Wall clock time and date at job start Wed Apr 1 2020 02:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81402 * 102.99965 * 2 1 4 4 H 1.09009 * 109.46921 * 54.99913 * 3 2 1 5 5 C 1.52996 * 109.47343 * 294.99966 * 3 2 1 6 6 C 1.53005 * 109.47154 * 174.99867 * 3 2 1 7 7 C 1.50698 * 109.46885 * 295.00193 * 6 3 2 8 8 O 1.21283 * 120.00211 * 359.97438 * 7 6 3 9 9 N 1.34784 * 119.99775 * 180.02562 * 7 6 3 10 10 C 1.46491 * 120.00096 * 179.97438 * 9 7 6 11 11 C 1.52995 * 109.47360 * 186.88795 * 10 9 7 12 12 H 1.09004 * 110.72463 * 302.76529 * 11 10 9 13 13 C 1.54938 * 110.66923 * 179.67341 * 11 10 9 14 14 C 1.54596 * 102.92055 * 204.14775 * 13 11 10 15 15 C 1.53992 * 105.14147 * 21.95583 * 14 13 11 16 16 N 1.47906 * 107.05621 * 1.22451 * 15 14 13 17 17 C 1.46897 * 110.99856 * 214.15071 * 16 15 14 18 18 C 1.50698 * 109.46826 * 63.68444 * 17 16 15 19 19 O 1.21289 * 120.00450 * 352.96755 * 18 17 16 20 20 N 1.34784 * 119.99936 * 172.96837 * 18 17 16 21 21 C 1.37102 * 119.99782 * 179.97438 * 20 18 17 22 22 H 1.08000 * 119.99847 * 359.97438 * 21 20 18 23 23 C 1.38952 * 119.99752 * 179.72394 * 21 20 18 24 24 N 1.31415 * 119.99946 * 0.27414 * 23 21 20 25 25 Si 1.86800 * 120.00042 * 180.27410 * 23 21 20 26 26 H 1.48497 * 109.47026 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46908 * 119.99912 * 25 23 21 28 28 H 1.48496 * 109.47092 * 239.99965 * 25 23 21 29 29 H 1.09000 * 109.46963 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47098 * 300.00193 * 1 2 3 31 31 H 1.08998 * 109.46837 * 60.00140 * 1 2 3 32 32 H 1.09003 * 109.46843 * 59.99893 * 5 3 2 33 33 H 1.08998 * 109.47208 * 179.97438 * 5 3 2 34 34 H 1.08998 * 109.47098 * 300.00318 * 5 3 2 35 35 H 1.09000 * 109.46518 * 175.00208 * 6 3 2 36 36 H 1.08996 * 109.47096 * 55.00058 * 6 3 2 37 37 H 0.97001 * 119.99816 * 359.97438 * 9 7 6 38 38 H 1.09011 * 109.47031 * 66.88677 * 10 9 7 39 39 H 1.09006 * 109.47323 * 306.89036 * 10 9 7 40 40 H 1.09008 * 110.72275 * 85.79020 * 13 11 10 41 41 H 1.08995 * 110.87695 * 322.58158 * 13 11 10 42 42 H 1.09003 * 110.30967 * 263.04168 * 14 13 11 43 43 H 1.08999 * 110.30568 * 140.87177 * 14 13 11 44 44 H 1.08992 * 109.92292 * 241.87292 * 15 14 13 45 45 H 1.09005 * 110.07896 * 120.66329 * 15 14 13 46 46 H 1.08993 * 109.47407 * 303.68322 * 17 16 15 47 47 H 1.09007 * 109.47231 * 183.67806 * 17 16 15 48 48 H 0.96999 * 119.99644 * 359.97438 * 20 18 17 49 49 H 0.97001 * 119.99757 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7294 2.2542 0.8419 5 6 1.7428 2.4016 -1.3073 6 6 3.7370 1.9412 0.1258 7 6 4.1919 1.4270 1.4673 8 8 3.3839 0.9673 2.2463 9 7 5.4965 1.4789 1.8018 10 6 5.9387 0.9795 3.1060 11 6 7.4199 1.3083 3.3026 12 1 8.0194 0.8841 2.4971 13 6 7.9152 0.7988 4.6795 14 6 9.1289 1.7113 4.9696 15 6 8.9066 2.9642 4.1022 16 7 7.6238 2.7769 3.3903 17 6 7.6706 3.3828 2.0529 18 6 8.7076 2.6769 1.2178 19 8 9.4326 1.8472 1.7248 20 7 8.8295 2.9676 -0.0927 21 6 9.7732 2.3257 -0.8523 22 1 10.4193 1.5876 -0.4005 23 6 9.8950 2.6213 -2.2046 24 7 9.1092 3.5199 -2.7541 25 14 11.1757 1.7413 -3.2413 26 1 11.9272 0.7830 -2.3915 27 1 10.5016 1.0043 -4.3403 28 1 12.1159 2.7364 -3.8164 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 0.6636 2.2779 -1.3968 33 1 1.9876 3.4638 -1.3071 34 1 2.2354 1.9150 -2.1491 35 1 3.9901 2.9977 0.0367 36 1 4.2340 1.3805 -0.6658 37 1 6.1426 1.8469 1.1789 38 1 5.7975 -0.1006 3.1485 39 1 5.3535 1.4537 3.8941 40 1 8.2235 -0.2448 4.6164 41 1 7.1457 0.9268 5.4407 42 1 10.0546 1.2121 4.6829 43 1 9.1551 1.9817 6.0251 44 1 9.7189 3.0668 3.3828 45 1 8.8551 3.8517 4.7330 46 1 7.9313 4.4375 2.1407 47 1 6.6947 3.2881 1.5767 48 1 8.2494 3.6309 -0.4982 49 1 9.1944 3.7264 -3.6980 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753100708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:58:26 Heat of formation + Delta-G solvation = -83.474506 kcal Electronic energy + Delta-G solvation = -29181.099424 eV Core-core repulsion = 25268.699826 eV Total energy + Delta-G solvation = -3912.399598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.54610 -40.46416 -38.77431 -36.01099 -35.73692 -35.36220 -33.52473 -32.95429 -31.31043 -29.97246 -28.64729 -28.24522 -26.28920 -25.45375 -23.09495 -22.08907 -21.90525 -21.18121 -20.73780 -19.80044 -18.41313 -17.71528 -17.63726 -17.22768 -16.82923 -16.54605 -16.34255 -16.12699 -15.87743 -15.54921 -15.43440 -15.05506 -15.04975 -14.59843 -14.44831 -14.22338 -13.81372 -13.64922 -13.54877 -13.34799 -13.18092 -13.04548 -12.88364 -12.80065 -12.49423 -12.40528 -12.34379 -12.24312 -12.14563 -12.11904 -12.08573 -11.94410 -11.63736 -11.16319 -10.90189 -10.84151 -10.66349 -10.00460 -9.96238 -9.14226 -8.47300 -8.46612 -5.94738 0.81735 1.33852 1.42192 1.53697 1.70385 1.73562 1.97679 2.22455 2.28270 2.99069 3.19713 3.20501 3.59055 3.67470 3.78954 3.82706 4.05181 4.19646 4.23014 4.29390 4.33932 4.37012 4.38536 4.42803 4.48480 4.53188 4.57847 4.63941 4.64788 4.75120 4.79803 4.82116 4.88233 4.98120 4.99372 5.09657 5.14393 5.26590 5.27419 5.41870 5.42196 5.48155 5.88919 5.90529 6.04910 6.48948 6.57316 7.11748 7.25250 7.53456 8.07359 8.68671 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.007733 B = 0.003935 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3619.862287 B = 7114.408425 C = 9924.726874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 S -0.316 6.316 3 C -0.025 4.025 4 H 0.088 0.912 5 C -0.143 4.143 6 C -0.127 4.127 7 C 0.506 3.494 8 O -0.554 6.554 9 N -0.728 5.728 10 C 0.144 3.856 11 C 0.033 3.967 12 H 0.071 0.929 13 C -0.105 4.105 14 C -0.115 4.115 15 C 0.032 3.968 16 N -0.481 5.481 17 C 0.031 3.969 18 C 0.406 3.594 19 O -0.612 6.612 20 N -0.563 5.563 21 C -0.329 4.329 22 H 0.077 0.923 23 C -0.005 4.005 24 N -0.912 5.912 25 Si 0.983 3.017 26 H -0.276 1.276 27 H -0.273 1.273 28 H -0.273 1.273 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.133 0.867 36 H 0.100 0.900 37 H 0.400 0.600 38 H 0.060 0.940 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.051 0.949 43 H 0.090 0.910 44 H 0.037 0.963 45 H 0.086 0.914 46 H 0.110 0.890 47 H 0.106 0.894 48 H 0.397 0.603 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.338 0.793 6.075 14.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.091 6.091 3 C -0.154 4.154 4 H 0.106 0.894 5 C -0.202 4.202 6 C -0.168 4.168 7 C 0.293 3.707 8 O -0.432 6.432 9 N -0.382 5.382 10 C 0.020 3.980 11 C -0.076 4.076 12 H 0.089 0.911 13 C -0.143 4.143 14 C -0.153 4.153 15 C -0.095 4.095 16 N -0.203 5.203 17 C -0.102 4.102 18 C 0.193 3.807 19 O -0.499 6.499 20 N -0.199 5.199 21 C -0.459 4.459 22 H 0.095 0.905 23 C -0.206 4.206 24 N -0.552 5.552 25 Si 0.808 3.192 26 H -0.201 1.201 27 H -0.198 1.198 28 H -0.198 1.198 29 H 0.124 0.876 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.151 0.849 36 H 0.119 0.881 37 H 0.237 0.763 38 H 0.078 0.922 39 H 0.093 0.907 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.055 0.945 45 H 0.104 0.896 46 H 0.128 0.872 47 H 0.124 0.876 48 H 0.231 0.769 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.213 -0.623 7.065 14.996 hybrid contribution 0.844 0.655 -1.712 2.018 sum -12.369 0.032 5.354 13.478 Atomic orbital electron populations 1.23369 0.91603 1.07005 1.05507 1.87249 1.10471 1.13431 1.97908 1.22824 0.97114 0.92981 1.02498 0.89407 1.22085 1.01948 1.01697 0.94470 1.21647 0.95138 1.05290 0.94725 1.20937 0.81960 0.78294 0.89547 1.90701 1.53373 1.46119 1.53000 1.46412 1.08620 1.64017 1.19189 1.21233 0.93635 0.98219 0.84925 1.23351 0.94620 0.89294 1.00318 0.91130 1.22338 0.97890 0.99171 0.94910 1.22210 0.97800 0.95096 1.00216 1.22877 0.90651 0.99191 0.96824 1.65174 1.31141 1.10863 1.13147 1.22424 0.97852 1.00275 0.89644 1.21790 0.88746 0.86912 0.83240 1.90467 1.49019 1.38361 1.72095 1.42087 1.32799 1.37108 1.07954 1.19619 1.13964 1.20863 0.91460 0.90465 1.25882 0.99699 0.97310 0.97674 1.69648 1.39109 1.32475 1.13994 0.85011 0.78096 0.78136 0.77990 1.20105 1.19806 1.19846 0.87621 0.90356 0.89042 0.91179 0.89776 0.91493 0.84887 0.88146 0.76256 0.92203 0.90731 0.90939 0.89400 0.92994 0.89188 0.94470 0.89571 0.87218 0.87613 0.76941 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.85 10.45 113.37 1.19 -0.66 16 2 S -0.32 -8.24 20.24 -56.49 -1.14 -9.39 16 3 C -0.03 -0.55 2.44 30.59 0.07 -0.47 16 4 H 0.09 2.00 7.96 -2.39 -0.02 1.98 16 5 C -0.14 -2.29 9.10 71.98 0.66 -1.63 16 6 C -0.13 -2.97 5.17 29.85 0.15 -2.82 16 7 C 0.51 15.06 7.54 87.66 0.66 15.72 16 8 O -0.55 -19.51 14.77 -3.04 -0.04 -19.56 16 9 N -0.73 -21.70 4.68 -463.06 -2.17 -23.87 16 10 C 0.14 4.31 5.41 86.38 0.47 4.78 16 11 C 0.03 1.03 2.18 45.26 0.10 1.13 16 12 H 0.07 2.81 5.05 -2.38 -0.01 2.80 16 13 C -0.10 -2.76 6.50 31.80 0.21 -2.56 16 14 C -0.12 -3.09 6.93 31.47 0.22 -2.87 16 15 C 0.03 0.98 6.01 86.44 0.52 1.50 16 16 N -0.48 -14.68 5.23 -862.81 -4.51 -19.19 16 17 C 0.03 0.98 5.32 85.56 0.46 1.43 16 18 C 0.41 17.06 6.34 87.66 0.56 17.61 16 19 O -0.61 -29.49 11.37 -3.06 -0.03 -29.52 16 20 N -0.56 -25.96 5.29 -306.97 -1.62 -27.59 16 21 C -0.33 -17.33 9.68 84.04 0.81 -16.51 16 22 H 0.08 4.41 7.16 -2.91 -0.02 4.39 16 23 C 0.00 -0.24 5.50 84.93 0.47 0.23 16 24 N -0.91 -45.89 13.05 21.66 0.28 -45.61 16 25 Si 0.98 41.11 29.55 68.60 2.03 43.14 16 26 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 27 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 29 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.24 7.14 -2.39 -0.02 1.22 16 32 H 0.07 0.95 6.92 -2.39 -0.02 0.94 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.13 2.40 8.14 -2.39 -0.02 2.39 16 36 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 37 H 0.40 12.17 5.48 -92.71 -0.51 11.66 16 38 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.07 2.23 8.11 -2.38 -0.02 2.21 16 40 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 41 H 0.09 2.00 8.06 -2.39 -0.02 1.98 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.53 16 43 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.04 1.39 5.79 -2.39 -0.01 1.37 16 45 H 0.09 2.23 8.14 -2.38 -0.02 2.21 16 46 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 47 H 0.11 3.01 5.30 -2.38 -0.01 2.99 16 48 H 0.40 17.33 7.90 -92.71 -0.73 16.60 16 49 H 0.28 13.16 8.31 -92.71 -0.77 12.39 16 Total: -1.00 -64.68 394.95 -0.96 -65.64 By element: Atomic # 1 Polarization: 51.36 SS G_CDS: -0.27 Total: 51.08 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 6.53 Total: 14.86 kcal Atomic # 7 Polarization: -108.23 SS G_CDS: -8.02 Total: -116.25 kcal Atomic # 8 Polarization: -49.00 SS G_CDS: -0.08 Total: -49.08 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.14 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.14 Total: -9.39 kcal Total: -64.68 -0.96 -65.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753100708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.839 kcal (2) G-P(sol) polarization free energy of solvation -64.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds