Wall clock time and date at job start Wed Apr 1 2020 03:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50695 * 109.46988 * 2 1 4 4 O 1.21280 * 120.00158 * 0.02562 * 3 2 1 5 5 N 1.34774 * 119.99896 * 180.02562 * 3 2 1 6 6 C 1.39295 * 119.99847 * 184.73281 * 5 3 2 7 7 C 1.38851 * 120.16508 * 330.88411 * 6 5 3 8 8 C 1.38017 * 120.06884 * 179.97438 * 7 6 5 9 9 C 1.38561 * 120.40712 * 0.02562 * 8 7 6 10 10 C 1.37800 * 120.33032 * 0.02562 * 9 8 7 11 11 C 1.39681 * 119.91992 * 359.97438 * 10 9 8 12 12 C 1.47524 * 120.19762 * 179.97438 * 11 10 9 13 13 O 1.21594 * 119.99960 * 135.20079 * 12 11 10 14 14 N 1.34768 * 120.00233 * 315.20051 * 12 11 10 15 15 C 1.47869 * 126.94503 * 4.81641 * 14 12 11 16 16 C 1.56013 * 105.10801 * 181.98087 * 15 14 12 17 17 H 1.08997 * 116.25439 * 159.68107 * 16 15 14 18 18 C 1.57082 * 99.60664 * 32.80607 * 16 15 14 19 19 C 1.49290 * 126.94753 * 184.50505 * 14 12 11 20 20 H 1.08996 * 116.15126 * 15.85439 * 19 14 12 21 21 C 1.55486 * 104.35259 * 246.78059 * 19 14 12 22 22 N 1.47878 * 105.17005 * 288.89821 * 21 19 14 23 23 C 1.36923 * 126.94562 * 181.92237 * 22 21 19 24 24 H 1.08008 * 120.00090 * 173.77126 * 23 22 21 25 25 C 1.38817 * 120.00402 * 353.77552 * 23 22 21 26 26 N 1.31624 * 119.99601 * 6.37638 * 25 23 22 27 27 Si 1.86797 * 120.00323 * 186.37863 * 25 23 22 28 28 H 1.48505 * 109.47090 * 94.97969 * 27 25 23 29 29 H 1.48501 * 109.46889 * 214.98268 * 27 25 23 30 30 H 1.48494 * 109.47070 * 334.98380 * 27 25 23 31 31 H 1.08996 * 109.47257 * 59.99721 * 1 2 3 32 32 H 1.09002 * 109.46843 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47370 * 299.99655 * 1 2 3 34 34 H 1.09004 * 109.46871 * 239.99859 * 2 1 3 35 35 H 1.09001 * 109.46853 * 120.00454 * 2 1 3 36 36 H 0.96995 * 120.00425 * 4.72992 * 5 3 2 37 37 H 1.08007 * 119.96165 * 359.97438 * 7 6 5 38 38 H 1.08007 * 119.79623 * 179.74960 * 8 7 6 39 39 H 1.08002 * 119.83400 * 179.97438 * 9 8 7 40 40 H 1.07995 * 120.03906 * 180.02562 * 10 9 8 41 41 H 1.09011 * 110.31516 * 300.88847 * 15 14 12 42 42 H 1.09001 * 110.31903 * 63.07211 * 15 14 12 43 43 H 1.09005 * 112.37067 * 64.27506 * 18 16 15 44 44 H 1.09007 * 112.37253 * 191.71550 * 18 16 15 45 45 H 1.08998 * 110.35132 * 169.94124 * 21 19 14 46 46 H 1.08996 * 110.22330 * 47.79337 * 21 19 14 47 47 H 0.96998 * 119.99687 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 8 1.2442 2.3426 0.0005 5 7 3.3574 1.6671 -0.0005 6 6 3.8224 2.9763 0.0990 7 6 3.0579 4.0273 -0.3895 8 6 3.5204 5.3239 -0.2894 9 6 4.7478 5.5873 0.2971 10 6 5.5207 4.5567 0.7865 11 6 5.0659 3.2394 0.6923 12 6 5.8886 2.1314 1.2137 13 8 5.3741 1.2525 1.8781 14 7 7.2104 2.0932 0.9538 15 6 8.0085 3.1222 0.2532 16 6 9.4547 2.5406 0.1881 17 1 10.1124 2.9673 -0.5691 18 6 9.1170 1.0114 0.0659 19 6 8.1661 1.0065 1.3206 20 1 7.7224 0.0531 1.6070 21 6 9.1110 1.6614 2.3675 22 7 9.9399 2.6142 1.5981 23 6 10.9485 3.4042 2.0812 24 1 11.5503 3.9881 1.4005 25 6 11.1976 3.4547 3.4459 26 7 10.5505 2.6510 4.2631 27 14 12.4510 4.6632 4.1225 28 1 11.7580 5.9010 4.5621 29 1 13.1537 4.0519 5.2791 30 1 13.4376 4.9976 3.0642 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.9872 0.9327 -0.0702 37 1 2.1002 3.8300 -0.8484 38 1 2.9238 6.1377 -0.6745 39 1 5.1009 6.6053 0.3702 40 1 6.4764 4.7675 1.2430 41 1 7.6196 3.2829 -0.7525 42 1 8.0009 4.0554 0.8163 43 1 8.5899 0.7755 -0.8586 44 1 9.9941 0.3801 0.2088 45 1 9.7404 0.9047 2.8357 46 1 8.5286 2.1901 3.1220 47 1 10.7243 2.6865 5.2167 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032689430.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:07:09 Heat of formation + Delta-G solvation = 21.599746 kcal Electronic energy + Delta-G solvation = -30597.519840 eV Core-core repulsion = 26554.232653 eV Total energy + Delta-G solvation = -4043.287188 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.98411 -40.03864 -38.63559 -37.42632 -34.92980 -33.69714 -33.10758 -32.00895 -30.73702 -29.68000 -28.97799 -28.57332 -25.36213 -25.08962 -24.25915 -22.96774 -22.45652 -20.66651 -20.36992 -19.91026 -18.82005 -17.81207 -17.38639 -17.27936 -16.43368 -16.10896 -15.80466 -15.40612 -15.02865 -14.73648 -14.35364 -14.28520 -13.99944 -13.75319 -13.59911 -13.41300 -13.02980 -12.66670 -12.53914 -12.32469 -12.07481 -12.01586 -11.89051 -11.72262 -11.55900 -11.41655 -11.33643 -11.05568 -10.94244 -10.78507 -10.67916 -10.58917 -10.29322 -10.11465 -9.85473 -9.70099 -9.56509 -8.90639 -8.73134 -8.19376 -8.05338 -6.97523 -5.82812 -3.16800 0.97529 1.33703 2.43599 2.91421 2.99390 3.28199 3.34290 3.39280 3.42164 3.84165 4.37602 4.41361 4.65333 4.79790 4.83972 4.89819 5.01120 5.07314 5.13436 5.24710 5.27230 5.33225 5.47022 5.47436 5.51402 5.54528 5.56061 5.68071 5.70557 5.89187 5.91364 5.96926 6.04849 6.16663 6.24356 6.27510 6.33325 6.39724 6.44222 6.50150 6.53135 6.62423 6.95583 7.23772 7.33997 7.45452 7.67009 7.92914 7.96850 8.04898 8.43605 9.04740 9.66056 10.34997 11.29571 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.003009 C = 0.002789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.933552 B = 9301.865131 C =10038.517115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.144 4.144 3 C 0.515 3.485 4 O -0.524 6.524 5 N -0.660 5.660 6 C 0.190 3.810 7 C -0.141 4.141 8 C -0.085 4.085 9 C -0.143 4.143 10 C -0.067 4.067 11 C -0.150 4.150 12 C 0.570 3.430 13 O -0.550 6.550 14 N -0.596 5.596 15 C 0.081 3.919 16 C 0.140 3.860 17 H 0.107 0.893 18 C -0.150 4.150 19 C 0.098 3.902 20 H 0.114 0.886 21 C 0.172 3.828 22 N -0.597 5.597 23 C -0.235 4.235 24 H 0.081 0.919 25 C -0.004 4.004 26 N -0.916 5.916 27 Si 0.911 3.089 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.280 1.280 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.415 0.585 37 H 0.151 0.849 38 H 0.127 0.873 39 H 0.128 0.872 40 H 0.138 0.862 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.053 0.947 46 H 0.051 0.949 47 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.691 -2.332 -13.055 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.184 4.184 3 C 0.304 3.696 4 O -0.400 6.400 5 N -0.303 5.303 6 C 0.094 3.906 7 C -0.161 4.161 8 C -0.104 4.104 9 C -0.162 4.162 10 C -0.086 4.086 11 C -0.156 4.156 12 C 0.359 3.641 13 O -0.430 6.430 14 N -0.328 5.328 15 C -0.044 4.044 16 C 0.031 3.969 17 H 0.125 0.875 18 C -0.190 4.190 19 C -0.004 4.004 20 H 0.132 0.868 21 C 0.047 3.953 22 N -0.321 5.321 23 C -0.362 4.362 24 H 0.099 0.901 25 C -0.201 4.201 26 N -0.562 5.562 27 Si 0.741 3.259 28 H -0.216 1.216 29 H -0.218 1.218 30 H -0.206 1.206 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.252 0.748 37 H 0.168 0.832 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.155 0.845 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.071 0.929 46 H 0.069 0.931 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -14.506 -2.157 -12.406 19.209 hybrid contribution 1.102 0.431 0.657 1.354 sum -13.404 -1.726 -11.749 17.907 Atomic orbital electron populations 1.21536 0.92677 1.01788 1.03394 1.21652 0.98795 0.92935 1.04995 1.20979 0.81306 0.92444 0.74857 1.90638 1.55224 1.46126 1.48060 1.43423 1.08287 1.07401 1.71220 1.17629 0.92439 0.84727 0.95832 1.21423 1.01481 0.91433 1.01756 1.21198 0.95490 0.96309 0.97416 1.21084 0.95071 0.99253 1.00758 1.21380 0.99835 0.90779 0.96640 1.19749 0.96169 0.94729 1.04957 1.17756 0.80816 0.85281 0.80228 1.90758 1.72199 1.40231 1.39861 1.49161 1.05940 1.22074 1.55669 1.23472 0.93863 0.91934 0.95100 1.23204 0.91035 0.92854 0.89780 0.87494 1.24208 0.99231 0.99020 0.96509 1.24345 0.87672 0.90967 0.97408 0.86799 1.21845 0.90635 0.92121 0.90676 1.45245 1.38581 1.46575 1.01699 1.19038 1.07446 1.18914 0.90836 0.90109 1.24848 0.99865 0.99385 0.95982 1.69929 1.44492 1.38821 1.02975 0.86124 0.80433 0.80715 0.78614 1.21593 1.21757 1.20551 0.91968 0.91861 0.91837 0.88616 0.88148 0.74809 0.83170 0.85554 0.85454 0.84475 0.92600 0.90720 0.91604 0.89699 0.92901 0.93097 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.20 37.16 0.34 -0.77 16 2 C -0.14 -1.22 6.42 -27.88 -0.18 -1.40 16 3 C 0.52 6.42 7.70 -10.99 -0.08 6.33 16 4 O -0.52 -7.86 13.05 5.56 0.07 -7.79 16 5 N -0.66 -8.69 4.73 -9.69 -0.05 -8.73 16 6 C 0.19 2.82 6.39 -83.48 -0.53 2.29 16 7 C -0.14 -1.92 8.74 -39.44 -0.34 -2.27 16 8 C -0.09 -1.01 10.03 -39.54 -0.40 -1.41 16 9 C -0.14 -1.75 10.02 -39.62 -0.40 -2.15 16 10 C -0.07 -0.98 8.58 -39.20 -0.34 -1.32 16 11 C -0.15 -2.40 5.51 -104.81 -0.58 -2.98 16 12 C 0.57 10.31 6.90 -12.48 -0.09 10.22 16 13 O -0.55 -11.18 16.17 5.28 0.09 -11.09 16 14 N -0.60 -10.54 2.95 -158.10 -0.47 -11.00 16 15 C 0.08 1.33 4.99 -1.68 -0.01 1.32 16 16 C 0.14 2.47 5.53 -62.55 -0.35 2.12 16 17 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 18 C -0.15 -2.37 6.83 -22.10 -0.15 -2.52 16 19 C 0.10 1.80 5.22 -62.64 -0.33 1.47 16 20 H 0.11 2.00 8.07 -51.93 -0.42 1.58 16 21 C 0.17 4.00 4.75 -1.96 -0.01 3.99 16 22 N -0.60 -13.79 3.02 -156.68 -0.47 -14.27 16 23 C -0.23 -6.05 10.36 -15.06 -0.16 -6.21 16 24 H 0.08 1.99 7.84 -52.48 -0.41 1.58 16 25 C 0.00 -0.10 5.49 -17.43 -0.10 -0.19 16 26 N -0.92 -26.24 10.61 55.49 0.59 -25.65 16 27 Si 0.91 21.34 29.56 -169.99 -5.02 16.31 16 28 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 29 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 30 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 31 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.60 8.10 -51.93 -0.42 0.17 16 34 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.42 5.05 7.50 -40.82 -0.31 4.74 16 37 H 0.15 2.07 5.76 -52.48 -0.30 1.77 16 38 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.14 2.08 5.80 -52.49 -0.30 1.78 16 41 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 42 H 0.07 1.33 6.12 -51.93 -0.32 1.01 16 43 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 44 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 45 H 0.05 1.35 7.63 -51.93 -0.40 0.96 16 46 H 0.05 1.38 7.53 -51.93 -0.39 0.99 16 47 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 377.94 15.07 5.70 5.70 Total: -1.00 -32.42 377.94 -9.88 -42.30 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -6.63 Total: 7.69 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -3.69 Total: 6.54 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: -0.40 Total: -59.65 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.16 Total: -18.88 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.42 -9.88 -42.30 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032689430.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.900 kcal (2) G-P(sol) polarization free energy of solvation -32.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds