Wall clock time and date at job start Wed Apr 1 2020 02:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81402 * 102.99965 * 2 1 4 4 H 1.09009 * 109.46921 * 54.99913 * 3 2 1 5 5 C 1.52996 * 109.47343 * 294.99966 * 3 2 1 6 6 C 1.53005 * 109.47154 * 174.99867 * 3 2 1 7 7 C 1.50698 * 109.46885 * 295.00193 * 6 3 2 8 8 O 1.21283 * 120.00211 * 359.97438 * 7 6 3 9 9 N 1.34784 * 119.99775 * 180.02562 * 7 6 3 10 10 C 1.46491 * 120.00096 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47360 * 186.88795 * 10 9 7 12 12 H 1.09004 * 110.72463 * 302.76529 * 11 10 9 13 13 C 1.54938 * 110.66923 * 179.67341 * 11 10 9 14 14 C 1.54596 * 102.92055 * 204.14775 * 13 11 10 15 15 C 1.53992 * 105.14147 * 21.95583 * 14 13 11 16 16 N 1.47906 * 107.05621 * 1.22451 * 15 14 13 17 17 C 1.46897 * 110.99856 * 214.15071 * 16 15 14 18 18 C 1.50698 * 109.46826 * 63.68444 * 17 16 15 19 19 O 1.21289 * 120.00450 * 352.96755 * 18 17 16 20 20 N 1.34784 * 119.99936 * 172.96837 * 18 17 16 21 21 C 1.37102 * 119.99782 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99847 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99752 * 179.72394 * 21 20 18 24 24 N 1.31415 * 119.99946 * 0.27414 * 23 21 20 25 25 Si 1.86800 * 120.00042 * 180.27410 * 23 21 20 26 26 H 1.48497 * 109.47026 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46908 * 119.99912 * 25 23 21 28 28 H 1.48496 * 109.47092 * 239.99965 * 25 23 21 29 29 H 1.09000 * 109.46963 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47098 * 300.00193 * 1 2 3 31 31 H 1.08998 * 109.46837 * 60.00140 * 1 2 3 32 32 H 1.09003 * 109.46843 * 59.99893 * 5 3 2 33 33 H 1.08998 * 109.47208 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.47098 * 300.00318 * 5 3 2 35 35 H 1.09000 * 109.46518 * 175.00208 * 6 3 2 36 36 H 1.08996 * 109.47096 * 55.00058 * 6 3 2 37 37 H 0.97001 * 119.99816 * 359.97438 * 9 7 6 38 38 H 1.09011 * 109.47031 * 66.88677 * 10 9 7 39 39 H 1.09006 * 109.47323 * 306.89036 * 10 9 7 40 40 H 1.09008 * 110.72275 * 85.79020 * 13 11 10 41 41 H 1.08995 * 110.87695 * 322.58158 * 13 11 10 42 42 H 1.09003 * 110.30967 * 263.04168 * 14 13 11 43 43 H 1.08999 * 110.30568 * 140.87177 * 14 13 11 44 44 H 1.08992 * 109.92292 * 241.87292 * 15 14 13 45 45 H 1.09005 * 110.07896 * 120.66329 * 15 14 13 46 46 H 1.08993 * 109.47407 * 303.68322 * 17 16 15 47 47 H 1.09007 * 109.47231 * 183.67806 * 17 16 15 48 48 H 0.96999 * 119.99644 * 359.97438 * 20 18 17 49 49 H 0.97001 * 119.99757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2542 0.8419 5 6 1.7428 2.4016 -1.3073 6 6 3.7370 1.9412 0.1258 7 6 4.1919 1.4270 1.4673 8 8 3.3839 0.9673 2.2463 9 7 5.4965 1.4789 1.8018 10 6 5.9387 0.9795 3.1060 11 6 7.4199 1.3083 3.3026 12 1 8.0194 0.8841 2.4971 13 6 7.9152 0.7988 4.6795 14 6 9.1289 1.7113 4.9696 15 6 8.9066 2.9642 4.1022 16 7 7.6238 2.7769 3.3903 17 6 7.6706 3.3828 2.0529 18 6 8.7076 2.6769 1.2178 19 8 9.4326 1.8472 1.7248 20 7 8.8295 2.9676 -0.0927 21 6 9.7732 2.3257 -0.8523 22 1 10.4193 1.5876 -0.4005 23 6 9.8950 2.6213 -2.2046 24 7 9.1092 3.5199 -2.7541 25 14 11.1757 1.7413 -3.2413 26 1 11.9272 0.7830 -2.3915 27 1 10.5016 1.0043 -4.3403 28 1 12.1159 2.7364 -3.8164 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.6636 2.2779 -1.3968 33 1 1.9876 3.4638 -1.3071 34 1 2.2354 1.9150 -2.1491 35 1 3.9901 2.9977 0.0367 36 1 4.2340 1.3805 -0.6658 37 1 6.1426 1.8469 1.1789 38 1 5.7975 -0.1006 3.1485 39 1 5.3535 1.4537 3.8941 40 1 8.2235 -0.2448 4.6164 41 1 7.1457 0.9268 5.4407 42 1 10.0546 1.2121 4.6829 43 1 9.1551 1.9817 6.0251 44 1 9.7189 3.0668 3.3828 45 1 8.8551 3.8517 4.7330 46 1 7.9313 4.4375 2.1407 47 1 6.6947 3.2881 1.5767 48 1 8.2494 3.6309 -0.4982 49 1 9.1944 3.7264 -3.6980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753100708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:27 Heat of formation + Delta-G solvation = -63.338694 kcal Electronic energy + Delta-G solvation = -29180.226270 eV Core-core repulsion = 25268.699826 eV Total energy + Delta-G solvation = -3911.526444 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.15252 -39.14646 -37.23900 -34.79475 -34.25875 -34.04769 -32.00572 -31.27758 -30.14943 -29.11861 -27.72743 -26.70905 -24.81515 -24.04141 -22.13362 -20.88833 -20.50410 -19.90764 -19.19794 -17.99515 -17.09492 -16.65896 -16.37861 -15.77679 -15.55371 -15.21956 -15.00592 -14.57843 -14.46689 -14.22155 -14.03463 -13.92311 -13.85521 -13.64339 -13.36150 -12.89863 -12.84629 -12.53425 -12.20554 -12.14346 -11.96012 -11.75471 -11.57048 -11.45663 -11.34030 -11.23116 -11.15192 -10.98253 -10.81185 -10.70451 -10.46042 -10.36908 -10.23647 -9.81385 -9.57925 -9.51038 -9.28148 -8.73789 -8.11872 -7.62216 -7.45964 -6.57540 -3.98978 1.69391 2.58629 2.90281 3.04953 3.18603 3.24632 3.38483 3.65648 4.05123 4.30130 4.53963 4.66692 4.82940 4.96761 5.02153 5.05205 5.06333 5.10315 5.11865 5.16835 5.30196 5.37882 5.44637 5.54153 5.56381 5.61148 5.69400 5.74314 5.79074 5.84915 5.89301 5.98138 5.98424 6.01974 6.08633 6.14053 6.29347 6.35347 6.57341 6.62534 6.73428 7.20395 7.30568 7.40522 7.71941 7.88230 8.40774 8.46161 9.00467 9.34158 9.83400 10.58540 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.007733 B = 0.003935 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3619.862287 B = 7114.408425 C = 9924.726874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.238 6.238 3 C -0.040 4.040 4 H 0.092 0.908 5 C -0.149 4.149 6 C -0.129 4.129 7 C 0.508 3.492 8 O -0.527 6.527 9 N -0.727 5.727 10 C 0.137 3.863 11 C 0.029 3.971 12 H 0.108 0.892 13 C -0.107 4.107 14 C -0.118 4.118 15 C 0.035 3.965 16 N -0.489 5.489 17 C 0.022 3.978 18 C 0.398 3.602 19 O -0.586 6.586 20 N -0.552 5.552 21 C -0.304 4.304 22 H 0.104 0.896 23 C 0.027 3.973 24 N -0.895 5.895 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.280 1.280 28 H -0.281 1.281 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.402 0.598 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.392 0.608 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.068 -0.237 5.809 13.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.012 6.012 3 C -0.169 4.169 4 H 0.111 0.889 5 C -0.208 4.208 6 C -0.170 4.170 7 C 0.293 3.707 8 O -0.403 6.403 9 N -0.382 5.382 10 C 0.013 3.987 11 C -0.079 4.079 12 H 0.125 0.875 13 C -0.146 4.146 14 C -0.156 4.156 15 C -0.093 4.093 16 N -0.212 5.212 17 C -0.111 4.111 18 C 0.183 3.817 19 O -0.473 6.473 20 N -0.187 5.187 21 C -0.434 4.434 22 H 0.122 0.878 23 C -0.175 4.175 24 N -0.535 5.535 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.206 1.206 28 H -0.206 1.206 29 H 0.115 0.885 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.122 0.878 37 H 0.239 0.761 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.105 0.895 48 H 0.226 0.774 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.937 -1.666 6.796 13.836 hybrid contribution 0.471 1.002 -1.733 2.056 sum -11.466 -0.664 5.063 12.551 Atomic orbital electron populations 1.23364 0.95457 1.06039 1.04458 1.87016 1.06003 1.10496 1.97718 1.22844 0.97853 0.94888 1.01335 0.88917 1.22119 1.01273 1.01157 0.96257 1.21567 0.94499 1.04079 0.96853 1.20439 0.82436 0.78997 0.88818 1.90718 1.52803 1.44917 1.51858 1.46357 1.08467 1.64107 1.19289 1.21327 0.94247 0.98412 0.84704 1.23489 0.94797 0.89363 1.00221 0.87475 1.22296 0.97523 0.98985 0.95794 1.22211 0.98500 0.96012 0.98901 1.22830 0.92027 0.97358 0.97094 1.65099 1.31246 1.11020 1.13873 1.22370 0.98620 0.99923 0.90173 1.20965 0.89010 0.88006 0.83681 1.90464 1.47895 1.37367 1.71616 1.42095 1.32675 1.36564 1.07402 1.19763 1.12858 1.20213 0.90520 0.87811 1.25282 0.98229 0.96781 0.97250 1.69605 1.38361 1.31942 1.13594 0.85822 0.80052 0.79142 0.79505 1.19204 1.20591 1.20645 0.88491 0.90709 0.90908 0.92402 0.91394 0.91036 0.87379 0.87841 0.76058 0.91821 0.90943 0.91358 0.91387 0.91421 0.92057 0.91134 0.91802 0.89082 0.89457 0.77432 0.91691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 10.45 101.05 1.06 -0.12 16 2 S -0.24 -3.15 20.24 -107.50 -2.18 -5.32 16 3 C -0.04 -0.46 2.44 -26.73 -0.07 -0.53 16 4 H 0.09 1.12 7.96 -51.92 -0.41 0.70 16 5 C -0.15 -1.35 9.10 37.16 0.34 -1.02 16 6 C -0.13 -1.58 5.17 -27.88 -0.14 -1.72 16 7 C 0.51 7.70 7.54 -10.98 -0.08 7.62 16 8 O -0.53 -9.35 14.77 5.55 0.08 -9.27 16 9 N -0.73 -11.01 4.68 -60.29 -0.28 -11.29 16 10 C 0.14 2.09 5.41 -4.05 -0.02 2.07 16 11 C 0.03 0.47 2.18 -65.79 -0.14 0.33 16 12 H 0.11 2.09 5.05 -51.93 -0.26 1.83 16 13 C -0.11 -1.49 6.50 -24.87 -0.16 -1.65 16 14 C -0.12 -1.67 6.93 -25.38 -0.18 -1.84 16 15 C 0.03 0.55 6.01 -2.75 -0.02 0.53 16 16 N -0.49 -7.79 5.23 -224.07 -1.17 -8.96 16 17 C 0.02 0.36 5.32 -4.98 -0.03 0.33 16 18 C 0.40 8.25 6.34 -10.98 -0.07 8.18 16 19 O -0.59 -13.72 11.37 5.55 0.06 -13.66 16 20 N -0.55 -12.54 5.29 -10.96 -0.06 -12.60 16 21 C -0.30 -7.81 9.68 -14.93 -0.14 -7.95 16 22 H 0.10 2.84 7.16 -52.49 -0.38 2.46 16 23 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 24 N -0.89 -22.63 13.05 55.50 0.72 -21.91 16 25 Si 0.93 19.97 29.55 -169.99 -5.02 14.95 16 26 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 27 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 28 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 29 H 0.10 0.82 8.14 -51.92 -0.42 0.40 16 30 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 31 H 0.07 0.58 7.14 -51.93 -0.37 0.21 16 32 H 0.06 0.47 6.92 -51.93 -0.36 0.11 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.40 6.18 5.48 -40.82 -0.22 5.96 16 38 H 0.06 0.97 8.14 -51.92 -0.42 0.55 16 39 H 0.07 1.13 8.11 -51.93 -0.42 0.71 16 40 H 0.07 0.90 8.14 -51.92 -0.42 0.48 16 41 H 0.07 0.86 8.06 -51.93 -0.42 0.44 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.07 1.32 5.79 -51.93 -0.30 1.01 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 47 H 0.09 1.30 5.30 -51.93 -0.28 1.03 16 48 H 0.39 8.54 7.90 -40.82 -0.32 8.22 16 49 H 0.27 6.57 8.31 -40.82 -0.34 6.24 16 LS Contribution 394.95 15.07 5.95 5.95 Total: -1.00 -29.41 394.95 -9.59 -39.01 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: -7.95 Total: 18.29 kcal Atomic # 6 Polarization: 4.57 SS G_CDS: 0.25 Total: 4.82 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.79 Total: -54.76 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.15 Total: -22.93 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -5.02 Total: 14.95 kcal Atomic # 16 Polarization: -3.15 SS G_CDS: -2.18 Total: -5.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -29.41 -9.59 -39.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753100708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.331 kcal (2) G-P(sol) polarization free energy of solvation -29.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds