Wall clock time and date at job start Wed Apr 1 2020 02:50:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.46877 * 2 1 4 4 N 1.27939 * 120.00376 * 95.00126 * 3 2 1 5 5 Si 1.86803 * 119.99956 * 274.99749 * 3 2 1 6 6 H 1.48503 * 109.47006 * 0.02562 * 5 3 2 7 7 H 1.48505 * 109.46869 * 120.00300 * 5 3 2 8 8 H 1.48498 * 109.47509 * 240.00369 * 5 3 2 9 9 C 1.50696 * 109.47229 * 119.99690 * 2 1 3 10 10 O 1.21286 * 120.00088 * 338.11517 * 9 2 1 11 11 N 1.34775 * 119.99961 * 158.11355 * 9 2 1 12 12 C 1.47004 * 121.37627 * 354.96941 * 11 9 2 13 13 C 1.50318 * 109.16633 * 222.96954 * 12 11 9 14 14 C 1.29452 * 123.65712 * 349.02241 * 13 12 11 15 15 C 1.50700 * 117.70071 * 180.85504 * 14 13 12 16 16 N 1.46500 * 109.46632 * 95.00004 * 15 14 13 17 17 C 1.34778 * 119.99397 * 180.02562 * 16 15 14 18 18 O 1.21778 * 120.00482 * 0.02562 * 17 16 15 19 19 C 1.41526 * 119.99624 * 179.97438 * 17 16 15 20 20 C 1.35618 * 119.99684 * 188.43371 * 19 17 16 21 21 C 1.41666 * 120.00318 * 32.33980 * 20 19 17 22 22 C 1.38282 * 126.26102 * 187.08006 * 21 20 19 23 23 C 1.39792 * 107.07668 * 180.02562 * 22 21 20 24 24 C 1.35508 * 107.90908 * 359.74237 * 23 22 21 25 25 N 1.35742 * 108.91172 * 0.42513 * 24 23 22 26 26 H 0.97004 * 125.69792 * 179.83468 * 25 24 23 27 27 C 1.49974 * 124.60587 * 1.14365 * 14 13 12 28 28 C 1.47345 * 121.37602 * 174.99591 * 11 9 2 29 29 H 1.09001 * 109.47363 * 185.00118 * 1 2 3 30 30 H 1.09003 * 109.47128 * 305.00004 * 1 2 3 31 31 H 1.09005 * 109.47253 * 64.99917 * 1 2 3 32 32 H 1.09001 * 109.47254 * 240.00101 * 2 1 3 33 33 H 0.97005 * 120.00756 * 179.97438 * 4 3 2 34 34 H 1.09002 * 109.52093 * 103.06095 * 12 11 9 35 35 H 1.09004 * 109.52237 * 342.87685 * 12 11 9 36 36 H 1.08004 * 118.17452 * 169.00147 * 13 12 11 37 37 H 1.08999 * 109.46723 * 335.00409 * 15 14 13 38 38 H 1.08996 * 109.47338 * 215.00442 * 15 14 13 39 39 H 0.97000 * 120.00655 * 0.02562 * 16 15 14 40 40 H 1.07994 * 119.99649 * 8.43915 * 19 17 16 41 41 H 1.08001 * 119.99747 * 212.33477 * 20 19 17 42 42 H 1.07995 * 126.46124 * 0.03854 * 22 21 20 43 43 H 1.08004 * 126.04396 * 179.97438 * 23 22 21 44 44 H 1.07999 * 125.53955 * 180.26035 * 24 23 22 45 45 H 1.08995 * 109.32090 * 101.00678 * 27 14 13 46 46 H 1.09005 * 109.30825 * 220.43456 * 27 14 13 47 47 H 1.08995 * 109.77818 * 237.79069 * 28 11 9 48 48 H 1.09000 * 109.77538 * 358.59165 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.3366 1.9918 1.1037 5 14 2.2107 2.3484 -1.6116 6 1 1.7957 1.4715 -2.7360 7 1 1.3500 3.5583 -1.5843 8 1 3.6276 2.7530 -1.7957 9 6 2.0323 -0.7103 1.2305 10 8 1.3156 -0.8195 2.2028 11 7 3.2781 -1.2243 1.2505 12 6 4.1328 -1.2062 0.0546 13 6 4.8247 -2.5341 -0.0776 14 6 4.8294 -3.4362 0.8508 15 6 5.5831 -4.7134 0.5828 16 7 6.9334 -4.6099 1.1416 17 6 7.7935 -5.6404 1.0206 18 8 7.4484 -6.6574 0.4464 19 6 9.0981 -5.5403 1.5599 20 6 10.0177 -6.5007 1.2931 21 6 9.9944 -7.1776 0.0488 22 6 10.7741 -8.2630 -0.3065 23 6 10.4261 -8.6073 -1.6159 24 6 9.4592 -7.7523 -2.0286 25 7 9.1917 -6.8746 -1.0283 26 1 8.5408 -6.1563 -1.0645 27 6 4.1324 -3.3024 2.1720 28 6 3.8393 -1.8280 2.4718 29 1 -0.3634 -1.0237 0.0896 30 1 -0.3633 0.5895 0.8418 31 1 -0.3634 0.4343 -0.9314 32 1 1.8933 -0.5138 -0.8900 33 1 2.6602 2.9063 1.1038 34 1 4.8770 -0.4156 0.1507 35 1 3.5199 -1.0253 -0.8285 36 1 5.3468 -2.7476 -0.9986 37 1 5.6467 -4.8788 -0.4927 38 1 5.0601 -5.5485 1.0485 39 1 7.2084 -3.7997 1.5987 40 1 9.3612 -4.6991 2.1840 41 1 10.7678 -6.7495 2.0292 42 1 11.5124 -8.7525 0.3111 43 1 10.8500 -9.4145 -2.1948 44 1 8.9812 -7.7653 -2.9970 45 1 3.1971 -3.8614 2.1445 46 1 4.7690 -3.7086 2.9581 47 1 4.7598 -1.3137 2.7479 48 1 3.1170 -1.7548 3.2848 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001681335946.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:50:56 Heat of formation + Delta-G solvation = 60.128802 kcal Electronic energy + Delta-G solvation = -29572.537972 eV Core-core repulsion = 25517.265790 eV Total energy + Delta-G solvation = -4055.272182 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.176 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.26293 -41.47931 -40.62274 -39.02398 -37.08735 -36.28765 -34.70692 -33.86171 -33.25554 -32.07702 -31.85749 -29.78671 -28.38264 -26.30883 -25.47497 -24.58974 -23.86549 -22.31510 -21.89181 -21.27881 -20.81363 -20.25592 -19.25644 -19.03766 -17.83466 -17.62059 -17.51601 -17.01212 -16.61948 -16.44089 -16.14001 -15.50725 -15.31559 -15.19669 -15.05192 -14.97074 -14.82263 -14.59580 -14.48708 -14.32628 -14.28165 -14.03356 -13.80887 -13.67646 -13.24837 -13.18306 -13.14575 -12.94267 -12.86401 -12.74631 -12.59724 -12.24838 -12.11685 -11.80633 -11.48660 -11.20705 -10.90517 -10.76133 -10.18296 -10.04817 -9.87761 -9.75739 -9.69406 -8.48194 -0.46390 0.75679 0.92512 1.01423 1.50560 1.63503 1.69121 1.74411 1.89254 1.99601 1.99899 2.39906 2.45567 2.64182 3.31546 3.43580 3.62793 3.75223 3.91932 3.98550 4.05859 4.09893 4.12642 4.22744 4.29820 4.33546 4.41642 4.45759 4.49291 4.52849 4.58654 4.64993 4.67532 4.70821 4.77074 4.84566 4.89671 4.94988 4.98192 5.03628 5.11045 5.28437 5.33700 5.37080 5.38323 5.41508 5.44165 5.78150 6.00326 6.16472 6.39561 6.54828 6.66143 6.84843 7.18761 7.21718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.089 4.089 3 C -0.005 4.005 4 N -0.654 5.654 5 Si 0.980 3.020 6 H -0.208 1.208 7 H -0.260 1.260 8 H -0.241 1.241 9 C 0.535 3.465 10 O -0.581 6.581 11 N -0.616 5.616 12 C 0.126 3.874 13 C -0.132 4.132 14 C -0.135 4.135 15 C 0.159 3.841 16 N -0.710 5.710 17 C 0.540 3.460 18 O -0.593 6.593 19 C -0.301 4.301 20 C 0.051 3.949 21 C -0.023 4.023 22 C -0.156 4.156 23 C -0.235 4.235 24 C 0.013 3.987 25 N -0.516 5.516 26 H 0.417 0.583 27 C -0.091 4.091 28 C 0.114 3.886 29 H 0.063 0.937 30 H 0.043 0.957 31 H 0.097 0.903 32 H 0.148 0.852 33 H 0.347 0.653 34 H 0.098 0.902 35 H 0.121 0.879 36 H 0.143 0.857 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.414 0.586 40 H 0.163 0.837 41 H 0.174 0.826 42 H 0.157 0.843 43 H 0.150 0.850 44 H 0.187 0.813 45 H 0.065 0.935 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.031 4.615 -6.003 8.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.110 4.110 3 C -0.251 4.251 4 N -0.268 5.268 5 Si 0.793 3.207 6 H -0.129 1.129 7 H -0.184 1.184 8 H -0.164 1.164 9 C 0.324 3.676 10 O -0.460 6.460 11 N -0.349 5.349 12 C 0.005 3.995 13 C -0.152 4.152 14 C -0.136 4.136 15 C 0.036 3.964 16 N -0.361 5.361 17 C 0.334 3.666 18 O -0.478 6.478 19 C -0.322 4.322 20 C 0.031 3.969 21 C -0.134 4.134 22 C -0.181 4.181 23 C -0.259 4.259 24 C -0.125 4.125 25 N -0.112 5.112 26 H 0.259 0.741 27 C -0.128 4.128 28 C -0.008 4.008 29 H 0.082 0.918 30 H 0.062 0.938 31 H 0.116 0.884 32 H 0.165 0.835 33 H 0.165 0.835 34 H 0.116 0.884 35 H 0.138 0.862 36 H 0.161 0.839 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.250 0.750 40 H 0.181 0.819 41 H 0.191 0.809 42 H 0.175 0.825 43 H 0.168 0.832 44 H 0.204 0.796 45 H 0.083 0.917 46 H 0.108 0.892 47 H 0.103 0.897 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.324 4.185 -5.610 7.748 hybrid contribution -0.311 0.864 0.549 1.070 sum 3.012 5.049 -5.061 7.757 Atomic orbital electron populations 1.21586 0.90928 1.03136 1.03255 1.21003 0.99003 0.93209 0.97823 1.30604 0.92495 0.98070 1.03967 1.68246 1.08840 1.16933 1.32804 0.85054 0.81856 0.79463 0.74330 1.12864 1.18412 1.16371 1.20721 0.80544 0.76860 0.89489 1.90666 1.56867 1.59957 1.38504 1.48233 1.14371 1.59342 1.12964 1.20970 0.94424 0.96175 0.87949 1.22556 0.98889 0.94260 0.99478 1.20571 1.00464 0.95726 0.96799 1.20269 0.81878 0.95516 0.98786 1.45962 1.13304 1.18017 1.58851 1.17562 0.87269 0.82882 0.78884 1.90869 1.80234 1.31038 1.45633 1.21984 0.93473 1.03948 1.12844 1.21247 0.96739 0.87989 0.90937 1.18700 1.00127 1.03531 0.90999 1.21899 1.02225 0.96772 0.97230 1.21180 1.03006 1.04148 0.97525 1.22600 1.01146 0.93226 0.95541 1.42680 1.30456 1.26544 1.11472 0.74107 1.20658 1.00294 0.96183 0.95699 1.21628 0.99074 0.92688 0.87447 0.91761 0.93779 0.88441 0.83480 0.83472 0.88417 0.86151 0.83919 0.90936 0.92776 0.74961 0.81909 0.80902 0.82537 0.83238 0.79622 0.91691 0.89185 0.89686 0.91211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 0.10 8.50 71.98 0.61 0.71 16 2 C -0.09 0.19 1.95 -12.29 -0.02 0.17 16 3 C 0.00 0.01 4.81 88.68 0.43 0.44 16 4 N -0.65 -1.40 12.91 24.11 0.31 -1.09 16 5 Si 0.98 -7.96 29.40 68.60 2.02 -5.94 16 6 H -0.21 2.28 7.11 99.48 0.71 2.99 16 7 H -0.26 1.13 7.11 99.48 0.71 1.83 16 8 H -0.24 1.83 7.11 99.48 0.71 2.54 16 9 C 0.53 2.92 6.15 87.66 0.54 3.46 16 10 O -0.58 -9.12 15.66 -3.05 -0.05 -9.17 16 11 N -0.62 -0.08 2.97 -822.84 -2.44 -2.52 16 12 C 0.13 -1.01 6.43 85.42 0.55 -0.46 16 13 C -0.13 1.08 9.47 27.11 0.26 1.34 16 14 C -0.13 0.67 5.22 -15.13 -0.08 0.59 16 15 C 0.16 -0.38 5.66 85.63 0.48 0.10 16 16 N -0.71 2.39 5.54 -475.96 -2.64 -0.25 16 17 C 0.54 1.28 6.32 85.05 0.54 1.82 16 18 O -0.59 -6.10 12.73 -4.60 -0.06 -6.16 16 19 C -0.30 0.42 9.72 22.47 0.22 0.63 16 20 C 0.05 0.01 9.76 22.51 0.22 0.23 16 21 C -0.02 -0.12 5.95 39.08 0.23 0.11 16 22 C -0.16 -0.80 10.86 22.66 0.25 -0.55 16 23 C -0.23 -1.19 10.81 22.01 0.24 -0.95 16 24 C 0.01 0.05 11.90 83.46 0.99 1.05 16 25 N -0.52 -2.80 4.51 -187.33 -0.84 -3.64 16 26 H 0.42 1.80 6.13 -92.71 -0.57 1.23 16 27 C -0.09 0.18 5.95 29.72 0.18 0.36 16 28 C 0.11 0.07 6.51 86.31 0.56 0.63 16 29 H 0.06 0.03 8.14 -2.39 -0.02 0.01 16 30 H 0.04 0.23 8.05 -2.39 -0.02 0.21 16 31 H 0.10 -0.70 8.07 -2.38 -0.02 -0.72 16 32 H 0.15 -1.57 5.87 -2.39 -0.01 -1.58 16 33 H 0.35 -0.58 8.23 -92.70 -0.76 -1.34 16 34 H 0.10 -1.00 8.14 -2.39 -0.02 -1.02 16 35 H 0.12 -1.56 5.70 -2.38 -0.01 -1.57 16 36 H 0.14 -1.66 7.73 -2.91 -0.02 -1.68 16 37 H 0.07 -0.16 7.78 -2.39 -0.02 -0.18 16 38 H 0.05 0.12 8.11 -2.39 -0.02 0.10 16 39 H 0.41 -3.32 8.42 -92.71 -0.78 -4.10 16 40 H 0.16 -1.25 8.06 -2.91 -0.02 -1.27 16 41 H 0.17 -1.05 8.06 -2.91 -0.02 -1.08 16 42 H 0.16 0.10 8.06 -2.91 -0.02 0.08 16 43 H 0.15 0.24 8.06 -2.91 -0.02 0.22 16 44 H 0.19 -0.35 8.06 -2.91 -0.02 -0.38 16 45 H 0.06 0.10 8.14 -2.39 -0.02 0.08 16 46 H 0.09 -0.32 8.14 -2.38 -0.02 -0.34 16 47 H 0.08 -0.20 8.14 -2.39 -0.02 -0.22 16 48 H 0.07 0.45 7.09 -2.39 -0.02 0.44 16 Total: 0.00 -26.98 393.18 2.14 -24.84 By element: Atomic # 1 Polarization: -5.41 SS G_CDS: -0.35 Total: -5.76 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 6.19 Total: 9.68 kcal Atomic # 7 Polarization: -1.89 SS G_CDS: -5.61 Total: -7.50 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.11 Total: -15.33 kcal Atomic # 14 Polarization: -7.96 SS G_CDS: 2.02 Total: -5.94 kcal Total: -26.98 2.14 -24.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001681335946.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.968 kcal (2) G-P(sol) polarization free energy of solvation -26.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds