Wall clock time and date at job start Wed Apr 1 2020 02:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47237 * 2 1 4 4 N 1.46503 * 109.47209 * 179.97438 * 3 2 1 5 5 C 1.34773 * 120.00096 * 179.97438 * 4 3 2 6 6 O 1.21280 * 120.00048 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.99914 * 179.97438 * 5 4 3 8 8 N 1.46898 * 109.47330 * 180.02562 * 7 5 4 9 9 C 1.46904 * 111.00289 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47066 * 180.02562 * 9 8 7 11 11 H 1.09003 * 110.91985 * 51.09329 * 10 9 8 12 12 C 1.55152 * 111.00506 * 175.00188 * 10 9 8 13 13 C 1.54323 * 102.94507 * 153.57338 * 12 10 9 14 14 N 1.47019 * 107.27046 * 337.80871 * 13 12 10 15 15 C 1.34775 * 125.64724 * 178.90656 * 14 13 12 16 16 O 1.21284 * 120.00295 * 180.02562 * 15 14 13 17 17 C 1.50708 * 119.99957 * 0.02562 * 15 14 13 18 18 S 1.80998 * 109.47052 * 180.02562 * 17 15 14 19 19 C 1.76199 * 100.00013 * 180.02562 * 18 17 15 20 20 H 1.07991 * 119.99794 * 0.02562 * 19 18 17 21 21 C 1.38798 * 119.99771 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00311 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99653 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47055 * 180.02562 * 23 21 19 25 25 H 1.48508 * 109.47016 * 299.99635 * 23 21 19 26 26 H 1.48495 * 109.47483 * 59.99992 * 23 21 19 27 27 C 1.47419 * 108.70475 * 359.16380 * 14 13 12 28 28 H 1.08993 * 109.47427 * 300.00277 * 1 2 3 29 29 H 1.09000 * 109.46897 * 60.00252 * 1 2 3 30 30 H 1.09000 * 109.47564 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47032 * 239.99456 * 2 1 3 32 32 H 1.08999 * 109.46467 * 120.00063 * 2 1 3 33 33 H 1.09004 * 109.47554 * 59.99775 * 3 2 1 34 34 H 1.09000 * 109.46971 * 299.99703 * 3 2 1 35 35 H 0.97002 * 119.99578 * 0.02562 * 4 3 2 36 36 H 1.09003 * 109.47130 * 60.00683 * 7 5 4 37 37 H 1.09000 * 109.47480 * 300.00604 * 7 5 4 38 38 H 1.00901 * 110.99952 * 303.96190 * 8 7 5 39 39 H 1.08998 * 109.46994 * 60.00211 * 9 8 7 40 40 H 1.08996 * 109.46782 * 299.99832 * 9 8 7 41 41 H 1.09001 * 110.71860 * 35.21044 * 12 10 9 42 42 H 1.08999 * 110.71932 * 271.93917 * 12 10 9 43 43 H 1.08999 * 109.88038 * 218.38538 * 13 12 10 44 44 H 1.09008 * 110.00757 * 97.29760 * 13 12 10 45 45 H 1.09005 * 109.46512 * 60.00633 * 17 15 14 46 46 H 1.08991 * 109.47135 * 300.00153 * 17 15 14 47 47 H 0.97001 * 119.99662 * 359.97438 * 22 21 19 48 48 H 1.08999 * 110.36921 * 142.73978 * 27 14 13 49 49 H 1.08996 * 110.36854 * 265.06399 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5051 1.4424 0.0006 5 6 4.1790 2.6096 0.0002 6 8 3.5726 3.6599 -0.0002 7 6 5.6859 2.6095 0.0014 8 7 6.1757 3.9944 0.0013 9 6 7.6442 4.0336 0.0019 10 6 8.1156 5.4892 0.0024 11 1 7.6268 6.0563 0.7946 12 6 9.6596 5.5737 0.1292 13 6 9.9892 6.9191 -0.5512 14 7 8.8707 7.2392 -1.4500 15 6 8.7675 8.3460 -2.2121 16 8 7.7952 8.5072 -2.9190 17 6 9.8602 9.3835 -2.1859 18 16 9.4320 10.7392 -3.3062 19 6 10.8397 11.7755 -3.0845 20 1 11.6276 11.4786 -2.4083 21 6 10.9357 12.9735 -3.7789 22 7 9.9750 13.3356 -4.6027 23 14 12.4284 14.0718 -3.5444 24 1 12.2897 15.2832 -4.3920 25 1 12.5273 14.4747 -2.1184 26 1 13.6545 13.3310 -3.9356 27 6 7.8778 6.1521 -1.3750 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6767 1.9564 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 3.9900 0.6023 0.0006 36 1 6.0500 2.0950 -0.8879 37 1 6.0486 2.0963 0.8920 38 1 5.8008 4.5105 -0.7805 39 1 8.0214 3.5295 -0.8879 40 1 8.0207 3.5299 0.8921 41 1 10.1357 4.7476 -0.3991 42 1 9.9603 5.5874 1.1767 43 1 10.9115 6.8282 -1.1248 44 1 10.0960 7.7010 0.2008 45 1 10.7989 8.9306 -2.5052 46 1 9.9696 9.7706 -1.1729 47 1 9.2001 12.7650 -4.7247 48 1 6.8673 6.5565 -1.4324 49 1 8.0444 5.4303 -2.1746 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317314339.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:17:59 Heat of formation + Delta-G solvation = -116.806015 kcal Electronic energy + Delta-G solvation = -26398.527195 eV Core-core repulsion = 22484.682234 eV Total energy + Delta-G solvation = -3913.844961 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.20150 -40.73543 -38.93800 -37.01542 -36.36456 -34.76304 -33.71249 -33.23978 -31.01240 -30.45667 -28.47803 -27.15861 -26.53458 -25.15615 -23.47261 -22.58334 -21.63020 -21.17512 -20.88508 -20.10931 -18.37633 -18.17322 -17.58922 -17.29616 -17.03296 -16.93158 -16.52073 -16.01085 -15.75394 -15.63871 -15.38722 -15.19496 -15.06975 -14.62189 -14.38843 -14.38060 -14.03776 -13.92495 -13.83521 -13.60694 -13.55068 -13.25592 -13.15673 -12.94662 -12.76140 -12.73898 -12.13450 -12.05413 -11.95347 -11.86150 -11.77657 -11.62783 -11.56748 -11.11228 -11.10612 -10.90627 -10.35377 -10.13498 -9.78729 -9.41355 -8.94358 -8.91257 -6.30417 1.12126 1.42337 1.51056 1.60656 1.63269 1.80839 1.98198 2.11146 2.33202 3.01198 3.05470 3.17328 3.44574 3.58529 3.77486 3.81432 3.90104 3.94501 4.04444 4.07616 4.23794 4.27396 4.31789 4.33054 4.38672 4.41667 4.48361 4.59655 4.63455 4.68554 4.74180 4.80603 4.84668 4.87911 4.94830 5.07877 5.12417 5.21837 5.26244 5.31991 5.37881 5.47204 5.62019 5.93925 6.12329 6.21136 6.29321 6.58693 6.98180 7.05083 7.28344 8.48931 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.024041 B = 0.001517 C = 0.001440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.420766 B =18451.106842 C =19444.353429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C 0.116 3.884 4 N -0.720 5.720 5 C 0.501 3.499 6 O -0.581 6.581 7 C 0.047 3.953 8 N -0.699 5.699 9 C 0.081 3.919 10 C -0.089 4.089 11 H 0.083 0.917 12 C -0.107 4.107 13 C 0.086 3.914 14 N -0.616 5.616 15 C 0.541 3.459 16 O -0.571 6.571 17 C -0.098 4.098 18 S -0.199 6.199 19 C -0.614 4.614 20 H 0.076 0.924 21 C -0.018 4.018 22 N -0.913 5.913 23 Si 1.138 2.862 24 H -0.280 1.280 25 H -0.263 1.263 26 H -0.261 1.261 27 C 0.104 3.896 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.418 0.582 36 H 0.086 0.914 37 H 0.130 0.870 38 H 0.340 0.660 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.110 0.890 46 H 0.107 0.893 47 H 0.259 0.741 48 H 0.050 0.950 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.334 -35.864 16.021 39.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.008 4.008 4 N -0.373 5.373 5 C 0.288 3.712 6 O -0.460 6.460 7 C -0.085 4.085 8 N -0.331 5.331 9 C -0.048 4.048 10 C -0.109 4.109 11 H 0.101 0.899 12 C -0.145 4.145 13 C -0.036 4.036 14 N -0.350 5.350 15 C 0.329 3.671 16 O -0.450 6.450 17 C -0.249 4.249 18 S 0.028 5.972 19 C -0.761 4.761 20 H 0.094 0.906 21 C -0.221 4.221 22 N -0.548 5.548 23 Si 0.955 3.045 24 H -0.205 1.205 25 H -0.187 1.187 26 H -0.186 1.186 27 C -0.019 4.019 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.256 0.744 36 H 0.104 0.896 37 H 0.148 0.852 38 H 0.158 0.842 39 H 0.069 0.931 40 H 0.124 0.876 41 H 0.118 0.882 42 H 0.130 0.870 43 H 0.099 0.901 44 H 0.093 0.907 45 H 0.128 0.872 46 H 0.126 0.874 47 H 0.070 0.930 48 H 0.069 0.931 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.598 -33.377 15.154 37.245 hybrid contribution 0.137 -1.595 -0.066 1.602 sum -6.461 -34.972 15.088 38.632 Atomic orbital electron populations 1.21713 0.94625 1.02784 1.02005 1.21668 0.96886 0.93781 1.03845 1.21401 0.79680 0.98781 1.00969 1.45902 1.07408 1.08864 1.75176 1.21274 0.91416 0.83419 0.75047 1.90740 1.71347 1.33342 1.50599 1.21882 0.89600 0.91672 1.05335 1.60182 1.08922 1.12543 1.51463 1.21931 0.85799 0.94164 1.02899 1.22308 0.97072 0.96740 0.94786 0.89858 1.22669 0.93510 0.95269 1.03035 1.22444 0.89036 0.99328 0.92803 1.48450 1.23736 1.19423 1.43404 1.19795 0.86661 0.81689 0.78970 1.90689 1.34158 1.77794 1.42361 1.23140 1.00677 0.96926 1.04173 1.85108 1.32986 1.20887 1.58212 1.24022 1.07153 1.10274 1.34650 0.90571 1.27895 1.04994 0.97798 0.91443 1.70920 1.09235 1.39673 1.34937 0.82715 0.70393 0.73869 0.77531 1.20493 1.18732 1.18589 1.22417 0.91959 0.88379 0.99117 0.92716 0.92920 0.90986 0.90179 0.89941 0.93063 0.93321 0.74435 0.89618 0.85209 0.84203 0.93116 0.87640 0.88182 0.86987 0.90083 0.90702 0.87183 0.87446 0.92976 0.93133 0.91045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.91 71.98 0.71 -0.22 16 2 C -0.12 -0.64 6.05 30.59 0.19 -0.45 16 3 C 0.12 1.36 5.67 86.38 0.49 1.85 16 4 N -0.72 -7.10 5.56 -463.07 -2.57 -9.67 16 5 C 0.50 8.42 7.87 87.66 0.69 9.11 16 6 O -0.58 -16.72 16.20 -3.03 -0.05 -16.77 16 7 C 0.05 0.45 6.17 85.56 0.53 0.98 16 8 N -0.70 -10.91 6.13 -517.94 -3.17 -14.08 16 9 C 0.08 0.81 5.19 86.30 0.45 1.26 16 10 C -0.09 -1.34 3.24 -9.48 -0.03 -1.37 16 11 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 12 C -0.11 -1.12 6.42 31.78 0.20 -0.92 16 13 C 0.09 1.60 6.49 86.73 0.56 2.17 16 14 N -0.62 -17.99 3.33 -812.22 -2.70 -20.69 16 15 C 0.54 22.21 7.87 87.66 0.69 22.90 16 16 O -0.57 -29.01 16.12 -3.04 -0.05 -29.06 16 17 C -0.10 -4.17 5.35 71.24 0.38 -3.79 16 18 S -0.20 -11.44 19.60 -56.49 -1.11 -12.55 16 19 C -0.61 -36.25 9.50 67.95 0.65 -35.60 16 20 H 0.08 4.19 7.80 -2.92 -0.02 4.17 16 21 C -0.02 -1.08 5.49 84.86 0.47 -0.62 16 22 N -0.91 -59.22 13.67 21.65 0.30 -58.92 16 23 Si 1.14 49.87 29.92 68.60 2.05 51.92 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 26 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 27 C 0.10 2.51 5.84 86.78 0.51 3.02 16 28 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.08 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.08 0.24 8.14 -2.39 -0.02 0.22 16 33 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.42 0.86 8.47 -92.71 -0.79 0.07 16 36 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.13 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.34 6.96 7.93 -89.69 -0.71 6.25 16 39 H 0.05 0.39 7.96 -2.39 -0.02 0.38 16 40 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.10 0.69 8.04 -2.39 -0.02 0.67 16 42 H 0.11 0.69 8.14 -2.39 -0.02 0.68 16 43 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.11 4.24 8.14 -2.39 -0.02 4.22 16 46 H 0.11 4.20 8.14 -2.40 -0.02 4.18 16 47 H 0.26 17.59 7.12 -92.71 -0.66 16.93 16 48 H 0.05 1.53 8.04 -2.39 -0.02 1.51 16 49 H 0.07 1.59 7.90 -2.39 -0.02 1.57 16 Total: -1.00 -91.92 416.43 -1.27 -93.19 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -0.45 Total: 18.31 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 6.48 Total: -1.68 kcal Atomic # 7 Polarization: -95.21 SS G_CDS: -8.15 Total: -103.36 kcal Atomic # 8 Polarization: -45.73 SS G_CDS: -0.10 Total: -45.83 kcal Atomic # 14 Polarization: 49.87 SS G_CDS: 2.05 Total: 51.92 kcal Atomic # 16 Polarization: -11.44 SS G_CDS: -1.11 Total: -12.55 kcal Total: -91.92 -1.27 -93.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317314339.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.616 kcal (2) G-P(sol) polarization free energy of solvation -91.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds