Wall clock time and date at job start Wed Apr 1 2020 02:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 110.91631 * 2 1 4 4 C 1.54900 * 111.00779 * 236.09668 * 2 1 3 5 5 N 1.47428 * 104.83449 * 204.91826 * 4 2 1 6 6 C 1.34778 * 125.64881 * 204.16728 * 5 4 2 7 7 O 1.21290 * 120.00098 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00002 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47048 * 179.97438 * 8 6 5 10 10 C 1.38300 * 119.81531 * 269.72370 * 9 8 6 11 11 C 1.38393 * 119.82944 * 179.76736 * 10 9 8 12 12 C 1.37685 * 119.91164 * 0.52991 * 11 10 9 13 13 C 1.38895 * 120.80512 * 359.72531 * 12 11 10 14 14 C 1.37942 * 119.81068 * 89.99667 * 9 8 6 15 15 N 1.39539 * 110.22816 * 180.02562 * 13 12 11 16 16 C 1.34373 * 112.24439 * 359.97438 * 15 13 12 17 17 O 1.21288 * 126.44105 * 180.02562 * 16 15 13 18 18 C 1.51127 * 132.85148 * 179.72136 * 12 11 10 19 19 C 1.47017 * 108.70522 * 24.12515 * 5 4 2 20 20 C 1.54332 * 107.27026 * 358.94225 * 19 5 4 21 21 H 1.09001 * 110.71417 * 96.34429 * 20 19 5 22 22 N 1.46499 * 110.72184 * 219.44253 * 20 19 5 23 23 C 1.36935 * 119.99938 * 273.54809 * 22 20 19 24 24 H 1.07999 * 120.00083 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99632 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99535 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 0.27829 * 25 23 22 28 28 H 1.48501 * 109.46922 * 269.71949 * 27 25 23 29 29 H 1.48496 * 109.47354 * 29.72145 * 27 25 23 30 30 H 1.48501 * 109.47428 * 149.72253 * 27 25 23 31 31 H 1.08998 * 109.47394 * 296.10152 * 1 2 3 32 32 H 1.08996 * 109.46838 * 56.10000 * 1 2 3 33 33 H 1.09000 * 109.46980 * 176.09928 * 1 2 3 34 34 H 1.09005 * 110.37160 * 86.07690 * 4 2 1 35 35 H 1.09004 * 110.45997 * 323.79921 * 4 2 1 36 36 H 1.08996 * 109.46778 * 299.99650 * 8 6 5 37 37 H 1.09001 * 109.47033 * 59.99784 * 8 6 5 38 38 H 1.08002 * 120.08651 * 0.02562 * 10 9 8 39 39 H 1.07997 * 120.04529 * 180.25016 * 11 10 9 40 40 H 1.08001 * 119.93335 * 359.97438 * 14 9 8 41 41 H 0.96995 * 123.87646 * 179.97438 * 15 13 12 42 42 H 1.09006 * 110.51737 * 298.65075 * 18 12 11 43 43 H 1.09002 * 110.51260 * 61.35279 * 18 12 11 44 44 H 1.09002 * 109.88548 * 239.53190 * 19 5 4 45 45 H 1.08995 * 110.01292 * 118.42889 * 19 5 4 46 46 H 0.97004 * 119.99469 * 93.54877 * 22 20 19 47 47 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 3.4272 -1.2430 -0.7732 6 6 4.4482 -1.5602 -1.5938 7 8 4.3016 -1.4980 -2.7962 8 6 5.7719 -1.9922 -1.0174 9 6 6.7352 -2.2877 -2.1380 10 6 6.8122 -3.5664 -2.6594 11 6 7.6933 -3.8370 -3.6917 12 6 8.4974 -2.8357 -4.1883 13 6 8.4333 -1.5489 -3.6696 14 6 7.5393 -1.2827 -2.6341 15 7 9.3369 -0.7164 -4.3312 16 6 10.0246 -1.3678 -5.2843 17 8 10.8721 -0.8948 -6.0117 18 6 9.5430 -2.8030 -5.2790 19 6 3.4675 -1.2741 0.6961 20 6 2.0861 -0.8078 1.2024 21 1 1.4479 -1.6632 1.4240 22 7 2.2286 0.0497 2.3816 23 6 2.3033 -0.5091 3.6295 24 1 2.2576 -1.5820 3.7443 25 6 2.4388 0.3034 4.7468 26 7 2.5101 -0.2337 5.9463 27 14 2.5114 2.1594 4.5486 28 1 3.9245 2.5846 4.3829 29 1 1.7301 2.5604 3.3512 30 1 1.9373 2.8089 5.7544 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1560 -0.1720 -2.0837 35 1 1.4525 -1.6704 -1.4042 36 1 6.1740 -1.1943 -0.3931 37 1 5.6303 -2.8891 -0.4144 38 1 6.1833 -4.3507 -2.2648 39 1 7.7533 -4.8332 -4.1042 40 1 7.4763 -0.2876 -2.2189 41 1 9.4550 0.2243 -4.1265 42 1 10.3634 -3.4806 -5.0422 43 1 9.0996 -3.0603 -6.2410 44 1 4.2426 -0.5996 1.0601 45 1 3.6662 -2.2882 1.0425 46 1 2.2699 1.0133 2.2783 47 1 2.6044 0.3341 6.7271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001054764708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:05 Heat of formation + Delta-G solvation = -20.398424 kcal Electronic energy + Delta-G solvation = -28982.230477 eV Core-core repulsion = 24937.122112 eV Total energy + Delta-G solvation = -4045.108365 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.71146 -40.09102 -38.81743 -37.70861 -36.09575 -34.26423 -33.22801 -32.60922 -31.16136 -30.49998 -29.90905 -27.98916 -27.19135 -25.44025 -23.84817 -23.06248 -21.87800 -21.56110 -20.90568 -20.26488 -19.11306 -18.01144 -17.65194 -17.00452 -16.88840 -16.32588 -16.18417 -15.99400 -15.34817 -15.02878 -14.72303 -14.41109 -14.30061 -14.02005 -13.55215 -13.49195 -13.34795 -13.27474 -13.02560 -12.78995 -12.75243 -12.61439 -12.31213 -12.21717 -11.90489 -11.78008 -11.52491 -11.27654 -11.17438 -11.04330 -10.87710 -10.72602 -10.53943 -10.41831 -10.11884 -9.85252 -9.71934 -9.11514 -8.98457 -8.47074 -8.29273 -7.48173 -5.91881 -3.30227 0.87535 1.04133 2.13423 2.66597 2.70318 3.06269 3.26688 3.29461 3.36241 3.54278 3.77609 4.07834 4.45223 4.47823 4.52277 4.55791 4.82849 4.94848 4.95244 4.99138 4.99802 5.03540 5.12404 5.18429 5.36336 5.38106 5.43841 5.50954 5.58708 5.61233 5.64008 5.69912 5.79691 5.81335 6.00887 6.04945 6.07974 6.19826 6.22666 6.27861 6.36441 6.38726 6.42201 6.43982 6.67213 6.72755 7.61171 7.64836 7.82022 8.23744 8.26748 9.03020 9.75366 9.93280 11.25606 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015311 B = 0.002228 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.307875 B =12563.937895 C =13224.075825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 H 0.081 0.919 4 C 0.115 3.885 5 N -0.614 5.614 6 C 0.529 3.471 7 O -0.545 6.545 8 C -0.102 4.102 9 C -0.024 4.024 10 C -0.121 4.121 11 C -0.065 4.065 12 C -0.146 4.146 13 C 0.138 3.862 14 C -0.120 4.120 15 N -0.659 5.659 16 C 0.528 3.472 17 O -0.510 6.510 18 C -0.113 4.113 19 C 0.072 3.928 20 C 0.182 3.818 21 H 0.075 0.925 22 N -0.736 5.736 23 C -0.254 4.254 24 H 0.093 0.907 25 C 0.011 3.989 26 N -0.928 5.928 27 Si 0.882 3.118 28 H -0.284 1.284 29 H -0.276 1.276 30 H -0.290 1.290 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.056 0.944 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.130 0.870 39 H 0.130 0.870 40 H 0.125 0.875 41 H 0.413 0.587 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.364 0.636 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.809 -5.819 -18.460 20.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.137 4.137 3 H 0.099 0.901 4 C -0.008 4.008 5 N -0.348 5.348 6 C 0.317 3.683 7 O -0.423 6.423 8 C -0.142 4.142 9 C -0.025 4.025 10 C -0.140 4.140 11 C -0.083 4.083 12 C -0.149 4.149 13 C 0.042 3.958 14 C -0.141 4.141 15 N -0.302 5.302 16 C 0.317 3.683 17 O -0.385 6.385 18 C -0.152 4.152 19 C -0.054 4.054 20 C 0.071 3.929 21 H 0.093 0.907 22 N -0.378 5.378 23 C -0.383 4.383 24 H 0.110 0.890 25 C -0.186 4.186 26 N -0.574 5.574 27 Si 0.712 3.288 28 H -0.210 1.210 29 H -0.202 1.202 30 H -0.216 1.216 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.148 0.852 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.251 0.749 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.197 0.803 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.307 -5.782 -19.380 21.864 hybrid contribution 0.118 1.920 0.375 1.960 sum 8.426 -3.862 -19.005 21.145 Atomic orbital electron populations 1.21625 0.93668 1.01932 1.02067 1.22658 0.96548 0.99617 0.94864 0.90089 1.22238 0.82867 0.98150 0.97532 1.48549 1.12031 1.66173 1.08078 1.20070 0.84594 0.77410 0.86185 1.90708 1.83174 1.53905 1.14512 1.20688 0.91855 1.04635 0.96975 1.19011 0.94573 0.93051 0.95874 1.20938 0.99311 0.96455 0.97292 1.20191 0.94333 0.98129 0.95684 1.19748 1.01221 0.93718 1.00228 1.18010 0.92655 0.90192 0.94969 1.20169 0.96933 0.99924 0.97093 1.43732 1.37783 1.13338 1.35338 1.20634 0.79989 0.89143 0.78573 1.90818 1.31362 1.74434 1.41908 1.21032 0.98772 0.95386 1.00036 1.23275 1.02933 1.01786 0.77423 1.21216 0.91918 0.93819 0.85997 0.90703 1.42715 1.88699 1.04049 1.02318 1.19048 1.43609 0.93976 0.81678 0.88963 1.24681 1.01428 0.97378 0.95125 1.69697 1.56056 1.34351 0.97340 0.86594 0.77900 0.87163 0.77097 1.21022 1.20218 1.21624 0.91450 0.93046 0.92465 0.90947 0.91449 0.87592 0.87357 0.85232 0.85227 0.85670 0.74916 0.85983 0.85986 0.90791 0.91600 0.80251 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.31 37.16 0.35 -1.31 16 2 C -0.12 -1.59 3.25 -88.48 -0.29 -1.88 16 3 H 0.08 1.15 8.00 -51.92 -0.42 0.73 16 4 C 0.11 1.50 6.37 -2.53 -0.02 1.48 16 5 N -0.61 -8.41 3.33 -170.52 -0.57 -8.98 16 6 C 0.53 7.27 7.84 -10.98 -0.09 7.19 16 7 O -0.55 -9.14 16.29 5.55 0.09 -9.05 16 8 C -0.10 -1.07 5.01 -29.03 -0.15 -1.21 16 9 C -0.02 -0.25 4.36 -104.71 -0.46 -0.71 16 10 C -0.12 -1.14 9.71 -39.50 -0.38 -1.52 16 11 C -0.06 -0.54 10.04 -39.73 -0.40 -0.94 16 12 C -0.15 -1.31 6.35 -104.37 -0.66 -1.97 16 13 C 0.14 1.37 7.11 -83.69 -0.60 0.78 16 14 C -0.12 -1.24 9.72 -39.27 -0.38 -1.62 16 15 N -0.66 -6.08 5.88 -9.70 -0.06 -6.14 16 16 C 0.53 5.42 8.71 -10.83 -0.09 5.33 16 17 O -0.51 -6.91 18.03 5.55 0.10 -6.81 16 18 C -0.11 -0.84 6.88 -28.49 -0.20 -1.04 16 19 C 0.07 1.04 6.24 -3.06 -0.02 1.02 16 20 C 0.18 2.97 3.06 -66.09 -0.20 2.76 16 21 H 0.08 1.26 8.02 -51.93 -0.42 0.84 16 22 N -0.74 -15.20 4.98 -51.65 -0.26 -15.46 16 23 C -0.25 -6.42 10.46 -15.06 -0.16 -6.58 16 24 H 0.09 2.51 8.06 -52.49 -0.42 2.08 16 25 C 0.01 0.29 5.50 -17.43 -0.10 0.19 16 26 N -0.93 -27.34 13.97 55.49 0.78 -26.57 16 27 Si 0.88 20.54 27.74 -169.99 -4.71 15.83 16 28 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 29 H -0.28 -6.01 6.52 56.52 0.37 -5.64 16 30 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.07 0.96 8.04 -51.93 -0.42 0.54 16 35 H 0.07 0.83 7.99 -51.93 -0.41 0.41 16 36 H 0.11 1.01 8.08 -51.93 -0.42 0.59 16 37 H 0.11 0.96 8.08 -51.93 -0.42 0.54 16 38 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 39 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.13 1.16 8.06 -52.49 -0.42 0.73 16 41 H 0.41 3.11 8.96 -40.82 -0.37 2.74 16 42 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.12 0.74 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.14 8.03 -51.93 -0.42 0.72 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.36 7.52 5.57 -40.82 -0.23 7.29 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 390.96 15.07 5.89 5.89 Total: -1.00 -33.13 390.96 -9.48 -42.61 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: -6.91 Total: 8.71 kcal Atomic # 6 Polarization: 3.80 SS G_CDS: -3.83 Total: -0.03 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.11 Total: -57.14 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.19 Total: -15.86 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.71 Total: 15.83 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.13 -9.48 -42.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054764708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.210 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds