Wall clock time and date at job start Wed Apr 1 2020 02:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35642 * 116.99841 * 2 1 4 4 C 1.46388 * 126.59641 * 270.24361 * 3 2 1 5 5 C 1.39838 * 133.59122 * 359.33823 * 4 3 2 6 6 C 1.36534 * 119.79219 * 180.41657 * 5 4 3 7 7 C 1.38895 * 120.53710 * 0.25173 * 6 5 4 8 8 C 1.37678 * 120.69456 * 0.02562 * 7 6 5 9 9 C 1.39292 * 119.82481 * 359.97438 * 8 7 6 10 10 N 1.37491 * 133.00226 * 179.97438 * 9 8 7 11 11 H 0.96999 * 125.11810 * 0.02562 * 10 9 8 12 12 C 1.36687 * 126.59332 * 90.02324 * 3 2 1 13 13 C 1.46313 * 125.41884 * 359.96714 * 12 3 2 14 14 O 1.21748 * 119.99500 * 359.97438 * 13 12 3 15 15 N 1.34771 * 120.00362 * 179.97438 * 13 12 3 16 16 C 1.46497 * 120.00410 * 179.97438 * 15 13 12 17 17 H 1.09002 * 109.46773 * 325.00568 * 16 15 13 18 18 C 1.53003 * 109.47098 * 85.00038 * 16 15 13 19 19 C 1.52996 * 109.47459 * 205.00169 * 16 15 13 20 20 C 1.53945 * 113.74354 * 161.82220 * 19 16 15 21 21 N 1.47817 * 86.03885 * 222.08463 * 20 19 16 22 22 C 1.36928 * 134.45879 * 204.64429 * 21 20 19 23 23 H 1.08005 * 120.00458 * 179.86613 * 22 21 20 24 24 C 1.38813 * 120.00190 * 359.86403 * 22 21 20 25 25 N 1.31622 * 119.99619 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00290 * 179.97438 * 24 22 21 27 27 H 1.48499 * 109.46869 * 60.00312 * 26 24 22 28 28 H 1.48497 * 109.46775 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47211 * 300.00074 * 26 24 22 30 30 C 1.47582 * 91.04903 * 24.54846 * 21 20 19 31 31 H 1.08993 * 109.47145 * 299.99864 * 1 2 3 32 32 H 1.08997 * 109.47028 * 60.00287 * 1 2 3 33 33 H 1.09001 * 109.47048 * 179.97438 * 1 2 3 34 34 H 1.08002 * 120.10550 * 0.68952 * 5 4 3 35 35 H 1.08002 * 119.73040 * 180.23071 * 6 5 4 36 36 H 1.08005 * 119.65576 * 179.97438 * 7 6 5 37 37 H 1.07993 * 120.08829 * 179.97438 * 8 7 6 38 38 H 0.97004 * 119.99816 * 0.02562 * 15 13 12 39 39 H 1.09000 * 109.47155 * 180.02562 * 18 16 15 40 40 H 1.09004 * 109.46696 * 300.08165 * 18 16 15 41 41 H 1.08995 * 109.46954 * 60.07872 * 18 16 15 42 42 H 1.09000 * 112.94901 * 293.41587 * 19 16 15 43 43 H 1.09007 * 113.76849 * 336.35020 * 20 19 16 44 44 H 1.08996 * 113.76854 * 107.74343 * 20 19 16 45 45 H 0.96996 * 120.00099 * 179.97438 * 25 24 22 46 46 H 1.09003 * 113.77030 * 221.15373 * 30 21 20 47 47 H 1.09002 * 113.87609 * 89.76721 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2086 0.0000 4 6 2.4365 1.9885 -1.1753 5 6 2.3335 1.7735 -2.5532 6 6 2.8121 2.7103 -3.4235 7 6 3.4057 3.8740 -2.9517 8 6 3.5233 4.1046 -1.5994 9 6 3.0425 3.1636 -0.6919 10 7 3.0172 3.1134 0.6819 11 1 3.3674 3.7991 1.2719 12 6 2.4151 1.9344 1.0974 13 6 2.2098 1.5319 2.4891 14 8 1.6683 0.4713 2.7423 15 7 2.6202 2.3351 3.4905 16 6 2.4142 1.9323 4.8838 17 1 1.4739 1.3876 4.9693 18 6 3.5677 1.0317 5.3302 19 6 2.3654 3.1767 5.7726 20 6 1.7258 2.9293 7.1509 21 7 1.0430 4.2252 6.9527 22 6 0.5136 5.1685 7.7921 23 1 0.0562 6.0582 7.3849 24 6 0.5645 4.9815 9.1667 25 7 1.1213 3.8970 9.6630 26 14 -0.1572 6.2687 10.3119 27 1 -1.6053 6.4301 10.0253 28 1 0.0238 5.8351 11.7206 29 1 0.5368 7.5644 10.1003 30 6 1.1633 4.0953 5.4875 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8729 0.8714 -2.9278 35 1 2.7287 2.5450 -4.4876 36 1 3.7798 4.6054 -3.6529 37 1 3.9869 5.0126 -1.2433 38 1 3.0513 3.1803 3.2886 39 1 3.4142 0.7316 6.3668 40 1 3.6033 0.1458 4.6961 41 1 4.5078 1.5768 5.2460 42 1 3.3186 3.7033 5.8193 43 1 1.0490 2.0751 7.1743 44 1 2.4410 2.9294 7.9734 45 1 1.1573 3.7664 10.6234 46 1 1.4302 5.0247 4.9844 47 1 0.3217 3.5848 5.0193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970940407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:26:38 Heat of formation + Delta-G solvation = 21.079863 kcal Electronic energy + Delta-G solvation = -29504.771586 eV Core-core repulsion = 25461.461854 eV Total energy + Delta-G solvation = -4043.309732 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.54330 -40.88514 -39.65006 -38.98467 -37.64194 -36.26399 -34.18543 -32.56322 -32.22887 -30.30475 -29.91292 -29.33669 -27.79318 -26.66865 -25.88818 -24.98540 -23.13355 -22.86062 -21.97956 -21.42076 -20.75894 -19.42712 -18.79312 -18.26213 -17.62852 -17.39947 -17.01486 -16.88810 -16.51507 -16.11025 -15.86082 -15.80690 -15.46241 -15.26707 -14.99401 -14.90682 -14.79712 -14.67045 -14.18546 -13.97833 -13.44504 -13.29310 -13.11995 -12.98079 -12.79545 -12.70517 -12.68265 -12.56626 -12.44116 -12.08405 -11.97367 -11.84288 -11.65571 -11.33817 -11.22073 -10.87830 -10.86617 -10.64873 -10.21568 -9.31419 -8.94669 -8.72632 -7.92365 -5.26102 -0.34638 0.60537 0.88309 1.44104 1.47459 1.53708 1.70660 1.97939 2.09100 2.45758 2.78816 2.96365 3.27323 3.35507 3.49056 3.68469 3.76590 3.91828 4.14036 4.21314 4.22132 4.24310 4.39999 4.41022 4.46304 4.52076 4.53613 4.56326 4.68225 4.72394 4.76387 4.78332 4.83136 4.91456 5.03264 5.10675 5.22541 5.23546 5.27617 5.36457 5.45557 5.52001 5.55367 5.61303 5.67046 5.91961 6.06099 6.32396 6.47135 6.53586 6.89928 7.03934 7.58790 8.54067 9.24407 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.017230 B = 0.002309 C = 0.002182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.716353 B =12123.869073 C =12830.361168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.320 6.320 3 C 0.078 3.922 4 C -0.162 4.162 5 C -0.070 4.070 6 C -0.147 4.147 7 C -0.078 4.078 8 C -0.139 4.139 9 C 0.123 3.877 10 N -0.564 5.564 11 H 0.434 0.566 12 C -0.006 4.006 13 C 0.581 3.419 14 O -0.552 6.552 15 N -0.701 5.701 16 C 0.164 3.836 17 H 0.065 0.935 18 C -0.152 4.152 19 C -0.109 4.109 20 C 0.171 3.829 21 N -0.643 5.643 22 C -0.238 4.238 23 H 0.083 0.917 24 C -0.067 4.067 25 N -0.953 5.953 26 Si 0.979 3.021 27 H -0.280 1.280 28 H -0.294 1.294 29 H -0.273 1.273 30 C 0.127 3.873 31 H 0.031 0.969 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.151 0.849 36 H 0.161 0.839 37 H 0.152 0.848 38 H 0.409 0.591 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.108 0.892 43 H 0.012 0.988 44 H 0.048 0.952 45 H 0.249 0.751 46 H 0.063 0.937 47 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.253 -0.710 -28.024 28.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.235 6.235 3 C 0.023 3.977 4 C -0.166 4.166 5 C -0.089 4.089 6 C -0.166 4.166 7 C -0.098 4.098 8 C -0.159 4.159 9 C 0.014 3.986 10 N -0.174 5.174 11 H 0.275 0.725 12 C -0.116 4.116 13 C 0.368 3.632 14 O -0.430 6.430 15 N -0.352 5.352 16 C 0.059 3.941 17 H 0.083 0.917 18 C -0.211 4.211 19 C -0.128 4.128 20 C 0.045 3.955 21 N -0.370 5.370 22 C -0.366 4.366 23 H 0.101 0.899 24 C -0.261 4.261 25 N -0.602 5.602 26 Si 0.807 3.193 27 H -0.206 1.206 28 H -0.220 1.220 29 H -0.199 1.199 30 C 0.002 3.998 31 H 0.050 0.950 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.147 0.853 35 H 0.169 0.831 36 H 0.178 0.822 37 H 0.170 0.830 38 H 0.246 0.754 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.126 0.874 43 H 0.029 0.971 44 H 0.066 0.934 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 6.879 -1.443 -27.355 28.243 hybrid contribution -0.630 0.945 1.532 1.907 sum 6.250 -0.498 -25.823 26.573 Atomic orbital electron populations 1.23092 0.77654 1.04344 1.00353 1.85899 1.21147 1.22821 1.93606 1.19021 1.00952 0.87451 0.90231 1.19551 1.07505 0.95553 0.94027 1.20549 0.98394 0.99953 0.89980 1.21039 1.00490 0.94322 1.00753 1.21370 0.96450 0.97441 0.94492 1.20502 1.04243 0.99080 0.92076 1.18441 1.00626 0.96607 0.82966 1.41626 1.52849 1.17391 1.05487 0.72452 1.20184 1.08235 0.90370 0.92833 1.17139 0.78580 0.84024 0.83499 1.90877 1.44191 1.23989 1.83903 1.45774 1.60887 1.23050 1.05486 1.20828 0.99306 0.94980 0.78992 0.91681 1.22052 0.98192 0.99196 1.01625 1.23469 0.99078 0.94977 0.95305 1.22131 0.92683 0.86743 0.93919 1.46401 1.68942 1.19729 1.01881 1.19384 1.30948 0.98487 0.87809 0.89917 1.25646 1.02303 0.99987 0.98113 1.69986 1.50271 1.28526 1.11390 0.85148 0.78214 0.78482 0.77464 1.20630 1.22025 1.19860 1.22677 0.94577 0.97237 0.85318 0.94986 0.92248 0.87140 0.85308 0.83143 0.82162 0.83032 0.75443 0.91476 0.93014 0.90655 0.87357 0.97065 0.93358 0.94181 0.91918 0.95199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.92 11.13 113.37 1.26 2.18 16 2 O -0.32 -9.35 9.74 -77.98 -0.76 -10.11 16 3 C 0.08 2.13 6.47 24.03 0.16 2.28 16 4 C -0.16 -3.62 6.35 -20.15 -0.13 -3.75 16 5 C -0.07 -1.23 10.05 22.26 0.22 -1.01 16 6 C -0.15 -1.79 9.97 22.03 0.22 -1.57 16 7 C -0.08 -0.80 10.01 22.29 0.22 -0.58 16 8 C -0.14 -1.73 10.08 22.39 0.23 -1.51 16 9 C 0.12 2.27 7.25 39.13 0.28 2.56 16 10 N -0.56 -10.07 6.04 -176.83 -1.07 -11.14 16 11 H 0.43 4.87 8.08 -92.71 -0.75 4.12 16 12 C -0.01 -0.16 6.98 39.79 0.28 0.11 16 13 C 0.58 16.92 7.74 86.34 0.67 17.59 16 14 O -0.55 -20.41 15.85 7.08 0.11 -20.30 16 15 N -0.70 -17.14 4.94 -446.84 -2.21 -19.35 16 16 C 0.16 4.87 2.29 44.99 0.10 4.97 16 17 H 0.06 2.33 7.48 -2.39 -0.02 2.31 16 18 C -0.15 -4.13 9.44 71.98 0.68 -3.45 16 19 C -0.11 -3.67 3.35 -10.13 -0.03 -3.70 16 20 C 0.17 8.00 6.98 86.44 0.60 8.60 16 21 N -0.64 -32.77 3.70 -716.01 -2.65 -35.43 16 22 C -0.24 -13.36 10.70 84.04 0.90 -12.46 16 23 H 0.08 4.42 7.83 -2.91 -0.02 4.40 16 24 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 25 N -0.95 -57.59 11.39 21.65 0.25 -57.35 16 26 Si 0.98 45.67 29.55 68.60 2.03 47.70 16 27 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 28 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 29 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 30 C 0.13 4.88 8.38 86.49 0.72 5.60 16 31 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.13 2.02 8.06 -2.91 -0.02 1.99 16 35 H 0.15 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 37 H 0.15 1.07 8.06 -2.91 -0.02 1.05 16 38 H 0.41 7.25 7.62 -92.70 -0.71 6.55 16 39 H 0.07 1.90 8.09 -2.39 -0.02 1.88 16 40 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 43 H 0.01 0.57 8.03 -2.38 -0.02 0.55 16 44 H 0.05 2.51 7.17 -2.39 -0.02 2.49 16 45 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 46 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 47 H 0.03 1.19 8.10 -2.39 -0.02 1.17 16 Total: -1.00 -77.62 395.12 2.10 -75.51 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -0.45 Total: 17.98 kcal Atomic # 6 Polarization: 5.62 SS G_CDS: 6.85 Total: 12.48 kcal Atomic # 7 Polarization: -117.59 SS G_CDS: -5.68 Total: -123.27 kcal Atomic # 8 Polarization: -29.76 SS G_CDS: -0.65 Total: -30.40 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -77.62 2.10 -75.51 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970940407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.594 kcal (2) G-P(sol) polarization free energy of solvation -77.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds