Wall clock time and date at job start Wed Apr 1 2020 01:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.46750 * 2 1 4 4 N 1.46897 * 109.47119 * 185.62947 * 3 2 1 5 5 C 1.47901 * 110.99905 * 65.15280 * 4 3 2 6 6 C 1.53997 * 107.06084 * 214.15656 * 5 4 3 7 7 C 1.54599 * 105.13556 * 1.22696 * 6 5 4 8 8 C 1.48540 * 110.99989 * 307.76126 * 4 3 2 9 9 H 1.09001 * 110.66331 * 41.28183 * 8 4 3 10 10 C 1.50699 * 110.66482 * 278.15301 * 8 4 3 11 11 O 1.21284 * 120.00040 * 0.02562 * 10 8 4 12 12 N 1.34774 * 119.99896 * 179.97438 * 10 8 4 13 13 C 1.46504 * 119.99966 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47126 * 180.02562 * 13 12 10 15 15 N 1.46491 * 109.47246 * 180.02562 * 14 13 12 16 16 C 1.34774 * 120.00245 * 180.02562 * 15 14 13 17 17 O 1.21282 * 120.00173 * 359.97438 * 16 15 14 18 18 C 1.50696 * 120.00129 * 180.02562 * 16 15 14 19 19 S 1.81004 * 109.47436 * 179.97438 * 18 16 15 20 20 C 1.76190 * 100.00465 * 179.97438 * 19 18 16 21 21 H 1.08009 * 120.00017 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00422 * 180.02562 * 20 19 18 23 23 N 1.31630 * 119.99748 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00395 * 179.97438 * 22 20 19 25 25 H 1.48507 * 109.46896 * 89.99883 * 24 22 20 26 26 H 1.48491 * 109.47085 * 210.00062 * 24 22 20 27 27 H 1.48499 * 109.46903 * 330.00317 * 24 22 20 28 28 H 1.09008 * 109.47223 * 60.00123 * 1 2 3 29 29 H 1.09002 * 109.47182 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47544 * 300.00044 * 1 2 3 31 31 H 1.08993 * 109.47279 * 240.00376 * 2 1 3 32 32 H 1.09000 * 109.47082 * 119.99696 * 2 1 3 33 33 H 1.09000 * 109.47280 * 65.63271 * 3 2 1 34 34 H 1.08997 * 109.47087 * 305.62655 * 3 2 1 35 35 H 1.08996 * 109.91953 * 333.51248 * 5 4 3 36 36 H 1.08996 * 109.91639 * 94.80694 * 5 4 3 37 37 H 1.08996 * 110.30828 * 120.14081 * 6 5 4 38 38 H 1.09000 * 110.31171 * 242.31152 * 6 5 4 39 39 H 1.09007 * 110.72092 * 140.31347 * 7 6 5 40 40 H 1.08998 * 110.72773 * 263.59445 * 7 6 5 41 41 H 0.97002 * 120.00227 * 0.02562 * 12 10 8 42 42 H 1.09000 * 109.46994 * 300.00472 * 13 12 10 43 43 H 1.09000 * 109.46444 * 60.00662 * 13 12 10 44 44 H 1.09001 * 109.47110 * 300.00455 * 14 13 12 45 45 H 1.09001 * 109.47163 * 59.99969 * 14 13 12 46 46 H 0.97008 * 120.00130 * 0.02562 * 15 14 13 47 47 H 1.09001 * 109.47088 * 299.99814 * 18 16 15 48 48 H 1.08996 * 109.47723 * 59.99970 * 18 16 15 49 49 H 0.96999 * 120.00400 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5026 1.4449 -0.1359 5 6 3.9136 0.9068 -1.4508 6 6 5.2395 0.1536 -1.2363 7 6 5.5314 0.2732 0.2772 8 6 4.1328 0.5612 0.8782 9 1 3.5645 -0.3622 0.9901 10 6 4.2583 1.2737 2.2001 11 8 3.8652 2.4154 2.3134 12 7 4.8066 0.6418 3.2568 13 6 4.9292 1.3346 4.5418 14 6 5.5803 0.4012 5.5644 15 7 5.7023 1.0938 6.8495 16 6 6.2514 0.4622 7.9059 17 8 6.6441 -0.6797 7.7929 18 6 6.3764 1.1745 9.2281 19 16 7.1469 0.0704 10.4378 20 6 7.1694 1.1281 11.8468 21 1 6.7744 2.1309 11.7756 22 6 7.6955 0.6731 13.0479 23 7 8.1773 -0.5488 13.1345 24 14 7.7200 1.7947 14.5415 25 1 6.4626 1.6202 15.3122 26 1 8.8799 1.4485 15.4016 27 1 7.8367 3.2071 14.0980 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.7612 1.9265 0.9361 34 1 1.5966 1.9846 -0.8353 35 1 3.1535 0.2213 -1.8255 36 1 4.0608 1.7240 -2.1568 37 1 5.1299 -0.8933 -1.5189 38 1 6.0376 0.6205 -1.8135 39 1 5.9338 -0.6617 0.6674 40 1 6.2137 1.1000 0.4744 41 1 5.1207 -0.2715 3.1663 42 1 5.5466 2.2242 4.4175 43 1 3.9393 1.6255 4.8935 44 1 4.9632 -0.4886 5.6888 45 1 6.5701 0.1106 5.2125 46 1 5.3879 2.0070 6.9401 47 1 6.9927 2.0650 9.1042 48 1 5.3863 1.4640 9.5799 49 1 8.5453 -0.8668 13.9738 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574893569.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:47:24 Heat of formation + Delta-G solvation = -101.680194 kcal Electronic energy + Delta-G solvation = -26799.585480 eV Core-core repulsion = 22886.396424 eV Total energy + Delta-G solvation = -3913.189056 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.43140 -40.63542 -39.35789 -36.90066 -35.40392 -34.94669 -34.57792 -31.92718 -31.57844 -30.65347 -28.79453 -27.63056 -26.37192 -24.49920 -23.51800 -22.60396 -21.97054 -21.60729 -20.61735 -19.85089 -18.32440 -17.94892 -17.40211 -17.06957 -17.02425 -16.87109 -16.63777 -16.38059 -16.06308 -15.72084 -15.45478 -15.19750 -14.92132 -14.71145 -14.48615 -14.40730 -14.29129 -13.84939 -13.69249 -13.16113 -13.12723 -12.92944 -12.89011 -12.85470 -12.64497 -12.60183 -12.47630 -12.44883 -12.34786 -12.05223 -11.75317 -11.73196 -11.28589 -11.13929 -11.08233 -10.80166 -10.27728 -10.24621 -10.12454 -9.27903 -8.65917 -8.34469 -6.12166 1.24875 1.42786 1.45016 1.55841 1.58496 1.61319 1.84117 2.27535 2.48904 2.99836 3.10066 3.32627 3.54875 3.58630 3.64030 3.89186 3.98521 4.00162 4.00679 4.02999 4.08569 4.25911 4.31290 4.35266 4.38401 4.51905 4.52828 4.57535 4.64585 4.81376 4.85685 4.86223 4.91350 4.93487 5.01922 5.07476 5.15156 5.15944 5.26449 5.29513 5.35965 5.40571 5.42680 5.82788 6.04940 6.20278 6.42485 6.52446 7.07191 7.19019 7.24073 8.74665 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.026508 B = 0.001497 C = 0.001472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.024475 B =18700.199892 C =19015.716940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.159 4.159 3 C 0.048 3.952 4 N -0.517 5.517 5 C 0.029 3.971 6 C -0.125 4.125 7 C -0.112 4.112 8 C 0.040 3.960 9 H 0.105 0.895 10 C 0.522 3.478 11 O -0.564 6.564 12 N -0.718 5.718 13 C 0.122 3.878 14 C 0.117 3.883 15 N -0.713 5.713 16 C 0.538 3.462 17 O -0.562 6.562 18 C -0.132 4.132 19 S -0.149 6.149 20 C -0.548 4.548 21 H 0.083 0.917 22 C 0.014 3.986 23 N -0.910 5.910 24 Si 0.998 3.002 25 H -0.268 1.268 26 H -0.278 1.278 27 H -0.259 1.259 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.048 0.952 31 H 0.077 0.923 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.080 0.920 39 H 0.104 0.896 40 H 0.064 0.936 41 H 0.416 0.584 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.418 0.582 47 H 0.111 0.889 48 H 0.111 0.889 49 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.853 1.921 -32.566 34.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.197 4.197 3 C -0.080 4.080 4 N -0.241 5.241 5 C -0.098 4.098 6 C -0.163 4.163 7 C -0.150 4.150 8 C -0.072 4.072 9 H 0.122 0.878 10 C 0.309 3.691 11 O -0.441 6.441 12 N -0.372 5.372 13 C -0.003 4.003 14 C -0.008 4.008 15 N -0.368 5.368 16 C 0.324 3.676 17 O -0.439 6.439 18 C -0.283 4.283 19 S 0.078 5.922 20 C -0.696 4.696 21 H 0.101 0.899 22 C -0.191 4.191 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.193 1.193 26 H -0.203 1.203 27 H -0.183 1.183 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.123 0.877 40 H 0.083 0.917 41 H 0.253 0.747 42 H 0.091 0.909 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.092 0.908 46 H 0.255 0.745 47 H 0.129 0.871 48 H 0.129 0.871 49 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.247 1.293 -32.546 34.458 hybrid contribution -0.661 1.033 1.228 1.735 sum -11.908 2.326 -31.318 33.586 Atomic orbital electron populations 1.21671 0.94700 1.02202 1.01962 1.22178 0.97444 0.97716 1.02383 1.22310 0.86979 0.96342 1.02379 1.64580 1.08621 1.48427 1.02438 1.23012 0.97283 0.98764 0.90773 1.22402 0.96975 1.01562 0.95380 1.22512 0.93347 1.03153 0.95998 1.22891 0.98860 0.95489 0.89938 0.87770 1.20776 0.76373 0.86369 0.85601 1.90697 1.49236 1.19554 1.84647 1.45677 1.63260 1.18528 1.09726 1.21239 1.01361 0.95143 0.82524 1.21376 1.01696 0.95514 0.82176 1.45528 1.63103 1.18535 1.09588 1.19987 0.76451 0.85982 0.85216 1.90697 1.49251 1.19462 1.84533 1.23383 1.06098 1.03414 0.95402 1.85526 1.79303 1.22041 1.05282 1.23218 1.47255 1.01986 0.97108 0.89926 1.26105 0.93795 0.97166 1.01989 1.70174 1.38788 1.18013 1.27713 0.84967 0.78152 0.78290 0.76656 1.19342 1.20290 1.18292 0.92074 0.91960 0.93318 0.90435 0.92009 0.92456 0.90146 0.91730 0.90354 0.89233 0.90145 0.87734 0.91701 0.74710 0.90885 0.90872 0.90836 0.90769 0.74516 0.87113 0.87100 0.91984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.68 16 2 C -0.16 -1.59 5.07 30.60 0.16 -1.43 16 3 C 0.05 0.70 5.22 86.31 0.45 1.16 16 4 N -0.52 -8.00 4.82 -862.57 -4.16 -12.15 16 5 C 0.03 0.29 6.46 86.45 0.56 0.84 16 6 C -0.13 -0.86 6.93 31.48 0.22 -0.64 16 7 C -0.11 -1.00 6.49 31.80 0.21 -0.80 16 8 C 0.04 0.51 2.48 44.51 0.11 0.62 16 9 H 0.11 0.97 5.50 -2.39 -0.01 0.96 16 10 C 0.52 9.69 7.06 87.66 0.62 10.31 16 11 O -0.56 -15.70 15.82 -3.04 -0.05 -15.75 16 12 N -0.72 -9.87 5.55 -463.05 -2.57 -12.44 16 13 C 0.12 1.92 5.79 86.38 0.50 2.42 16 14 C 0.12 2.17 5.79 86.38 0.50 2.67 16 15 N -0.71 -16.39 5.56 -463.08 -2.57 -18.97 16 16 C 0.54 18.78 7.85 87.66 0.69 19.47 16 17 O -0.56 -24.69 15.86 -3.03 -0.05 -24.74 16 18 C -0.13 -5.06 6.16 71.23 0.44 -4.62 16 19 S -0.15 -8.13 20.57 -56.49 -1.16 -9.29 16 20 C -0.55 -31.04 9.50 67.95 0.65 -30.40 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.81 5.49 84.86 0.47 1.28 16 23 N -0.91 -55.53 13.22 21.65 0.29 -55.24 16 24 Si 1.00 43.38 29.55 68.60 2.03 45.41 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 28 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.08 0.61 6.11 -2.39 -0.01 0.59 16 32 H 0.06 0.65 6.27 -2.39 -0.01 0.63 16 33 H 0.06 1.14 7.54 -2.39 -0.02 1.12 16 34 H 0.08 1.08 8.13 -2.39 -0.02 1.06 16 35 H 0.06 0.48 5.79 -2.39 -0.01 0.46 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.10 0.44 8.14 -2.38 -0.02 0.42 16 40 H 0.06 0.81 8.05 -2.39 -0.02 0.79 16 41 H 0.42 3.43 8.47 -92.71 -0.79 2.65 16 42 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 43 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.42 7.06 8.47 -92.70 -0.79 6.28 16 47 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 48 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 49 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 Total: -1.00 -82.04 408.78 -2.58 -84.62 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: -0.61 Total: 18.36 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: 6.27 Total: 0.19 kcal Atomic # 7 Polarization: -89.79 SS G_CDS: -9.01 Total: -98.80 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.10 Total: -40.49 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: -8.13 SS G_CDS: -1.16 Total: -9.29 kcal Total: -82.04 -2.58 -84.62 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574893569.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.060 kcal (2) G-P(sol) polarization free energy of solvation -82.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds