Wall clock time and date at job start Wed Apr 1 2020 02:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46838 * 2 1 4 4 N 1.46499 * 109.46953 * 179.97438 * 3 2 1 5 5 C 1.34781 * 120.00010 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99976 * 0.02562 * 5 4 3 7 7 C 1.50702 * 120.00026 * 180.02562 * 5 4 3 8 8 N 1.46898 * 109.46796 * 180.02562 * 7 5 4 9 9 C 1.46902 * 111.00283 * 66.04964 * 8 7 5 10 10 C 1.46906 * 110.99888 * 189.99926 * 8 7 5 11 11 H 1.08994 * 110.88334 * 300.70449 * 10 8 7 12 12 C 1.55163 * 111.00417 * 176.81982 * 10 8 7 13 13 C 1.54370 * 102.91806 * 206.45369 * 12 10 8 14 14 N 1.47024 * 107.28856 * 22.14254 * 13 12 10 15 15 C 1.34777 * 125.64516 * 181.06117 * 14 13 12 16 16 O 1.21282 * 119.99844 * 180.02562 * 15 14 13 17 17 C 1.50697 * 119.99993 * 0.02974 * 15 14 13 18 18 S 1.81008 * 109.47010 * 180.02562 * 17 15 14 19 19 C 1.76194 * 100.00048 * 180.02562 * 18 17 15 20 20 H 1.08006 * 119.99914 * 0.02562 * 19 18 17 21 21 C 1.38802 * 120.00158 * 179.97438 * 19 18 17 22 22 N 1.31631 * 120.00189 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99747 * 0.02562 * 21 19 18 24 24 H 1.48500 * 109.47292 * 89.99475 * 23 21 19 25 25 H 1.48494 * 109.47355 * 209.99444 * 23 21 19 26 26 H 1.48500 * 109.47311 * 329.99701 * 23 21 19 27 27 C 1.47424 * 108.70378 * 1.08925 * 14 13 12 28 28 H 1.08999 * 109.47039 * 299.99552 * 1 2 3 29 29 H 1.08996 * 109.47420 * 60.00361 * 1 2 3 30 30 H 1.09002 * 109.46635 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47733 * 240.00209 * 2 1 3 32 32 H 1.09004 * 109.47349 * 119.99397 * 2 1 3 33 33 H 1.09004 * 109.47357 * 60.00232 * 3 2 1 34 34 H 1.09000 * 109.47260 * 300.00202 * 3 2 1 35 35 H 0.96995 * 120.00439 * 0.02562 * 4 3 2 36 36 H 1.08999 * 109.47012 * 60.00619 * 7 5 4 37 37 H 1.08996 * 109.47316 * 299.99890 * 7 5 4 38 38 H 1.09004 * 109.47457 * 183.95363 * 9 8 7 39 39 H 1.09001 * 109.46615 * 303.95014 * 9 8 7 40 40 H 1.08990 * 109.47358 * 63.94680 * 9 8 7 41 41 H 1.08999 * 110.71559 * 324.78777 * 12 10 8 42 42 H 1.09002 * 110.71669 * 88.06396 * 12 10 8 43 43 H 1.08998 * 109.84556 * 262.73047 * 13 12 10 44 44 H 1.09004 * 110.02878 * 141.64871 * 13 12 10 45 45 H 1.08992 * 109.47798 * 300.00454 * 17 15 14 46 46 H 1.09001 * 109.47172 * 60.00942 * 17 15 14 47 47 H 0.96989 * 120.00079 * 180.02562 * 22 21 19 48 48 H 1.09007 * 110.36412 * 217.03893 * 27 14 13 49 49 H 1.08993 * 110.46033 * 94.76328 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1788 2.6099 0.0002 6 8 3.5724 3.6601 -0.0002 7 6 5.6858 2.6099 0.0003 8 7 6.1753 3.9949 0.0004 9 6 5.8259 4.6767 1.2538 10 6 7.6242 4.0411 -0.2377 11 1 8.1620 3.4838 0.5292 12 6 8.1284 5.5064 -0.3169 13 6 9.3869 5.3910 -1.2034 14 7 9.2563 4.1549 -1.9886 15 6 10.1613 3.6850 -2.8699 16 8 9.9477 2.6498 -3.4646 17 6 11.4385 4.4459 -3.1165 18 16 12.4375 3.5664 -4.3431 19 6 13.8280 4.6446 -4.4353 20 1 13.8603 5.5373 -3.8281 21 6 14.8823 4.3463 -5.2873 22 7 15.9209 5.1521 -5.3565 23 14 14.8268 2.8020 -6.3368 24 1 14.1868 3.1122 -7.6404 25 1 16.2089 2.3109 -6.5683 26 1 14.0404 1.7553 -5.6360 27 6 7.9714 3.5150 -1.6527 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5138 0.8901 33 1 1.6766 1.9564 0.8900 34 1 1.6765 1.9564 -0.8900 35 1 3.9900 0.6026 0.0006 36 1 6.0492 2.0958 -0.8896 37 1 6.0491 2.0964 0.8904 38 1 6.1380 5.7197 1.1993 39 1 4.7476 4.6277 1.4056 40 1 6.3325 4.1888 2.0863 41 1 7.3822 6.1460 -0.7883 42 1 8.3869 5.8794 0.6742 43 1 10.2774 5.3400 -0.5769 44 1 9.4527 6.2495 -1.8718 45 1 11.2017 5.4426 -3.4884 46 1 11.9975 4.5292 -2.1844 47 1 16.6575 4.9438 -5.9521 48 1 8.0802 2.4304 -1.6380 49 1 7.2015 3.8086 -2.3662 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188958388.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:39 Heat of formation + Delta-G solvation = -91.137513 kcal Electronic energy + Delta-G solvation = -27182.661761 eV Core-core repulsion = 23269.929870 eV Total energy + Delta-G solvation = -3912.731891 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34807 -40.72950 -39.07614 -37.05212 -36.34987 -34.67400 -33.61644 -32.47130 -31.08454 -29.46290 -29.41503 -27.85236 -26.84748 -25.18818 -24.02456 -22.56273 -21.53328 -21.13754 -20.70919 -19.62036 -18.32467 -17.89107 -17.82999 -17.15458 -17.08313 -16.93639 -16.62620 -16.19723 -15.73283 -15.63897 -15.58300 -15.33766 -14.90804 -14.77970 -14.41510 -14.25357 -13.91857 -13.80106 -13.75923 -13.54299 -13.35579 -13.32828 -13.01459 -12.95928 -12.87716 -12.69698 -12.60226 -12.42354 -12.04443 -11.90721 -11.88380 -11.86133 -11.75102 -11.17125 -11.05763 -10.79977 -10.54754 -10.08974 -9.75288 -9.35877 -9.01140 -8.51499 -6.22911 0.95152 1.31707 1.44395 1.49123 1.52483 1.63809 1.93155 2.13691 2.25198 2.67204 2.86767 2.96384 3.28161 3.62101 3.75905 3.79829 3.94103 4.02786 4.06513 4.16431 4.21608 4.28374 4.30227 4.35095 4.37290 4.41222 4.55432 4.60943 4.65661 4.68347 4.75214 4.78522 4.85661 4.87265 4.95770 5.12376 5.14644 5.17245 5.23599 5.26946 5.34618 5.50959 5.70752 5.86664 6.01012 6.11285 6.32427 6.57521 6.93530 7.02494 7.28368 8.60865 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.019937 B = 0.001830 C = 0.001694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.093072 B =15300.692975 C =16528.030584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.128 4.128 3 C 0.119 3.881 4 N -0.724 5.724 5 C 0.512 3.488 6 O -0.564 6.564 7 C 0.032 3.968 8 N -0.529 5.529 9 C 0.025 3.975 10 C 0.081 3.919 11 H 0.074 0.926 12 C -0.111 4.111 13 C 0.092 3.908 14 N -0.615 5.615 15 C 0.549 3.451 16 O -0.563 6.563 17 C -0.102 4.102 18 S -0.174 6.174 19 C -0.529 4.529 20 H 0.063 0.937 21 C 0.047 3.953 22 N -0.916 5.916 23 Si 0.913 3.087 24 H -0.263 1.263 25 H -0.258 1.258 26 H -0.237 1.237 27 C 0.114 3.886 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.415 0.585 36 H 0.113 0.887 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.037 0.963 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.109 0.891 46 H 0.113 0.887 47 H 0.277 0.723 48 H 0.071 0.929 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.419 -7.445 18.574 34.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.165 4.165 3 C -0.005 4.005 4 N -0.377 5.377 5 C 0.298 3.702 6 O -0.443 6.443 7 C -0.099 4.099 8 N -0.254 5.254 9 C -0.123 4.123 10 C -0.028 4.028 11 H 0.092 0.908 12 C -0.149 4.149 13 C -0.030 4.030 14 N -0.349 5.349 15 C 0.337 3.663 16 O -0.441 6.441 17 C -0.253 4.253 18 S 0.052 5.948 19 C -0.677 4.677 20 H 0.081 0.919 21 C -0.158 4.158 22 N -0.554 5.554 23 Si 0.735 3.265 24 H -0.188 1.188 25 H -0.182 1.182 26 H -0.160 1.160 27 C -0.009 4.009 28 H 0.076 0.924 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.252 0.748 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.055 0.945 41 H 0.106 0.894 42 H 0.127 0.873 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.127 0.873 46 H 0.131 0.869 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -29.183 -7.930 17.208 34.794 hybrid contribution 1.276 0.272 0.522 1.405 sum -27.907 -7.659 17.730 33.938 Atomic orbital electron populations 1.21697 0.94373 1.02720 1.02153 1.21688 0.97090 0.94137 1.03615 1.21397 0.79253 0.98540 1.01261 1.45963 1.07647 1.08836 1.75288 1.20853 0.90538 0.83563 0.75236 1.90673 1.70939 1.32597 1.50063 1.22089 0.91292 0.91501 1.04996 1.61563 1.12018 1.14516 1.37275 1.22490 1.02013 0.99664 0.88117 1.22719 0.87388 0.97788 0.94939 0.90792 1.22697 0.95539 0.95473 1.01143 1.22372 1.00287 0.85989 0.94396 1.48300 1.19128 1.26014 1.41499 1.19636 0.83867 0.84528 0.78274 1.90682 1.78274 1.25479 1.49713 1.23201 0.95887 1.02799 1.03428 1.84695 1.19357 1.35699 1.55033 1.22443 1.04742 1.10713 1.29783 0.91927 1.25540 0.93745 0.99630 0.96891 1.70010 1.08346 1.38529 1.38492 0.85881 0.79409 0.80842 0.80332 1.18774 1.18207 1.16047 1.22231 0.84342 0.97911 0.96412 0.92424 0.92756 0.91254 0.90619 0.90165 0.92460 0.93051 0.74821 0.86895 0.89198 0.90232 0.91295 0.94494 0.89421 0.87280 0.89704 0.90288 0.87269 0.86896 0.91343 0.91011 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 71.98 0.71 -0.20 16 2 C -0.13 -0.76 6.05 30.59 0.19 -0.57 16 3 C 0.12 1.34 5.67 86.38 0.49 1.83 16 4 N -0.72 -7.88 5.56 -463.04 -2.57 -10.45 16 5 C 0.51 8.58 7.52 87.66 0.66 9.24 16 6 O -0.56 -14.33 14.33 -3.03 -0.04 -14.38 16 7 C 0.03 0.41 5.34 85.56 0.46 0.87 16 8 N -0.53 -8.43 4.40 -893.43 -3.93 -12.36 16 9 C 0.02 0.35 8.97 127.69 1.15 1.50 16 10 C 0.08 1.22 2.71 46.31 0.13 1.35 16 11 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 12 C -0.11 -1.48 5.24 31.80 0.17 -1.31 16 13 C 0.09 1.67 6.49 86.74 0.56 2.24 16 14 N -0.61 -16.09 3.33 -811.70 -2.70 -18.79 16 15 C 0.55 19.83 7.87 87.66 0.69 20.52 16 16 O -0.56 -24.75 16.12 -3.04 -0.05 -24.80 16 17 C -0.10 -3.96 5.35 71.24 0.38 -3.58 16 18 S -0.17 -8.90 18.55 -56.49 -1.05 -9.95 16 19 C -0.53 -30.90 10.04 67.95 0.68 -30.22 16 20 H 0.06 3.85 8.03 -2.91 -0.02 3.82 16 21 C 0.05 2.79 5.50 84.86 0.47 3.25 16 22 N -0.92 -55.70 13.97 21.65 0.30 -55.39 16 23 Si 0.91 44.99 27.74 68.60 1.90 46.89 16 24 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 25 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.24 -11.62 6.74 99.48 0.67 -10.95 16 27 C 0.11 2.48 5.47 86.86 0.47 2.95 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.32 8.14 -2.38 -0.02 0.30 16 33 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.42 2.01 8.47 -92.71 -0.79 1.23 16 36 H 0.11 1.33 6.81 -2.39 -0.02 1.31 16 37 H 0.09 0.73 8.12 -2.39 -0.02 0.71 16 38 H 0.08 1.01 7.11 -2.38 -0.02 0.99 16 39 H 0.07 1.29 5.83 -2.39 -0.01 1.28 16 40 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.11 0.95 8.09 -2.39 -0.02 0.93 16 43 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 45 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 46 H 0.11 4.00 8.14 -2.39 -0.02 3.98 16 47 H 0.28 15.57 8.31 -92.72 -0.77 14.80 16 48 H 0.07 1.62 7.69 -2.38 -0.02 1.60 16 49 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -79.88 407.64 -0.83 -80.71 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: 0.11 Total: 10.65 kcal Atomic # 6 Polarization: 0.65 SS G_CDS: 7.20 Total: 7.85 kcal Atomic # 7 Polarization: -88.09 SS G_CDS: -8.90 Total: -96.99 kcal Atomic # 8 Polarization: -39.08 SS G_CDS: -0.09 Total: -39.17 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.90 Total: 46.89 kcal Atomic # 16 Polarization: -8.90 SS G_CDS: -1.05 Total: -9.95 kcal Total: -79.88 -0.83 -80.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188958388.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.430 kcal (2) G-P(sol) polarization free energy of solvation -79.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds