Wall clock time and date at job start Wed Apr 1 2020 02:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35642 * 116.99841 * 2 1 4 4 C 1.46388 * 126.59641 * 270.24361 * 3 2 1 5 5 C 1.39838 * 133.59122 * 359.33823 * 4 3 2 6 6 C 1.36534 * 119.79219 * 180.41657 * 5 4 3 7 7 C 1.38895 * 120.53710 * 0.25173 * 6 5 4 8 8 C 1.37678 * 120.69456 * 0.02562 * 7 6 5 9 9 C 1.39292 * 119.82481 * 359.97438 * 8 7 6 10 10 N 1.37491 * 133.00226 * 179.97438 * 9 8 7 11 11 H 0.96999 * 125.11810 * 0.02562 * 10 9 8 12 12 C 1.36687 * 126.59332 * 90.02324 * 3 2 1 13 13 C 1.46313 * 125.41884 * 359.96714 * 12 3 2 14 14 O 1.21748 * 119.99500 * 359.97438 * 13 12 3 15 15 N 1.34771 * 120.00362 * 179.97438 * 13 12 3 16 16 C 1.46497 * 120.00410 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.46773 * 325.00568 * 16 15 13 18 18 C 1.53003 * 109.47098 * 85.00038 * 16 15 13 19 19 C 1.52996 * 109.47459 * 205.00169 * 16 15 13 20 20 C 1.53945 * 113.74354 * 161.82220 * 19 16 15 21 21 N 1.47817 * 86.03885 * 222.08463 * 20 19 16 22 22 C 1.36928 * 134.45879 * 204.64429 * 21 20 19 23 23 H 1.08005 * 120.00458 * 179.86613 * 22 21 20 24 24 C 1.38813 * 120.00190 * 359.86403 * 22 21 20 25 25 N 1.31622 * 119.99619 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00290 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46869 * 60.00312 * 26 24 22 28 28 H 1.48497 * 109.46775 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47211 * 300.00074 * 26 24 22 30 30 C 1.47582 * 91.04903 * 24.54846 * 21 20 19 31 31 H 1.08993 * 109.47145 * 299.99864 * 1 2 3 32 32 H 1.08997 * 109.47028 * 60.00287 * 1 2 3 33 33 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 34 34 H 1.08002 * 120.10550 * 0.68952 * 5 4 3 35 35 H 1.08002 * 119.73040 * 180.23071 * 6 5 4 36 36 H 1.08005 * 119.65576 * 179.97438 * 7 6 5 37 37 H 1.07993 * 120.08829 * 179.97438 * 8 7 6 38 38 H 0.97004 * 119.99816 * 0.02562 * 15 13 12 39 39 H 1.09000 * 109.47155 * 180.02562 * 18 16 15 40 40 H 1.09004 * 109.46696 * 300.08165 * 18 16 15 41 41 H 1.08995 * 109.46954 * 60.07872 * 18 16 15 42 42 H 1.09000 * 112.94901 * 293.41587 * 19 16 15 43 43 H 1.09007 * 113.76849 * 336.35020 * 20 19 16 44 44 H 1.08996 * 113.76854 * 107.74343 * 20 19 16 45 45 H 0.96996 * 120.00099 * 179.97438 * 25 24 22 46 46 H 1.09003 * 113.77030 * 221.15373 * 30 21 20 47 47 H 1.09002 * 113.87609 * 89.76721 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 2.4365 1.9885 -1.1753 5 6 2.3335 1.7735 -2.5532 6 6 2.8121 2.7103 -3.4235 7 6 3.4057 3.8740 -2.9517 8 6 3.5233 4.1046 -1.5994 9 6 3.0425 3.1636 -0.6919 10 7 3.0172 3.1134 0.6819 11 1 3.3674 3.7991 1.2719 12 6 2.4151 1.9344 1.0974 13 6 2.2098 1.5319 2.4891 14 8 1.6683 0.4713 2.7423 15 7 2.6202 2.3351 3.4905 16 6 2.4142 1.9323 4.8838 17 1 1.4739 1.3876 4.9693 18 6 3.5677 1.0317 5.3302 19 6 2.3654 3.1767 5.7726 20 6 1.7258 2.9293 7.1509 21 7 1.0430 4.2252 6.9527 22 6 0.5136 5.1685 7.7921 23 1 0.0562 6.0582 7.3849 24 6 0.5645 4.9815 9.1667 25 7 1.1213 3.8970 9.6630 26 14 -0.1572 6.2687 10.3119 27 1 -1.6053 6.4301 10.0253 28 1 0.0238 5.8351 11.7206 29 1 0.5368 7.5644 10.1003 30 6 1.1633 4.0953 5.4875 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8729 0.8714 -2.9278 35 1 2.7287 2.5450 -4.4876 36 1 3.7798 4.6054 -3.6529 37 1 3.9869 5.0126 -1.2433 38 1 3.0513 3.1803 3.2886 39 1 3.4142 0.7316 6.3668 40 1 3.6033 0.1458 4.6961 41 1 4.5078 1.5768 5.2460 42 1 3.3186 3.7033 5.8193 43 1 1.0490 2.0751 7.1743 44 1 2.4410 2.9294 7.9734 45 1 1.1573 3.7664 10.6234 46 1 1.4302 5.0247 4.9844 47 1 0.3217 3.5848 5.0193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000970940407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:40 Heat of formation + Delta-G solvation = 43.340748 kcal Electronic energy + Delta-G solvation = -29503.806281 eV Core-core repulsion = 25461.461854 eV Total energy + Delta-G solvation = -4042.344427 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.72117 -39.67245 -38.31289 -37.86602 -36.91074 -34.88084 -32.24651 -31.85581 -30.94458 -29.49680 -29.07887 -27.52072 -26.89267 -25.08602 -24.43813 -23.66803 -22.41495 -21.67570 -20.87682 -20.28236 -19.38354 -18.41577 -17.42925 -16.93613 -16.71927 -16.27752 -16.00395 -15.58553 -15.09621 -14.91782 -14.78486 -14.61888 -14.29032 -14.19043 -14.01565 -13.97969 -13.60805 -13.32099 -13.15216 -12.38519 -12.16103 -12.11376 -11.94358 -11.83314 -11.65187 -11.45120 -11.34536 -11.27003 -10.91016 -10.73459 -10.41384 -10.31628 -10.06530 -9.89945 -9.86839 -9.73991 -9.47697 -9.00564 -8.82497 -8.58018 -7.96979 -6.91583 -5.79905 -3.12331 0.47157 1.26338 1.69067 2.52627 3.05927 3.14105 3.37165 3.41301 3.42744 3.49984 3.77440 4.32269 4.42016 4.51720 4.72037 4.87037 4.96862 5.05517 5.10969 5.15195 5.19621 5.23453 5.33482 5.34269 5.40314 5.49751 5.59304 5.61183 5.69773 5.76583 5.92375 5.95418 6.01439 6.12015 6.17129 6.21964 6.28566 6.30397 6.39356 6.49797 6.56868 6.68185 6.73630 7.01862 7.18108 7.31062 7.43602 7.47858 7.52232 7.94774 8.12932 9.01365 9.67642 10.56277 11.37271 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.017230 B = 0.002309 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.716353 B =12123.869073 C =12830.361168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.296 6.296 3 C 0.097 3.903 4 C -0.136 4.136 5 C -0.052 4.052 6 C -0.153 4.153 7 C -0.084 4.084 8 C -0.136 4.136 9 C 0.130 3.870 10 N -0.578 5.578 11 H 0.421 0.579 12 C 0.009 3.991 13 C 0.578 3.422 14 O -0.511 6.511 15 N -0.715 5.715 16 C 0.152 3.848 17 H 0.091 0.909 18 C -0.159 4.159 19 C -0.148 4.148 20 C 0.177 3.823 21 N -0.612 5.612 22 C -0.225 4.225 23 H 0.078 0.922 24 C -0.007 4.007 25 N -0.921 5.921 26 Si 0.912 3.088 27 H -0.285 1.285 28 H -0.289 1.289 29 H -0.284 1.284 30 C 0.125 3.875 31 H 0.050 0.950 32 H 0.042 0.958 33 H 0.094 0.906 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.392 0.608 39 H 0.072 0.928 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.089 0.911 43 H 0.029 0.971 44 H 0.076 0.924 45 H 0.255 0.745 46 H 0.039 0.961 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.062 -2.968 -25.317 26.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.211 6.211 3 C 0.043 3.957 4 C -0.141 4.141 5 C -0.071 4.071 6 C -0.172 4.172 7 C -0.104 4.104 8 C -0.156 4.156 9 C 0.021 3.979 10 N -0.186 5.186 11 H 0.260 0.740 12 C -0.100 4.100 13 C 0.364 3.636 14 O -0.386 6.386 15 N -0.365 5.365 16 C 0.048 3.952 17 H 0.109 0.891 18 C -0.217 4.217 19 C -0.168 4.168 20 C 0.051 3.949 21 N -0.338 5.338 22 C -0.353 4.353 23 H 0.096 0.904 24 C -0.204 4.204 25 N -0.568 5.568 26 Si 0.743 3.257 27 H -0.212 1.212 28 H -0.215 1.215 29 H -0.211 1.211 30 C -0.001 4.001 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.113 0.887 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.226 0.774 39 H 0.091 0.909 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.107 0.893 43 H 0.047 0.953 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 5.665 -3.754 -24.606 25.527 hybrid contribution -0.245 1.638 0.870 1.871 sum 5.420 -2.116 -23.736 24.439 Atomic orbital electron populations 1.23002 0.78695 1.03286 1.00525 1.85968 1.19938 1.21783 1.93375 1.18611 1.00682 0.87435 0.88942 1.19374 1.06158 0.94999 0.93558 1.20344 0.97443 0.98893 0.90425 1.20662 1.02000 0.94867 0.99661 1.20899 0.97959 0.97289 0.94222 1.20120 1.04706 0.98764 0.92053 1.18130 1.00571 0.96399 0.82827 1.41777 1.53422 1.18158 1.05214 0.74016 1.20540 1.06520 0.88851 0.94092 1.16947 0.79420 0.84578 0.82687 1.90901 1.42331 1.22177 1.83194 1.46057 1.61169 1.22484 1.06820 1.21185 0.99695 0.96262 0.78097 0.89123 1.22117 0.97943 0.99430 1.02196 1.23882 0.99429 0.94791 0.98705 1.22228 0.93159 0.87897 0.91637 1.45971 1.68862 1.19459 0.99467 1.18964 1.31616 0.97725 0.86966 0.90386 1.24787 1.01303 0.97821 0.96497 1.69792 1.48708 1.26647 1.11671 0.86199 0.78869 0.80626 0.80053 1.21184 1.21500 1.21098 1.22532 0.93819 0.95748 0.88020 0.93090 0.93942 0.88718 0.85703 0.85733 0.85425 0.85615 0.77434 0.90862 0.92599 0.92773 0.89318 0.95323 0.90617 0.93519 0.94299 0.95045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 11.13 101.05 1.12 1.56 16 2 O -0.30 -4.17 9.74 -30.73 -0.30 -4.47 16 3 C 0.10 1.31 6.47 -36.86 -0.24 1.07 16 4 C -0.14 -1.57 6.35 -105.06 -0.67 -2.24 16 5 C -0.05 -0.50 10.05 -39.60 -0.40 -0.90 16 6 C -0.15 -1.17 9.97 -39.95 -0.40 -1.56 16 7 C -0.08 -0.60 10.01 -39.54 -0.40 -1.00 16 8 C -0.14 -1.08 10.08 -39.39 -0.40 -1.48 16 9 C 0.13 1.32 7.25 -83.98 -0.61 0.72 16 10 N -0.58 -5.60 6.04 -7.24 -0.04 -5.64 16 11 H 0.42 2.85 8.08 -40.82 -0.33 2.52 16 12 C 0.01 0.12 6.98 -82.05 -0.57 -0.46 16 13 C 0.58 8.38 7.74 -13.02 -0.10 8.27 16 14 O -0.51 -9.11 15.85 -6.96 -0.11 -9.22 16 15 N -0.72 -9.10 4.94 -55.23 -0.27 -9.37 16 16 C 0.15 2.28 2.29 -67.93 -0.16 2.12 16 17 H 0.09 1.57 7.48 -51.93 -0.39 1.18 16 18 C -0.16 -2.19 9.44 37.16 0.35 -1.84 16 19 C -0.15 -2.56 3.35 -89.69 -0.30 -2.86 16 20 C 0.18 4.02 6.98 -2.84 -0.02 4.00 16 21 N -0.61 -15.49 3.70 -177.67 -0.66 -16.14 16 22 C -0.23 -6.30 10.70 -15.06 -0.16 -6.46 16 23 H 0.08 2.10 7.83 -52.48 -0.41 1.69 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.92 -27.13 11.39 55.49 0.63 -26.49 16 26 Si 0.91 22.05 29.55 -169.99 -5.02 17.03 16 27 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 28 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 29 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 30 C 0.12 2.46 8.38 -2.96 -0.02 2.44 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.39 3.92 7.62 -40.82 -0.31 3.61 16 39 H 0.07 1.03 8.09 -51.93 -0.42 0.61 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 43 H 0.03 0.68 8.03 -51.93 -0.42 0.26 16 44 H 0.08 1.90 7.17 -51.93 -0.37 1.52 16 45 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 46 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.03 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 395.12 15.07 5.95 5.95 Total: -1.00 -34.50 395.12 -9.74 -44.24 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -6.86 Total: 3.04 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -3.06 Total: 1.08 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.34 Total: -57.65 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.41 Total: -13.69 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.50 -9.74 -44.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970940407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.577 kcal (2) G-P(sol) polarization free energy of solvation -34.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds