Wall clock time and date at job start Wed Apr 1 2020 02:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09011 * 110.91631 * 2 1 4 4 C 1.54900 * 111.00779 * 236.09668 * 2 1 3 5 5 N 1.47428 * 104.83449 * 204.91826 * 4 2 1 6 6 C 1.34778 * 125.64881 * 204.16728 * 5 4 2 7 7 O 1.21290 * 120.00098 * 359.97438 * 6 5 4 8 8 C 1.50702 * 120.00002 * 179.97438 * 6 5 4 9 9 C 1.50700 * 109.47048 * 179.97438 * 8 6 5 10 10 C 1.38300 * 119.81531 * 269.72370 * 9 8 6 11 11 C 1.38393 * 119.82944 * 179.76736 * 10 9 8 12 12 C 1.37685 * 119.91164 * 0.52991 * 11 10 9 13 13 C 1.38895 * 120.80512 * 359.72531 * 12 11 10 14 14 C 1.37942 * 119.81068 * 89.99667 * 9 8 6 15 15 N 1.39539 * 110.22816 * 180.02562 * 13 12 11 16 16 C 1.34373 * 112.24439 * 359.97438 * 15 13 12 17 17 O 1.21288 * 126.44105 * 180.02562 * 16 15 13 18 18 C 1.51127 * 132.85148 * 179.72136 * 12 11 10 19 19 C 1.47017 * 108.70522 * 24.12515 * 5 4 2 20 20 C 1.54332 * 107.27026 * 358.94225 * 19 5 4 21 21 H 1.09001 * 110.71417 * 96.34429 * 20 19 5 22 22 N 1.46499 * 110.72184 * 219.44253 * 20 19 5 23 23 C 1.36935 * 119.99938 * 273.54809 * 22 20 19 24 24 H 1.07999 * 120.00083 * 0.02562 * 23 22 20 25 25 C 1.38812 * 119.99632 * 179.97438 * 23 22 20 26 26 N 1.31624 * 119.99535 * 179.97438 * 25 23 22 27 27 Si 1.86796 * 120.00187 * 0.27829 * 25 23 22 28 28 H 1.48501 * 109.46922 * 269.71949 * 27 25 23 29 29 H 1.48496 * 109.47354 * 29.72145 * 27 25 23 30 30 H 1.48501 * 109.47428 * 149.72253 * 27 25 23 31 31 H 1.08998 * 109.47394 * 296.10152 * 1 2 3 32 32 H 1.08996 * 109.46838 * 56.10000 * 1 2 3 33 33 H 1.09000 * 109.46980 * 176.09928 * 1 2 3 34 34 H 1.09005 * 110.37160 * 86.07690 * 4 2 1 35 35 H 1.09004 * 110.45997 * 323.79921 * 4 2 1 36 36 H 1.08996 * 109.46778 * 299.99650 * 8 6 5 37 37 H 1.09001 * 109.47033 * 59.99784 * 8 6 5 38 38 H 1.08002 * 120.08651 * 0.02562 * 10 9 8 39 39 H 1.07997 * 120.04529 * 180.25016 * 11 10 9 40 40 H 1.08001 * 119.93335 * 359.97438 * 14 9 8 41 41 H 0.96995 * 123.87646 * 179.97438 * 15 13 12 42 42 H 1.09006 * 110.51737 * 298.65075 * 18 12 11 43 43 H 1.09002 * 110.51260 * 61.35279 * 18 12 11 44 44 H 1.09002 * 109.88548 * 239.53190 * 19 5 4 45 45 H 1.08995 * 110.01292 * 118.42889 * 19 5 4 46 46 H 0.97004 * 119.99469 * 93.54877 * 22 20 19 47 47 H 0.97005 * 119.99717 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0183 0.0000 4 6 2.0853 -0.8066 -1.2002 5 7 3.4272 -1.2430 -0.7732 6 6 4.4482 -1.5602 -1.5938 7 8 4.3016 -1.4980 -2.7962 8 6 5.7719 -1.9922 -1.0174 9 6 6.7352 -2.2877 -2.1380 10 6 6.8122 -3.5664 -2.6594 11 6 7.6933 -3.8370 -3.6917 12 6 8.4974 -2.8357 -4.1883 13 6 8.4333 -1.5489 -3.6696 14 6 7.5393 -1.2827 -2.6341 15 7 9.3369 -0.7164 -4.3312 16 6 10.0246 -1.3678 -5.2843 17 8 10.8721 -0.8948 -6.0117 18 6 9.5430 -2.8030 -5.2790 19 6 3.4675 -1.2741 0.6961 20 6 2.0861 -0.8078 1.2024 21 1 1.4479 -1.6632 1.4240 22 7 2.2286 0.0497 2.3816 23 6 2.3033 -0.5091 3.6295 24 1 2.2576 -1.5820 3.7443 25 6 2.4388 0.3034 4.7468 26 7 2.5101 -0.2337 5.9463 27 14 2.5114 2.1594 4.5486 28 1 3.9245 2.5846 4.3829 29 1 1.7301 2.5604 3.3512 30 1 1.9373 2.8089 5.7544 31 1 -0.3634 0.4521 0.9228 32 1 -0.3633 0.5732 -0.8530 33 1 -0.3633 -1.0253 -0.0699 34 1 2.1560 -0.1720 -2.0837 35 1 1.4525 -1.6704 -1.4042 36 1 6.1740 -1.1943 -0.3931 37 1 5.6303 -2.8891 -0.4144 38 1 6.1833 -4.3507 -2.2648 39 1 7.7533 -4.8332 -4.1042 40 1 7.4763 -0.2876 -2.2189 41 1 9.4550 0.2243 -4.1265 42 1 10.3634 -3.4806 -5.0422 43 1 9.0996 -3.0603 -6.2410 44 1 4.2426 -0.5996 1.0601 45 1 3.6662 -2.2882 1.0425 46 1 2.2699 1.0133 2.2783 47 1 2.6044 0.3341 6.7271 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001054764708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:08:04 Heat of formation + Delta-G solvation = -41.888842 kcal Electronic energy + Delta-G solvation = -28983.162371 eV Core-core repulsion = 24937.122112 eV Total energy + Delta-G solvation = -4046.040259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.43754 -41.18579 -39.69733 -38.85272 -36.92306 -35.90785 -34.14432 -33.73311 -32.86603 -31.29519 -30.60019 -29.40754 -28.08684 -26.36191 -25.52334 -23.76766 -22.95718 -22.48318 -21.79793 -21.55182 -20.14781 -19.48169 -18.78266 -18.08336 -17.73591 -17.29134 -17.06318 -16.84957 -16.49586 -16.18828 -15.98514 -15.58153 -15.16008 -14.90560 -14.82136 -14.71226 -14.60031 -14.24638 -14.14108 -13.80336 -13.73935 -13.58651 -13.33078 -13.15566 -13.00278 -12.90547 -12.88899 -12.71859 -12.20665 -12.14183 -11.92294 -11.89017 -11.81507 -11.77295 -11.41820 -11.35710 -11.03222 -10.87258 -9.70326 -9.61859 -9.33292 -9.02460 -7.98710 -5.33279 0.15245 0.33239 1.38085 1.42134 1.43314 1.50944 1.63189 1.94322 2.05066 2.51233 2.77940 3.09617 3.31762 3.40234 3.42614 3.64861 3.72648 3.86728 3.87364 3.95906 4.12775 4.15458 4.33317 4.36709 4.45146 4.46939 4.49291 4.53132 4.61021 4.64663 4.70499 4.86039 4.91276 4.93306 4.97395 5.10459 5.11748 5.13609 5.26722 5.31187 5.40095 5.49246 5.51743 5.65489 5.72447 5.81974 6.02966 6.24875 6.54362 6.86821 7.09745 7.15947 7.84870 8.02772 9.22021 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.015311 B = 0.002228 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.307875 B =12563.937895 C =13224.075825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.106 4.106 3 H 0.079 0.921 4 C 0.117 3.883 5 N -0.614 5.614 6 C 0.529 3.471 7 O -0.576 6.576 8 C -0.097 4.097 9 C -0.041 4.041 10 C -0.128 4.128 11 C -0.063 4.063 12 C -0.147 4.147 13 C 0.121 3.879 14 C -0.133 4.133 15 N -0.656 5.656 16 C 0.522 3.478 17 O -0.551 6.551 18 C -0.105 4.105 19 C 0.084 3.916 20 C 0.173 3.827 21 H 0.070 0.930 22 N -0.738 5.738 23 C -0.225 4.225 24 H 0.066 0.934 25 C -0.059 4.059 26 N -0.981 5.981 27 Si 0.946 3.054 28 H -0.281 1.281 29 H -0.250 1.250 30 H -0.303 1.303 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.079 0.921 36 H 0.114 0.886 37 H 0.126 0.874 38 H 0.144 0.856 39 H 0.160 0.840 40 H 0.127 0.873 41 H 0.417 0.583 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.068 0.932 45 H 0.074 0.926 46 H 0.367 0.633 47 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.755 -6.301 -20.384 22.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.126 4.126 3 H 0.097 0.903 4 C -0.006 4.006 5 N -0.348 5.348 6 C 0.319 3.681 7 O -0.456 6.456 8 C -0.136 4.136 9 C -0.042 4.042 10 C -0.147 4.147 11 C -0.082 4.082 12 C -0.150 4.150 13 C 0.025 3.975 14 C -0.153 4.153 15 N -0.298 5.298 16 C 0.312 3.688 17 O -0.429 6.429 18 C -0.143 4.143 19 C -0.042 4.042 20 C 0.063 3.937 21 H 0.088 0.912 22 N -0.380 5.380 23 C -0.356 4.356 24 H 0.084 0.916 25 C -0.250 4.250 26 N -0.631 5.631 27 Si 0.774 3.226 28 H -0.208 1.208 29 H -0.175 1.175 30 H -0.230 1.230 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.132 0.868 37 H 0.144 0.856 38 H 0.162 0.838 39 H 0.177 0.823 40 H 0.145 0.855 41 H 0.255 0.745 42 H 0.164 0.836 43 H 0.159 0.841 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.200 0.800 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.228 -6.270 -21.354 23.727 hybrid contribution 0.091 1.966 0.905 2.166 sum 8.319 -4.304 -20.449 22.492 Atomic orbital electron populations 1.21610 0.92453 1.02782 1.02147 1.22576 0.97500 0.99064 0.93432 0.90276 1.22268 0.82751 0.98506 0.97081 1.48571 1.12480 1.66152 1.07557 1.20583 0.85296 0.76515 0.85721 1.90692 1.83764 1.55281 1.15840 1.20707 0.90071 1.05597 0.97222 1.19118 0.94976 0.93729 0.96414 1.21227 0.99609 0.96395 0.97461 1.20516 0.93326 0.99297 0.95012 1.20024 1.01310 0.93387 1.00241 1.18154 0.93049 0.90925 0.95405 1.20294 0.97323 1.00232 0.97489 1.43761 1.37374 1.13696 1.34971 1.21100 0.79349 0.90353 0.77967 1.90794 1.33209 1.75441 1.43474 1.21091 0.99055 0.93714 1.00459 1.22943 1.01240 1.02023 0.77974 1.21410 0.93076 0.93664 0.85558 0.91171 1.42665 1.88797 1.04595 1.01985 1.19009 1.40314 0.92830 0.83419 0.91614 1.25403 1.02802 1.01956 0.94878 1.69868 1.59143 1.35850 0.98242 0.85551 0.78091 0.81647 0.77314 1.20757 1.17498 1.22985 0.93083 0.90917 0.91610 0.90849 0.90319 0.86765 0.85597 0.83830 0.82284 0.85477 0.74463 0.83614 0.84089 0.91380 0.90775 0.79968 0.93489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.31 71.98 0.67 -2.25 16 2 C -0.11 -2.65 3.25 -9.40 -0.03 -2.68 16 3 H 0.08 2.05 8.00 -2.38 -0.02 2.03 16 4 C 0.12 2.77 6.37 86.85 0.55 3.32 16 5 N -0.61 -15.59 3.33 -811.78 -2.70 -18.29 16 6 C 0.53 13.63 7.84 87.66 0.69 14.32 16 7 O -0.58 -18.50 16.29 -3.06 -0.05 -18.55 16 8 C -0.10 -1.85 5.01 29.10 0.15 -1.71 16 9 C -0.04 -0.80 4.36 -19.92 -0.09 -0.89 16 10 C -0.13 -2.12 9.71 22.32 0.22 -1.91 16 11 C -0.06 -0.88 10.04 22.18 0.22 -0.66 16 12 C -0.15 -2.31 6.35 -19.70 -0.13 -2.43 16 13 C 0.12 2.27 7.11 38.34 0.27 2.54 16 14 C -0.13 -2.62 9.72 22.47 0.22 -2.40 16 15 N -0.66 -11.75 5.88 -303.21 -1.78 -13.53 16 16 C 0.52 10.30 8.71 87.94 0.77 11.06 16 17 O -0.55 -14.88 18.03 -3.05 -0.06 -14.94 16 18 C -0.10 -1.32 6.88 29.46 0.20 -1.11 16 19 C 0.08 2.29 6.24 86.73 0.54 2.83 16 20 C 0.17 5.36 3.06 46.18 0.14 5.50 16 21 H 0.07 2.27 8.02 -2.39 -0.02 2.25 16 22 N -0.74 -29.56 4.98 -317.31 -1.58 -31.14 16 23 C -0.22 -11.38 10.46 84.03 0.88 -10.50 16 24 H 0.07 3.64 8.06 -2.91 -0.02 3.61 16 25 C -0.06 -3.19 5.50 84.86 0.47 -2.73 16 26 N -0.98 -59.25 13.97 21.65 0.30 -58.95 16 27 Si 0.95 42.32 27.74 68.60 1.90 44.22 16 28 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 29 H -0.25 -9.98 6.52 99.48 0.65 -9.33 16 30 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 31 H 0.05 1.30 8.14 -2.39 -0.02 1.29 16 32 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.06 1.33 8.08 -2.39 -0.02 1.31 16 34 H 0.07 1.78 8.04 -2.38 -0.02 1.76 16 35 H 0.08 1.72 7.99 -2.38 -0.02 1.70 16 36 H 0.11 1.99 8.08 -2.39 -0.02 1.97 16 37 H 0.13 1.94 8.08 -2.39 -0.02 1.92 16 38 H 0.14 1.89 8.06 -2.91 -0.02 1.86 16 39 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 40 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 41 H 0.42 6.30 8.96 -92.71 -0.83 5.47 16 42 H 0.15 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.07 1.97 8.03 -2.39 -0.02 1.96 16 45 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 46 H 0.37 14.39 5.57 -92.71 -0.52 13.87 16 47 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 Total: -1.00 -72.42 390.96 1.38 -71.04 By element: Atomic # 1 Polarization: 30.23 SS G_CDS: -0.40 Total: 29.82 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 5.74 Total: 10.31 kcal Atomic # 7 Polarization: -116.15 SS G_CDS: -5.76 Total: -121.91 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.10 Total: -33.49 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 1.90 Total: 44.22 kcal Total: -72.42 1.38 -71.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001054764708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.150 kcal (2) G-P(sol) polarization free energy of solvation -72.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds