Wall clock time and date at job start Wed Apr 1 2020 02:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47216 * 2 1 4 4 N 1.46494 * 109.47447 * 180.02562 * 3 2 1 5 5 C 1.34776 * 120.00731 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99524 * 359.97438 * 5 4 3 7 7 C 1.50692 * 120.00400 * 179.97438 * 5 4 3 8 8 N 1.46907 * 109.47226 * 179.97438 * 7 5 4 9 9 C 1.46894 * 111.00049 * 179.97438 * 8 7 5 10 10 H 1.09003 * 110.88981 * 322.57493 * 9 8 7 11 11 C 1.55164 * 111.00285 * 198.65244 * 9 8 7 12 12 C 1.54316 * 102.86122 * 206.23119 * 11 9 8 13 13 H 1.08991 * 109.77722 * 141.88874 * 12 11 9 14 14 C 1.53006 * 109.98486 * 263.04661 * 12 11 9 15 15 N 1.47022 * 107.27524 * 22.52478 * 12 11 9 16 16 C 1.34780 * 125.64445 * 180.97088 * 15 12 11 17 17 O 1.21280 * 120.00423 * 359.71250 * 16 15 12 18 18 C 1.50701 * 119.99795 * 179.71926 * 16 15 12 19 19 S 1.81002 * 109.47156 * 179.97438 * 18 16 15 20 20 C 1.76193 * 100.00049 * 180.02562 * 19 18 16 21 21 H 1.08005 * 120.00026 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00056 * 180.02562 * 20 19 18 23 23 N 1.31623 * 119.99640 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.47315 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47332 * 119.99854 * 24 22 20 27 27 H 1.48499 * 109.47328 * 240.00154 * 24 22 20 28 28 C 1.47417 * 108.70718 * 0.70388 * 15 12 11 29 29 H 1.08998 * 109.47069 * 300.00523 * 1 2 3 30 30 H 1.09001 * 109.47113 * 59.99839 * 1 2 3 31 31 H 1.08992 * 109.47056 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47191 * 240.00018 * 2 1 3 33 33 H 1.08997 * 109.47033 * 119.99406 * 2 1 3 34 34 H 1.08998 * 109.47528 * 59.99758 * 3 2 1 35 35 H 1.09001 * 109.47211 * 300.00101 * 3 2 1 36 36 H 0.97009 * 119.99707 * 359.97438 * 4 3 2 37 37 H 1.08997 * 109.47182 * 60.00123 * 7 5 4 38 38 H 1.08994 * 109.47456 * 299.99868 * 7 5 4 39 39 H 1.00897 * 110.99637 * 303.95801 * 8 7 5 40 40 H 1.08999 * 110.71826 * 324.78650 * 11 9 8 41 41 H 1.09001 * 110.71871 * 87.88486 * 11 9 8 42 42 H 1.09000 * 109.46764 * 179.32670 * 14 12 11 43 43 H 1.08995 * 109.47173 * 299.33426 * 14 12 11 44 44 H 1.09005 * 109.47008 * 59.33627 * 14 12 11 45 45 H 1.09002 * 109.47060 * 299.99722 * 18 16 15 46 46 H 1.09001 * 109.47380 * 59.99809 * 18 16 15 47 47 H 0.97010 * 119.99946 * 180.02562 * 23 22 20 48 48 H 1.09003 * 110.36538 * 94.93107 * 28 15 12 49 49 H 1.08998 * 110.37116 * 217.14771 * 28 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1790 2.6097 -0.0002 6 8 3.5726 3.6600 0.0002 7 6 5.6859 2.6096 -0.0003 8 7 6.1756 3.9947 -0.0004 9 6 7.6440 4.0338 0.0002 10 1 8.0539 3.2359 0.6194 11 6 8.1632 5.4207 0.4634 12 6 9.5444 5.5156 -0.2183 13 1 9.7183 6.5363 -0.5588 14 6 10.6416 5.0974 0.7627 15 7 9.5272 4.6007 -1.3690 16 6 10.5547 4.3806 -2.2129 17 8 11.6048 4.9669 -2.0559 18 6 10.3989 3.4062 -3.3519 19 16 11.9404 3.3320 -4.2977 20 6 11.4879 2.1551 -5.5284 21 1 10.4981 1.7229 -5.5243 22 6 12.4039 1.7827 -6.5026 23 7 13.6102 2.3091 -6.5072 24 14 11.9244 0.5345 -7.8070 25 1 10.5232 0.0968 -7.5821 26 1 12.0401 1.1542 -9.1514 27 1 12.8287 -0.6405 -7.7240 28 6 8.2021 3.9590 -1.4430 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 3.9900 0.6024 -0.0006 37 1 6.0492 2.0962 -0.8904 38 1 6.0493 2.0955 0.8895 39 1 5.8000 4.5109 -0.7817 40 1 7.5026 6.2153 0.1165 41 1 8.2651 5.4517 1.5482 42 1 11.6117 5.1561 0.2693 43 1 10.6314 5.7641 1.6250 44 1 10.4631 4.0739 1.0926 45 1 10.1676 2.4176 -2.9552 46 1 9.5890 3.7349 -4.0032 47 1 14.2503 2.0491 -7.1883 48 1 7.5541 4.5046 -2.1290 49 1 8.3005 2.9208 -1.7601 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001283943202.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:19:16 Heat of formation + Delta-G solvation = -105.078063 kcal Electronic energy + Delta-G solvation = -27175.887473 eV Core-core repulsion = 23262.551074 eV Total energy + Delta-G solvation = -3913.336398 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.36738 -40.66269 -38.90479 -36.83840 -35.84516 -34.60315 -33.57407 -33.36745 -31.07611 -30.24056 -28.05162 -27.67953 -26.79259 -25.79552 -23.49952 -22.55103 -21.83583 -21.35434 -20.36300 -19.56550 -18.37142 -17.81739 -17.54579 -17.04448 -16.90797 -16.86932 -16.67742 -16.16488 -15.92977 -15.69751 -15.32419 -14.75329 -14.65841 -14.56782 -14.30060 -14.21043 -13.89275 -13.85110 -13.67285 -13.56290 -13.23954 -13.17657 -13.07024 -12.93379 -12.91367 -12.90437 -12.58528 -12.36076 -12.03657 -11.95760 -11.74899 -11.72609 -11.60663 -11.17433 -10.90409 -10.85767 -10.29383 -10.09134 -9.77244 -9.43566 -8.69504 -8.36281 -6.14881 1.22418 1.40563 1.43760 1.55569 1.56382 1.66525 1.99589 2.17458 2.25596 2.97934 3.07369 3.27523 3.51953 3.60725 3.83169 3.87811 3.96145 4.05322 4.07884 4.11041 4.21246 4.27811 4.35265 4.36038 4.41532 4.43750 4.49840 4.63772 4.67844 4.71450 4.75897 4.77699 4.86989 4.97629 5.04906 5.13968 5.15913 5.24740 5.32332 5.34730 5.39941 5.50133 5.51100 5.87555 6.18109 6.23293 6.39555 6.60116 7.04811 7.12825 7.29516 8.73183 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008481 B = 0.002357 C = 0.001878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3300.887315 B =11874.721260 C =14903.275158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.127 4.127 3 C 0.118 3.882 4 N -0.723 5.723 5 C 0.508 3.492 6 O -0.575 6.575 7 C 0.039 3.961 8 N -0.664 5.664 9 C 0.093 3.907 10 H 0.112 0.888 11 C -0.102 4.102 12 C 0.129 3.871 13 H 0.062 0.938 14 C -0.158 4.158 15 N -0.609 5.609 16 C 0.546 3.454 17 O -0.560 6.560 18 C -0.120 4.120 19 S -0.149 6.149 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.256 1.256 26 H -0.275 1.275 27 H -0.273 1.273 28 C 0.063 3.937 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.055 0.945 35 H 0.052 0.948 36 H 0.417 0.583 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.351 0.649 40 H 0.084 0.916 41 H 0.106 0.894 42 H 0.034 0.966 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.107 0.893 46 H 0.101 0.899 47 H 0.271 0.729 48 H 0.075 0.925 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.352 -5.538 17.760 31.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.165 4.165 3 C -0.006 4.006 4 N -0.376 5.376 5 C 0.295 3.705 6 O -0.454 6.454 7 C -0.093 4.093 8 N -0.295 5.295 9 C -0.018 4.018 10 H 0.130 0.870 11 C -0.140 4.140 12 C 0.026 3.974 13 H 0.080 0.920 14 C -0.215 4.215 15 N -0.344 5.344 16 C 0.334 3.666 17 O -0.438 6.438 18 C -0.271 4.271 19 S 0.078 5.922 20 C -0.692 4.692 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.547 5.547 24 Si 0.822 3.178 25 H -0.179 1.179 26 H -0.200 1.200 27 H -0.198 1.198 28 C -0.062 4.062 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.253 0.747 37 H 0.102 0.898 38 H 0.145 0.855 39 H 0.171 0.829 40 H 0.103 0.897 41 H 0.124 0.876 42 H 0.053 0.947 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.125 0.875 46 H 0.119 0.881 47 H 0.080 0.920 48 H 0.093 0.907 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.113 -3.856 18.563 30.674 hybrid contribution -0.535 -1.591 -2.178 2.750 sum -24.649 -5.447 16.385 30.095 Atomic orbital electron populations 1.21703 0.94473 1.02707 1.02135 1.21687 0.97029 0.94147 1.03664 1.21394 0.79470 0.98521 1.01226 1.45950 1.07564 1.08956 1.75151 1.21031 0.90924 0.83458 0.75080 1.90714 1.71158 1.32931 1.50589 1.21977 0.90174 0.91814 1.05317 1.60244 1.05690 1.12338 1.51226 1.22720 0.86616 0.99254 0.93201 0.86969 1.22641 0.92214 0.97256 1.01937 1.21743 0.97363 0.92878 0.85454 0.92013 1.22094 0.97986 1.02444 0.99023 1.48397 1.12833 1.44478 1.28738 1.19755 0.82596 0.82092 0.82178 1.90680 1.28626 1.50917 1.73560 1.23309 1.03771 1.01673 0.98333 1.85607 1.15747 1.57841 1.33027 1.23207 1.02635 1.28241 1.15158 0.89955 1.26154 0.94254 0.98852 0.99996 1.70192 1.06024 1.43332 1.35183 0.84886 0.78970 0.77127 0.76840 1.17914 1.20027 1.19821 1.23411 0.83440 0.98990 1.00340 0.92505 0.92730 0.91265 0.90491 0.90179 0.92684 0.92952 0.74653 0.89780 0.85517 0.82909 0.89718 0.87581 0.94690 0.89347 0.91776 0.87525 0.88091 0.91972 0.90661 0.89619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.91 71.98 0.71 -0.21 16 2 C -0.13 -0.72 6.05 30.59 0.19 -0.54 16 3 C 0.12 1.29 5.67 86.38 0.49 1.78 16 4 N -0.72 -7.11 5.56 -463.09 -2.57 -9.68 16 5 C 0.51 7.81 7.87 87.65 0.69 8.50 16 6 O -0.58 -14.43 16.20 -3.03 -0.05 -14.47 16 7 C 0.04 0.38 6.04 85.55 0.52 0.90 16 8 N -0.66 -9.08 6.00 -488.40 -2.93 -12.01 16 9 C 0.09 1.26 3.32 46.31 0.15 1.41 16 10 H 0.11 1.28 7.92 -2.39 -0.02 1.26 16 11 C -0.10 -1.52 6.19 31.78 0.20 -1.33 16 12 C 0.13 2.93 3.48 45.34 0.16 3.09 16 13 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 14 C -0.16 -3.63 9.07 71.98 0.65 -2.98 16 15 N -0.61 -16.60 3.08 -788.08 -2.43 -19.03 16 16 C 0.55 21.02 7.65 87.66 0.67 21.69 16 17 O -0.56 -26.63 14.77 -3.03 -0.04 -26.67 16 18 C -0.12 -4.85 5.16 71.24 0.37 -4.48 16 19 S -0.15 -8.36 20.57 -56.49 -1.16 -9.52 16 20 C -0.54 -30.99 9.50 67.96 0.65 -30.35 16 21 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.69 5.49 84.86 0.47 1.16 16 23 N -0.91 -55.90 13.22 21.65 0.29 -55.61 16 24 Si 1.00 43.20 29.55 68.60 2.03 45.23 16 25 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 C 0.06 1.15 6.28 86.86 0.55 1.70 16 29 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.42 1.45 8.47 -92.70 -0.79 0.67 16 37 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 38 H 0.13 0.73 8.09 -2.39 -0.02 0.71 16 39 H 0.35 5.49 8.01 -89.70 -0.72 4.77 16 40 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.11 1.26 7.84 -2.39 -0.02 1.24 16 42 H 0.03 1.10 6.75 -2.39 -0.02 1.08 16 43 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.06 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.11 3.86 7.84 -2.39 -0.02 3.84 16 46 H 0.10 3.78 8.14 -2.40 -0.02 3.76 16 47 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 48 H 0.08 1.32 7.80 -2.39 -0.02 1.31 16 49 H 0.09 1.45 7.47 -2.39 -0.02 1.43 16 Total: -1.00 -83.26 414.10 -0.98 -84.24 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -0.56 Total: 17.18 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: 6.45 Total: 0.35 kcal Atomic # 7 Polarization: -88.68 SS G_CDS: -7.64 Total: -96.33 kcal Atomic # 8 Polarization: -41.06 SS G_CDS: -0.09 Total: -41.15 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Atomic # 16 Polarization: -8.36 SS G_CDS: -1.16 Total: -9.52 kcal Total: -83.26 -0.98 -84.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283943202.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.835 kcal (2) G-P(sol) polarization free energy of solvation -83.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds