Wall clock time and date at job start Wed Apr 1 2020 02:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47216 * 2 1 4 4 N 1.46494 * 109.47447 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00731 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99524 * 359.97438 * 5 4 3 7 7 C 1.50692 * 120.00400 * 179.97438 * 5 4 3 8 8 N 1.46907 * 109.47226 * 179.97438 * 7 5 4 9 9 C 1.46894 * 111.00049 * 179.97438 * 8 7 5 10 10 H 1.09003 * 110.88981 * 322.57493 * 9 8 7 11 11 C 1.55164 * 111.00285 * 198.65244 * 9 8 7 12 12 C 1.54316 * 102.86122 * 206.23119 * 11 9 8 13 13 H 1.08991 * 109.77722 * 141.88874 * 12 11 9 14 14 C 1.53006 * 109.98486 * 263.04661 * 12 11 9 15 15 N 1.47022 * 107.27524 * 22.52478 * 12 11 9 16 16 C 1.34780 * 125.64445 * 180.97088 * 15 12 11 17 17 O 1.21280 * 120.00423 * 359.71250 * 16 15 12 18 18 C 1.50701 * 119.99795 * 179.71926 * 16 15 12 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99640 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47315 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47332 * 119.99854 * 24 22 20 27 27 H 1.48499 * 109.47328 * 240.00154 * 24 22 20 28 28 C 1.47417 * 108.70718 * 0.70388 * 15 12 11 29 29 H 1.08998 * 109.47069 * 300.00523 * 1 2 3 30 30 H 1.09001 * 109.47113 * 59.99839 * 1 2 3 31 31 H 1.08992 * 109.47056 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47191 * 240.00018 * 2 1 3 33 33 H 1.08997 * 109.47033 * 119.99406 * 2 1 3 34 34 H 1.08998 * 109.47528 * 59.99758 * 3 2 1 35 35 H 1.09001 * 109.47211 * 300.00101 * 3 2 1 36 36 H 0.97009 * 119.99707 * 359.97438 * 4 3 2 37 37 H 1.08997 * 109.47182 * 60.00123 * 7 5 4 38 38 H 1.08994 * 109.47456 * 299.99868 * 7 5 4 39 39 H 1.00897 * 110.99637 * 303.95801 * 8 7 5 40 40 H 1.08999 * 110.71826 * 324.78650 * 11 9 8 41 41 H 1.09001 * 110.71871 * 87.88486 * 11 9 8 42 42 H 1.09000 * 109.46764 * 179.32670 * 14 12 11 43 43 H 1.08995 * 109.47173 * 299.33426 * 14 12 11 44 44 H 1.09005 * 109.47008 * 59.33627 * 14 12 11 45 45 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 46 46 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 47 47 H 0.97010 * 119.99946 * 180.02562 * 23 22 20 48 48 H 1.09003 * 110.36538 * 94.93107 * 28 15 12 49 49 H 1.08998 * 110.37116 * 217.14771 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1790 2.6097 -0.0002 6 8 3.5726 3.6600 0.0002 7 6 5.6859 2.6096 -0.0003 8 7 6.1756 3.9947 -0.0004 9 6 7.6440 4.0338 0.0002 10 1 8.0539 3.2359 0.6194 11 6 8.1632 5.4207 0.4634 12 6 9.5444 5.5156 -0.2183 13 1 9.7183 6.5363 -0.5588 14 6 10.6416 5.0974 0.7627 15 7 9.5272 4.6007 -1.3690 16 6 10.5547 4.3806 -2.2129 17 8 11.6048 4.9669 -2.0559 18 6 10.3989 3.4062 -3.3519 19 16 11.9404 3.3320 -4.2977 20 6 11.4879 2.1551 -5.5284 21 1 10.4981 1.7229 -5.5243 22 6 12.4039 1.7827 -6.5026 23 7 13.6102 2.3091 -6.5072 24 14 11.9244 0.5345 -7.8070 25 1 10.5232 0.0968 -7.5821 26 1 12.0401 1.1542 -9.1514 27 1 12.8287 -0.6405 -7.7240 28 6 8.2021 3.9590 -1.4430 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9900 0.6024 -0.0006 37 1 6.0492 2.0962 -0.8904 38 1 6.0493 2.0955 0.8895 39 1 5.8000 4.5109 -0.7817 40 1 7.5026 6.2153 0.1165 41 1 8.2651 5.4517 1.5482 42 1 11.6117 5.1561 0.2693 43 1 10.6314 5.7641 1.6250 44 1 10.4631 4.0739 1.0926 45 1 10.1676 2.4176 -2.9552 46 1 9.5890 3.7349 -4.0032 47 1 14.2503 2.0491 -7.1883 48 1 7.5541 4.5046 -2.1290 49 1 8.3005 2.9208 -1.7601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283943202.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:16 Heat of formation + Delta-G solvation = -77.781877 kcal Electronic energy + Delta-G solvation = -27174.703821 eV Core-core repulsion = 23262.551074 eV Total energy + Delta-G solvation = -3912.152747 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.36102 -39.86032 -37.70907 -36.28428 -35.01403 -33.09394 -32.45804 -32.17889 -30.29727 -28.74847 -27.46328 -25.89967 -25.52124 -25.22332 -22.48155 -22.14816 -21.03951 -20.70435 -19.01026 -17.75679 -17.57962 -16.88326 -16.55196 -16.38747 -16.04355 -15.76682 -15.16103 -14.83754 -14.73892 -14.62639 -14.07169 -13.93282 -13.87286 -13.45709 -13.37023 -13.11744 -13.05467 -12.90457 -12.71771 -12.57172 -12.54283 -12.43879 -12.01961 -11.79976 -11.68270 -11.57418 -11.42316 -11.09861 -11.09594 -11.02430 -10.78399 -10.76900 -10.15895 -9.83424 -9.50997 -9.40320 -9.10166 -8.84646 -8.50619 -8.25442 -6.52800 -6.24437 -3.95006 2.29554 2.61783 2.88656 3.05287 3.18932 3.23124 3.28273 3.54599 3.83111 4.17187 4.24567 4.30771 4.39292 4.42737 4.44410 4.69262 4.71609 4.87105 4.92980 5.01589 5.04496 5.08590 5.10317 5.10728 5.12158 5.24934 5.32728 5.42612 5.47851 5.53839 5.57739 5.58923 5.64163 5.67183 5.74295 5.80166 5.85730 5.99512 6.08047 6.09756 6.30695 6.47603 6.57105 6.89461 7.09266 7.56644 7.66952 7.85957 8.32326 8.56118 9.20820 10.83004 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008481 B = 0.002357 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3300.887315 B =11874.721260 C =14903.275158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.118 3.882 4 N -0.736 5.736 5 C 0.512 3.488 6 O -0.525 6.525 7 C 0.037 3.963 8 N -0.658 5.658 9 C 0.077 3.923 10 H 0.098 0.902 11 C -0.114 4.114 12 C 0.135 3.865 13 H 0.075 0.925 14 C -0.163 4.163 15 N -0.619 5.619 16 C 0.549 3.451 17 O -0.511 6.511 18 C -0.147 4.147 19 S -0.059 6.059 20 C -0.535 4.535 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.866 5.866 24 Si 0.919 3.081 25 H -0.272 1.272 26 H -0.279 1.279 27 H -0.280 1.280 28 C 0.071 3.929 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.401 0.599 37 H 0.065 0.935 38 H 0.105 0.895 39 H 0.355 0.645 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.054 0.946 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.268 0.732 48 H 0.068 0.932 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.946 -3.391 16.942 28.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.175 4.175 3 C -0.005 4.005 4 N -0.389 5.389 5 C 0.298 3.702 6 O -0.400 6.400 7 C -0.096 4.096 8 N -0.290 5.290 9 C -0.034 4.034 10 H 0.116 0.884 11 C -0.152 4.152 12 C 0.031 3.969 13 H 0.093 0.907 14 C -0.221 4.221 15 N -0.357 5.357 16 C 0.337 3.663 17 O -0.385 6.385 18 C -0.298 4.298 19 S 0.167 5.833 20 C -0.683 4.683 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.745 3.255 25 H -0.197 1.197 26 H -0.205 1.205 27 H -0.205 1.205 28 C -0.055 4.055 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.235 0.765 37 H 0.083 0.917 38 H 0.123 0.877 39 H 0.175 0.825 40 H 0.100 0.900 41 H 0.105 0.895 42 H 0.093 0.907 43 H 0.081 0.919 44 H 0.073 0.927 45 H 0.105 0.895 46 H 0.105 0.895 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.652 -1.663 17.706 28.019 hybrid contribution -1.168 -2.303 -2.032 3.286 sum -22.819 -3.967 15.675 27.967 Atomic orbital electron populations 1.21681 0.94469 1.02268 1.02401 1.21744 0.97110 0.95764 1.02835 1.21397 0.79392 0.97204 1.02516 1.46015 1.07494 1.08790 1.76631 1.20606 0.89997 0.83663 0.75959 1.90731 1.70089 1.31151 1.48019 1.21877 0.91808 0.92453 1.03414 1.60244 1.06220 1.11192 1.51346 1.22825 0.86518 0.99233 0.94805 0.88423 1.22692 0.94610 0.96693 1.01229 1.21528 0.95173 0.94082 0.86114 0.90695 1.22151 1.00234 1.01144 0.98578 1.48474 1.12748 1.44888 1.29578 1.20000 0.82089 0.82419 0.81765 1.90694 1.26422 1.49090 1.72284 1.23515 1.07839 0.99905 0.98498 1.85409 1.09738 1.57125 1.30982 1.22888 1.02116 1.28320 1.14994 0.90976 1.24998 0.94492 0.96671 0.97466 1.70027 1.04597 1.41541 1.34011 0.86114 0.78561 0.80266 0.80527 1.19665 1.20531 1.20548 1.23063 0.85451 0.98706 0.98233 0.92323 0.92281 0.92099 0.91194 0.91252 0.91455 0.91472 0.76493 0.91670 0.87731 0.82452 0.90049 0.89494 0.90694 0.91949 0.92712 0.89544 0.89503 0.92210 0.91413 0.90582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.91 37.16 0.37 -0.19 16 2 C -0.14 -0.52 6.05 -26.73 -0.16 -0.68 16 3 C 0.12 0.71 5.67 -4.05 -0.02 0.69 16 4 N -0.74 -4.38 5.56 -60.30 -0.33 -4.72 16 5 C 0.51 4.43 7.87 -10.99 -0.09 4.34 16 6 O -0.53 -6.77 16.20 5.56 0.09 -6.68 16 7 C 0.04 0.24 6.04 -4.98 -0.03 0.21 16 8 N -0.66 -5.49 6.00 -105.72 -0.63 -6.13 16 9 C 0.08 0.65 3.32 -65.56 -0.22 0.44 16 10 H 0.10 0.78 7.92 -51.93 -0.41 0.37 16 11 C -0.11 -1.01 6.19 -24.90 -0.15 -1.17 16 12 C 0.13 1.62 3.48 -66.95 -0.23 1.39 16 13 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 14 C -0.16 -1.96 9.07 37.16 0.34 -1.63 16 15 N -0.62 -8.82 3.08 -163.02 -0.50 -9.32 16 16 C 0.55 10.53 7.65 -10.98 -0.08 10.44 16 17 O -0.51 -11.68 14.77 5.56 0.08 -11.60 16 18 C -0.15 -3.01 5.16 36.01 0.19 -2.82 16 19 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 20 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 21 H 0.07 1.94 7.80 -52.48 -0.41 1.53 16 22 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 23 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 24 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 25 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 28 C 0.07 0.75 6.28 -2.53 -0.02 0.74 16 29 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.40 1.31 8.47 -40.82 -0.35 0.96 16 37 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 38 H 0.10 0.53 8.09 -51.93 -0.42 0.11 16 39 H 0.35 3.19 8.01 -39.29 -0.31 2.87 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.09 0.69 7.84 -51.93 -0.41 0.28 16 42 H 0.07 1.15 6.75 -51.93 -0.35 0.80 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 45 H 0.09 1.63 7.84 -51.92 -0.41 1.22 16 46 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 47 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.07 0.69 7.80 -51.93 -0.41 0.28 16 49 H 0.08 0.78 7.47 -51.93 -0.39 0.39 16 LS Contribution 414.10 15.07 6.24 6.24 Total: -1.00 -36.44 414.10 -9.97 -46.40 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -8.49 Total: -0.17 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 0.08 Total: -1.13 kcal Atomic # 7 Polarization: -44.74 SS G_CDS: -0.74 Total: -45.48 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: 0.17 Total: -18.28 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -36.44 -9.97 -46.40 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283943202.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.378 kcal (2) G-P(sol) polarization free energy of solvation -36.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds