44.36 SS G_CDS: -1.15 Total: -45.51 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.17 Total: -17.89 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.72 Total: 17.12 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -1.99 Total: -5.65 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -36.40 -9.49 -45.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958388.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.283 kcal (2) G-P(sol) polarization free energy of solvation -36.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds