Wall clock time and date at job start Wed Apr 1 2020 02:18:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47237 * 2 1 4 4 N 1.46503 * 109.47209 * 179.97438 * 3 2 1 5 5 C 1.34773 * 120.00096 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00048 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99914 * 179.97438 * 5 4 3 8 8 N 1.46898 * 109.47330 * 180.02562 * 7 5 4 9 9 C 1.46904 * 111.00289 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47066 * 180.02562 * 9 8 7 11 11 H 1.09003 * 110.91985 * 51.09329 * 10 9 8 12 12 C 1.55152 * 111.00506 * 175.00188 * 10 9 8 13 13 C 1.54323 * 102.94507 * 153.57338 * 12 10 9 14 14 N 1.47019 * 107.27046 * 337.80871 * 13 12 10 15 15 C 1.34775 * 125.64724 * 178.90656 * 14 13 12 16 16 O 1.21284 * 120.00295 * 180.02562 * 15 14 13 17 17 C 1.50708 * 119.99957 * 0.02562 * 15 14 13 18 18 S 1.80998 * 109.47052 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00013 * 180.02562 * 18 17 15 20 20 H 1.07991 * 119.99794 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99771 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00311 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99653 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48508 * 109.47016 * 299.99635 * 23 21 19 26 26 H 1.48495 * 109.47483 * 59.99992 * 23 21 19 27 27 C 1.47419 * 108.70475 * 359.16380 * 14 13 12 28 28 H 1.08993 * 109.47427 * 300.00277 * 1 2 3 29 29 H 1.09000 * 109.46897 * 60.00252 * 1 2 3 30 30 H 1.09000 * 109.47564 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47032 * 239.99456 * 2 1 3 32 32 H 1.08999 * 109.46467 * 120.00063 * 2 1 3 33 33 H 1.09004 * 109.47554 * 59.99775 * 3 2 1 34 34 H 1.09000 * 109.46971 * 299.99703 * 3 2 1 35 35 H 0.97002 * 119.99578 * 0.02562 * 4 3 2 36 36 H 1.09003 * 109.47130 * 60.00683 * 7 5 4 37 37 H 1.09000 * 109.47480 * 300.00604 * 7 5 4 38 38 H 1.00901 * 110.99952 * 303.96190 * 8 7 5 39 39 H 1.08998 * 109.46994 * 60.00211 * 9 8 7 40 40 H 1.08996 * 109.46782 * 299.99832 * 9 8 7 41 41 H 1.09001 * 110.71860 * 35.21044 * 12 10 9 42 42 H 1.08999 * 110.71932 * 271.93917 * 12 10 9 43 43 H 1.08999 * 109.88038 * 218.38538 * 13 12 10 44 44 H 1.09008 * 110.00757 * 97.29760 * 13 12 10 45 45 H 1.09005 * 109.46512 * 60.00633 * 17 15 14 46 46 H 1.08991 * 109.47135 * 300.00153 * 17 15 14 47 47 H 0.97001 * 119.99662 * 359.97438 * 22 21 19 48 48 H 1.08999 * 110.36921 * 142.73978 * 27 14 13 49 49 H 1.08996 * 110.36854 * 265.06399 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1790 2.6096 0.0002 6 8 3.5726 3.6599 -0.0002 7 6 5.6859 2.6095 0.0014 8 7 6.1757 3.9944 0.0013 9 6 7.6442 4.0336 0.0019 10 6 8.1156 5.4892 0.0024 11 1 7.6268 6.0563 0.7946 12 6 9.6596 5.5737 0.1292 13 6 9.9892 6.9191 -0.5512 14 7 8.8707 7.2392 -1.4500 15 6 8.7675 8.3460 -2.2121 16 8 7.7952 8.5072 -2.9190 17 6 9.8602 9.3835 -2.1859 18 16 9.4320 10.7392 -3.3062 19 6 10.8397 11.7755 -3.0845 20 1 11.6276 11.4786 -2.4083 21 6 10.9357 12.9735 -3.7789 22 7 9.9750 13.3356 -4.6027 23 14 12.4284 14.0718 -3.5444 24 1 12.2897 15.2832 -4.3920 25 1 12.5273 14.4747 -2.1184 26 1 13.6545 13.3310 -3.9356 27 6 7.8778 6.1521 -1.3750 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 3.9900 0.6023 0.0006 36 1 6.0500 2.0950 -0.8879 37 1 6.0486 2.0963 0.8920 38 1 5.8008 4.5105 -0.7805 39 1 8.0214 3.5295 -0.8879 40 1 8.0207 3.5299 0.8921 41 1 10.1357 4.7476 -0.3991 42 1 9.9603 5.5874 1.1767 43 1 10.9115 6.8282 -1.1248 44 1 10.0960 7.7010 0.2008 45 1 10.7989 8.9306 -2.5052 46 1 9.9696 9.7706 -1.1729 47 1 9.2001 12.7650 -4.7247 48 1 6.8673 6.5565 -1.4324 49 1 8.0444 5.4303 -2.1746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317314339.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:18:00 Heat of formation + Delta-G solvation = -86.408789 kcal Electronic energy + Delta-G solvation = -26397.209072 eV Core-core repulsion = 22484.682234 eV Total energy + Delta-G solvation = -3912.526838 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.19505 -39.85042 -37.76113 -36.43070 -35.61700 -33.16916 -32.50494 -32.24398 -29.75811 -29.48046 -27.73899 -25.97600 -24.86197 -24.30876 -22.67424 -22.19006 -20.98089 -20.48300 -19.37022 -18.21297 -17.69690 -16.85014 -16.77997 -16.53979 -16.34962 -15.78645 -15.32517 -14.92167 -14.74565 -14.49316 -14.26063 -14.11554 -13.81183 -13.66116 -13.51008 -13.36708 -13.11257 -12.79025 -12.63752 -12.61223 -12.47545 -12.35275 -12.21981 -11.85998 -11.80890 -11.72828 -11.46896 -11.41691 -11.07485 -10.94504 -10.89830 -10.20136 -10.15707 -9.55382 -9.54117 -9.47703 -8.99228 -8.88585 -8.53610 -8.19540 -6.64801 -6.59938 -3.97641 2.27004 2.60226 2.83740 3.00365 3.34833 3.39520 3.49499 3.59819 3.73604 4.21413 4.23027 4.29109 4.33028 4.37790 4.38132 4.57899 4.65136 4.77111 4.82680 4.91021 5.01782 5.05072 5.05822 5.06045 5.13094 5.21863 5.24741 5.28908 5.39757 5.43240 5.44192 5.53484 5.54435 5.59362 5.63465 5.68252 5.77761 5.89518 5.95284 6.01096 6.04663 6.38522 6.43407 6.88317 7.05827 7.62850 7.83968 7.93823 8.49735 8.52327 9.29591 10.84009 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.024041 B = 0.001517 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.420766 B =18451.106842 C =19444.353429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.135 4.135 3 C 0.117 3.883 4 N -0.736 5.736 5 C 0.509 3.491 6 O -0.520 6.520 7 C 0.042 3.958 8 N -0.675 5.675 9 C 0.074 3.926 10 C -0.101 4.101 11 H 0.098 0.902 12 C -0.123 4.123 13 C 0.101 3.899 14 N -0.625 5.625 15 C 0.546 3.454 16 O -0.516 6.516 17 C -0.124 4.124 18 S -0.117 6.117 19 C -0.607 4.607 20 H 0.065 0.935 21 C 0.036 3.964 22 N -0.884 5.884 23 Si 1.084 2.916 24 H -0.278 1.278 25 H -0.285 1.285 26 H -0.285 1.285 27 C 0.110 3.890 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.399 0.601 36 H 0.060 0.940 37 H 0.102 0.898 38 H 0.355 0.645 39 H 0.036 0.964 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.084 0.916 43 H 0.069 0.931 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.091 0.909 47 H 0.278 0.722 48 H 0.080 0.920 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.231 -32.654 13.779 36.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.173 4.173 3 C -0.006 4.006 4 N -0.390 5.390 5 C 0.294 3.706 6 O -0.394 6.394 7 C -0.091 4.091 8 N -0.309 5.309 9 C -0.056 4.056 10 C -0.121 4.121 11 H 0.116 0.884 12 C -0.162 4.162 13 C -0.022 4.022 14 N -0.362 5.362 15 C 0.335 3.665 16 O -0.390 6.390 17 C -0.275 4.275 18 S 0.110 5.890 19 C -0.755 4.755 20 H 0.084 0.916 21 C -0.175 4.175 22 N -0.518 5.518 23 Si 0.910 3.090 24 H -0.203 1.203 25 H -0.211 1.211 26 H -0.212 1.212 27 C -0.014 4.014 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.233 0.767 36 H 0.078 0.922 37 H 0.120 0.880 38 H 0.175 0.825 39 H 0.054 0.946 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.110 0.890 47 H 0.090 0.910 48 H 0.098 0.902 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.527 -30.032 12.850 34.026 hybrid contribution 1.106 -2.423 0.556 2.721 sum -8.421 -32.455 13.405 36.110 Atomic orbital electron populations 1.21685 0.94430 1.02245 1.02512 1.21733 0.97154 0.95744 1.02672 1.21409 0.79378 0.97177 1.02647 1.46003 1.07475 1.08665 1.76885 1.20640 0.90061 0.83704 0.76176 1.90762 1.70003 1.31109 1.47505 1.21788 0.91873 0.92499 1.02943 1.60158 1.07771 1.11090 1.51844 1.21913 0.86846 0.95740 1.01059 1.22380 0.95780 0.95771 0.98157 0.88419 1.22647 0.95093 0.96889 1.01524 1.22004 0.90166 0.96954 0.93111 1.48441 1.22043 1.20825 1.44898 1.20002 0.87647 0.80491 0.78407 1.90713 1.32400 1.76309 1.39606 1.23287 0.99550 0.99086 1.05541 1.84832 1.31765 1.17274 1.55177 1.23694 1.07071 1.10008 1.34755 0.91645 1.26053 1.02868 0.95979 0.92596 1.70797 1.08690 1.39451 1.32857 0.83331 0.73532 0.75741 0.76386 1.20268 1.21132 1.21151 1.22192 0.94047 0.89084 0.96027 0.92255 0.92245 0.92120 0.91316 0.91312 0.91400 0.91422 0.76673 0.92199 0.87965 0.82519 0.94568 0.90183 0.90474 0.89691 0.91255 0.91166 0.89094 0.89034 0.90978 0.90172 0.92116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.51 9.91 37.16 0.37 -0.14 16 2 C -0.14 -0.44 6.05 -26.73 -0.16 -0.60 16 3 C 0.12 0.68 5.67 -4.04 -0.02 0.66 16 4 N -0.74 -4.04 5.56 -60.30 -0.33 -4.38 16 5 C 0.51 4.40 7.87 -10.99 -0.09 4.31 16 6 O -0.52 -7.10 16.20 5.56 0.09 -7.01 16 7 C 0.04 0.25 6.17 -4.98 -0.03 0.22 16 8 N -0.68 -5.77 6.13 -115.06 -0.70 -6.47 16 9 C 0.07 0.50 5.19 -3.82 -0.02 0.48 16 10 C -0.10 -0.89 3.24 -88.59 -0.29 -1.17 16 11 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 12 C -0.12 -0.92 6.42 -24.90 -0.16 -1.08 16 13 C 0.10 1.10 6.49 -3.07 -0.02 1.08 16 14 N -0.62 -9.38 3.33 -170.66 -0.57 -9.94 16 15 C 0.55 11.03 7.87 -10.98 -0.09 10.94 16 16 O -0.52 -12.47 16.12 5.55 0.09 -12.38 16 17 C -0.12 -2.64 5.35 36.01 0.19 -2.45 16 18 S -0.12 -3.25 19.60 -107.50 -2.11 -5.36 16 19 C -0.61 -17.84 9.50 30.94 0.29 -17.55 16 20 H 0.07 1.84 7.80 -52.49 -0.41 1.43 16 21 C 0.04 1.05 5.49 -17.43 -0.10 0.95 16 22 N -0.88 -27.94 13.67 55.49 0.76 -27.18 16 23 Si 1.08 25.24 29.92 -169.99 -5.09 20.15 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.29 -6.27 7.11 56.52 0.40 -5.86 16 27 C 0.11 1.35 5.84 -2.64 -0.02 1.34 16 28 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.06 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.40 0.92 8.47 -40.82 -0.35 0.57 16 36 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.35 3.57 7.93 -39.29 -0.31 3.26 16 39 H 0.04 0.22 7.96 -51.93 -0.41 -0.19 16 40 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.08 0.48 8.04 -51.93 -0.42 0.07 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.75 8.14 -51.92 -0.42 0.32 16 45 H 0.09 1.81 8.14 -51.91 -0.42 1.38 16 46 H 0.09 1.83 8.14 -51.92 -0.42 1.41 16 47 H 0.28 8.99 7.12 -40.82 -0.29 8.70 16 48 H 0.08 1.14 8.04 -51.93 -0.42 0.73 16 49 H 0.06 0.71 7.90 -51.93 -0.41 0.30 16 LS Contribution 416.43 15.07 6.28 6.28 Total: -1.00 -39.07 416.43 -10.29 -49.36 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -8.58 Total: -0.07 kcal Atomic # 6 Polarization: -2.87 SS G_CDS: -0.13 Total: -3.01 kcal Atomic # 7 Polarization: -47.12 SS G_CDS: -0.85 Total: -47.97 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: 0.18 Total: -19.38 kcal Atomic # 14 Polarization: 25.24 SS G_CDS: -5.09 Total: 20.15 kcal Atomic # 16 Polarization: -3.25 SS G_CDS: -2.11 Total: -5.36 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -39.07 -10.29 -49.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317314339.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.050 kcal (2) G-P(sol) polarization free energy of solvation -39.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds