Wall clock time and date at job start Wed Apr 1 2020 03:06:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50706 * 119.99614 * 2 1 4 4 O 1.42901 * 109.46687 * 134.99781 * 3 2 1 5 5 C 1.35650 * 116.99863 * 179.97438 * 4 3 2 6 6 C 1.39342 * 120.54053 * 359.97438 * 5 4 3 7 7 C 1.38305 * 118.44110 * 180.02562 * 6 5 4 8 8 C 1.38764 * 119.44172 * 359.97438 * 7 6 5 9 9 N 1.31377 * 121.07114 * 359.74137 * 8 7 6 10 10 C 1.32866 * 121.68980 * 0.53037 * 9 8 7 11 11 C 1.47826 * 119.77985 * 179.74964 * 10 9 8 12 12 O 1.21552 * 120.00136 * 179.72443 * 11 10 9 13 13 N 1.34780 * 119.99998 * 359.72581 * 11 10 9 14 14 C 1.46496 * 119.99971 * 180.02562 * 13 11 10 15 15 H 1.09000 * 110.68923 * 37.56520 * 14 13 11 16 16 C 1.55483 * 110.60979 * 160.70984 * 14 13 11 17 17 C 1.55839 * 103.32951 * 118.41791 * 16 14 13 18 18 H 1.09005 * 116.13254 * 159.23882 * 17 16 14 19 19 C 1.55385 * 105.04184 * 288.03745 * 17 16 14 20 20 C 1.54852 * 103.48418 * 72.07765 * 19 17 16 21 21 C 1.55839 * 103.44690 * 359.87451 * 20 19 17 22 22 H 1.09000 * 115.56139 * 158.81981 * 21 20 19 23 23 N 1.50238 * 101.05108 * 32.93796 * 21 20 19 24 24 C 1.36932 * 130.83649 * 125.99861 * 23 21 20 25 25 H 1.07998 * 120.00449 * 10.20524 * 24 23 21 26 26 C 1.38816 * 119.99637 * 190.20837 * 24 23 21 27 27 N 1.31620 * 119.99930 * 201.17220 * 26 24 23 28 28 Si 1.86801 * 120.00031 * 21.16514 * 26 24 23 29 29 H 1.48501 * 109.47132 * 269.99864 * 28 26 24 30 30 H 1.48500 * 109.46866 * 150.00435 * 28 26 24 31 31 H 1.48499 * 109.47169 * 30.00182 * 28 26 24 32 32 H 1.08001 * 120.00028 * 359.97438 * 1 2 3 33 33 H 1.07999 * 119.99930 * 179.97438 * 1 2 3 34 34 H 1.07996 * 120.00482 * 180.02562 * 2 1 3 35 35 H 1.09001 * 109.47133 * 15.00531 * 3 2 1 36 36 H 1.08993 * 109.47243 * 255.00138 * 3 2 1 37 37 H 1.08003 * 120.78037 * 359.97438 * 6 5 4 38 38 H 1.07994 * 120.27529 * 179.97438 * 7 6 5 39 39 H 1.08002 * 119.46470 * 179.97438 * 8 7 6 40 40 H 0.96998 * 120.00382 * 359.97438 * 13 11 10 41 41 H 1.08995 * 110.60911 * 359.97438 * 16 14 13 42 42 H 1.09005 * 110.89003 * 236.96336 * 16 14 13 43 43 H 1.09000 * 110.72003 * 313.52331 * 19 17 16 44 44 H 1.09001 * 110.50249 * 190.52658 * 19 17 16 45 45 H 1.09005 * 110.62314 * 241.38057 * 20 19 17 46 46 H 1.08997 * 110.62581 * 118.36764 * 20 19 17 47 47 H 0.97004 * 120.00146 * 354.92456 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9081 2.3430 1.0781 6 6 3.6666 3.4746 0.3016 7 6 4.4907 4.5733 0.4645 8 6 5.5249 4.5193 1.3881 9 7 5.7307 3.4435 2.1135 10 6 4.9693 2.3617 1.9892 11 6 5.2421 1.1721 2.8233 12 8 4.5450 0.1821 2.7164 13 7 6.2637 1.1852 3.7023 14 6 6.5344 0.0061 4.5285 15 1 6.3651 -0.9089 3.9609 16 6 7.9857 0.0490 5.0846 17 6 7.7779 0.0867 6.6286 18 1 8.6272 -0.2277 7.2352 19 6 7.2364 1.5121 6.9278 20 6 5.7897 1.4718 6.3770 21 6 5.6559 0.0242 5.8157 22 1 4.6363 -0.3454 5.7061 23 7 6.5298 -0.7373 6.7715 24 6 6.2676 -1.8394 7.5406 25 1 5.3539 -2.3960 7.3930 26 6 7.1761 -2.2412 8.5102 27 7 7.1602 -3.4802 8.9539 28 14 8.4215 -1.0234 9.1851 29 1 9.6567 -1.0713 8.3622 30 1 8.7486 -1.3772 10.5898 31 1 7.8493 0.3462 9.1399 32 1 -0.5400 0.9353 0.0004 33 1 -0.5400 -0.9353 -0.0004 34 1 1.8501 -0.9352 -0.0004 35 1 1.3854 2.1161 0.2661 36 1 2.4754 1.4869 -0.9926 37 1 2.8555 3.4929 -0.4112 38 1 4.3305 5.4657 -0.1222 39 1 6.1689 5.3769 1.5153 40 1 6.8203 1.9751 3.7874 41 1 8.5008 0.9471 4.7440 42 1 8.5400 -0.8434 4.7935 43 1 7.8253 2.2659 6.4053 44 1 7.2334 1.7018 8.0012 45 1 5.6613 2.2057 5.5813 46 1 5.0693 1.6415 7.1771 47 1 6.4680 -4.0923 8.6586 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096308607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:47 Heat of formation + Delta-G solvation = 27.461691 kcal Electronic energy + Delta-G solvation = -30313.207506 eV Core-core repulsion = 26270.174511 eV Total energy + Delta-G solvation = -4043.032995 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.07593 -41.35667 -39.66367 -39.26503 -35.59282 -35.09514 -34.50257 -33.33024 -31.67226 -31.34505 -30.81449 -29.72640 -27.72698 -26.09020 -25.18202 -23.88889 -23.08109 -22.19153 -21.76873 -20.91571 -20.36110 -19.63968 -19.24998 -18.73154 -18.05102 -17.70345 -17.23586 -16.87358 -16.42866 -16.17595 -15.95011 -15.64386 -15.28083 -15.25835 -15.20806 -14.83243 -14.55343 -14.09322 -13.93401 -13.70613 -13.50526 -13.45302 -13.14542 -13.05179 -12.97056 -12.61011 -12.57272 -12.48755 -12.02050 -11.89814 -11.55826 -11.47438 -11.25028 -11.13322 -11.04097 -10.82159 -10.74016 -10.68920 -10.44336 -10.05545 -9.49577 -9.21946 -8.62331 -5.40619 -0.34582 0.23866 1.05579 1.37204 1.55319 1.73070 1.79073 2.07212 2.26013 2.55938 2.84871 2.98964 3.19389 3.27771 3.57825 3.67049 3.71011 3.86684 3.89464 3.94028 4.03207 4.04831 4.13681 4.20531 4.25385 4.30818 4.42956 4.45386 4.51474 4.52238 4.63477 4.68541 4.86075 4.88410 4.92489 4.99169 5.03137 5.06572 5.19123 5.30671 5.32960 5.43486 5.52457 5.55584 5.61965 5.62551 6.02893 6.22219 6.51412 6.75744 6.85520 7.28250 7.38522 8.23820 8.88003 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015217 B = 0.003033 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1839.575339 B = 9228.080426 C =10646.561227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.183 4.183 3 C 0.075 3.925 4 O -0.304 6.304 5 C 0.120 3.880 6 C -0.173 4.173 7 C -0.086 4.086 8 C 0.056 3.944 9 N -0.434 5.434 10 C 0.009 3.991 11 C 0.561 3.439 12 O -0.563 6.563 13 N -0.683 5.683 14 C 0.147 3.853 15 H 0.053 0.947 16 C -0.120 4.120 17 C 0.105 3.895 18 H 0.089 0.911 19 C -0.129 4.129 20 C -0.118 4.118 21 C 0.122 3.878 22 H 0.057 0.943 23 N -0.631 5.631 24 C -0.297 4.297 25 H 0.032 0.968 26 C -0.085 4.085 27 N -0.965 5.965 28 Si 1.104 2.896 29 H -0.269 1.269 30 H -0.313 1.313 31 H -0.242 1.242 32 H 0.120 0.880 33 H 0.115 0.885 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.176 0.824 38 H 0.190 0.810 39 H 0.202 0.798 40 H 0.418 0.582 41 H 0.113 0.887 42 H 0.064 0.936 43 H 0.107 0.893 44 H 0.060 0.940 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.127 25.230 -24.099 35.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.201 4.201 3 C 0.001 3.999 4 O -0.215 6.215 5 C 0.069 3.931 6 C -0.199 4.199 7 C -0.105 4.105 8 C -0.106 4.106 9 N -0.146 5.146 10 C -0.128 4.128 11 C 0.347 3.653 12 O -0.441 6.441 13 N -0.336 5.336 14 C 0.040 3.960 15 H 0.072 0.928 16 C -0.160 4.160 17 C 0.000 4.000 18 H 0.106 0.894 19 C -0.167 4.167 20 C -0.158 4.158 21 C 0.014 3.986 22 H 0.075 0.925 23 N -0.355 5.355 24 C -0.426 4.426 25 H 0.050 0.950 26 C -0.277 4.277 27 N -0.610 5.610 28 Si 0.931 3.069 29 H -0.197 1.197 30 H -0.242 1.242 31 H -0.166 1.166 32 H 0.138 0.862 33 H 0.133 0.867 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.111 0.889 37 H 0.193 0.807 38 H 0.207 0.793 39 H 0.218 0.782 40 H 0.257 0.743 41 H 0.131 0.869 42 H 0.083 0.917 43 H 0.125 0.875 44 H 0.079 0.921 45 H 0.104 0.896 46 H 0.064 0.936 47 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.748 24.220 -22.333 33.286 hybrid contribution -2.428 -1.268 -1.292 3.029 sum -7.177 22.953 -23.624 33.711 Atomic orbital electron populations 1.24097 0.94673 1.03892 0.96548 1.22677 0.96472 0.97611 1.03383 1.22213 0.87623 0.97629 0.92393 1.86433 1.41932 1.34734 1.58443 1.20297 0.90533 0.87980 0.94241 1.22158 1.03901 0.92252 1.01612 1.22752 0.92260 0.99129 0.96354 1.23466 0.98184 0.96020 0.92929 1.67564 1.24808 0.99154 1.23079 1.20336 0.96854 0.94903 1.00663 1.18204 0.80639 0.86563 0.79896 1.90821 1.49357 1.34929 1.68995 1.45734 1.32115 1.17621 1.38096 1.22138 0.96211 0.87342 0.90316 0.92836 1.23180 0.93906 1.03332 0.95560 1.23423 0.89624 0.91599 0.95377 0.89374 1.23089 0.96007 0.96359 1.01287 1.22827 0.97189 0.96047 0.99710 1.23258 0.93102 0.92266 0.90011 0.92490 1.46877 1.09349 1.30955 1.48341 1.19889 1.06741 1.02009 1.13922 0.95025 1.27240 1.03980 0.99943 0.96527 1.71040 1.33798 1.03857 1.52291 0.83418 0.74024 0.75098 0.74375 1.19699 1.24181 1.16603 0.86182 0.86728 0.88174 0.89201 0.88899 0.80695 0.79284 0.78177 0.74264 0.86884 0.91741 0.87504 0.92134 0.89574 0.93573 0.94795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.18 14.31 67.78 0.97 -1.21 16 2 C -0.18 -3.48 9.89 25.65 0.25 -3.23 16 3 C 0.08 1.27 5.17 71.24 0.37 1.64 16 4 O -0.30 -8.36 8.18 -68.66 -0.56 -8.92 16 5 C 0.12 2.82 6.71 22.93 0.15 2.98 16 6 C -0.17 -2.17 9.13 22.55 0.21 -1.96 16 7 C -0.09 -0.66 10.10 22.41 0.23 -0.43 16 8 C 0.06 0.65 11.17 84.89 0.95 1.60 16 9 N -0.43 -8.94 9.54 -184.63 -1.76 -10.70 16 10 C 0.01 0.23 6.76 41.92 0.28 0.52 16 11 C 0.56 19.51 7.79 86.78 0.68 20.18 16 12 O -0.56 -24.61 14.88 17.11 0.25 -24.35 16 13 N -0.68 -21.26 3.62 -436.74 -1.58 -22.84 16 14 C 0.15 5.61 3.09 46.83 0.14 5.76 16 15 H 0.05 2.40 7.72 -2.39 -0.02 2.39 16 16 C -0.12 -4.10 6.23 32.43 0.20 -3.90 16 17 C 0.10 4.24 3.59 46.06 0.17 4.41 16 18 H 0.09 3.72 3.41 -2.38 -0.01 3.72 16 19 C -0.13 -4.25 6.22 32.05 0.20 -4.05 16 20 C -0.12 -4.21 6.32 32.21 0.20 -4.00 16 21 C 0.12 5.38 5.34 46.23 0.25 5.63 16 22 H 0.06 2.84 8.14 -2.39 -0.02 2.82 16 23 N -0.63 -32.24 2.84 -616.11 -1.75 -33.99 16 24 C -0.30 -18.45 10.81 84.04 0.91 -17.54 16 25 H 0.03 2.18 8.06 -2.91 -0.02 2.16 16 26 C -0.09 -5.30 5.50 84.86 0.47 -4.83 16 27 N -0.97 -65.15 13.70 21.65 0.30 -64.85 16 28 Si 1.10 53.98 25.01 68.60 1.72 55.69 16 29 H -0.27 -11.97 6.60 99.48 0.66 -11.32 16 30 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 31 H -0.24 -10.36 4.94 99.48 0.49 -9.87 16 32 H 0.12 1.13 7.90 -2.91 -0.02 1.11 16 33 H 0.11 1.42 8.06 -2.91 -0.02 1.40 16 34 H 0.10 2.29 8.06 -2.91 -0.02 2.27 16 35 H 0.09 1.04 7.42 -2.39 -0.02 1.02 16 36 H 0.09 1.08 7.69 -2.39 -0.02 1.06 16 37 H 0.18 0.99 6.46 -2.91 -0.02 0.98 16 38 H 0.19 -0.28 8.06 -2.91 -0.02 -0.30 16 39 H 0.20 0.77 8.06 -2.91 -0.02 0.74 16 40 H 0.42 10.46 7.36 -92.71 -0.68 9.77 16 41 H 0.11 2.78 7.33 -2.39 -0.02 2.76 16 42 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 43 H 0.11 2.53 7.80 -2.39 -0.02 2.51 16 44 H 0.06 2.10 6.49 -2.39 -0.02 2.08 16 45 H 0.09 2.59 6.50 -2.38 -0.02 2.58 16 46 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 47 H 0.24 16.66 8.73 -92.71 -0.81 15.85 16 Total: -1.00 -88.96 374.10 3.26 -85.71 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: 0.02 Total: 22.69 kcal Atomic # 6 Polarization: -5.06 SS G_CDS: 6.62 Total: 1.56 kcal Atomic # 7 Polarization: -127.59 SS G_CDS: -4.79 Total: -132.38 kcal Atomic # 8 Polarization: -32.96 SS G_CDS: -0.31 Total: -33.27 kcal Atomic # 14 Polarization: 53.98 SS G_CDS: 1.72 Total: 55.69 kcal Total: -88.96 3.26 -85.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096308607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.168 kcal (2) G-P(sol) polarization free energy of solvation -88.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds