Wall clock time and date at job start Wed Apr 1 2020 03:06:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47066 * 2 1 4 4 N 1.46897 * 109.47109 * 120.00439 * 2 1 3 5 5 C 1.46906 * 110.99811 * 274.99721 * 4 2 1 6 6 C 1.53001 * 109.46975 * 180.02562 * 5 4 2 7 7 N 1.46501 * 109.46742 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99518 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00122 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.99452 * 179.97438 * 8 7 6 11 11 S 1.81009 * 109.46875 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99990 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99826 * 359.97438 * 12 11 10 14 14 C 1.38795 * 119.99866 * 180.02562 * 12 11 10 15 15 N 1.31632 * 119.99957 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00100 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46821 * 90.00643 * 16 14 12 18 18 H 1.48496 * 109.47488 * 210.00497 * 16 14 12 19 19 H 1.48498 * 109.47389 * 330.00510 * 16 14 12 20 20 C 1.50706 * 109.46832 * 239.99954 * 2 1 3 21 21 O 1.21273 * 120.00309 * 258.66154 * 20 2 1 22 22 N 1.34782 * 119.99460 * 78.66024 * 20 2 1 23 23 C 1.46918 * 120.63311 * 4.79087 * 22 20 2 24 24 C 1.53623 * 108.54491 * 126.36652 * 23 22 20 25 25 C 1.53046 * 109.24282 * 54.85416 * 24 23 22 26 26 C 1.53040 * 109.53548 * 298.51304 * 25 24 23 27 27 C 1.46928 * 120.62566 * 185.06318 * 22 20 2 28 28 H 1.09001 * 109.47214 * 64.20017 * 1 2 3 29 29 H 1.08996 * 109.46906 * 304.19972 * 1 2 3 30 30 H 1.09006 * 109.46996 * 184.19787 * 1 2 3 31 31 H 1.00899 * 111.00017 * 151.04883 * 4 2 1 32 32 H 1.09002 * 109.46718 * 300.00440 * 5 4 2 33 33 H 1.08999 * 109.47096 * 59.99915 * 5 4 2 34 34 H 1.09000 * 109.47144 * 300.00289 * 6 5 4 35 35 H 1.09000 * 109.46750 * 60.00426 * 6 5 4 36 36 H 0.97004 * 120.00178 * 359.97438 * 7 6 5 37 37 H 1.09000 * 109.47635 * 299.99658 * 10 8 7 38 38 H 1.09000 * 109.47117 * 60.00321 * 10 8 7 39 39 H 0.97000 * 120.00287 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.58405 * 246.19736 * 23 22 20 41 41 H 1.08998 * 109.59065 * 6.62096 * 23 22 20 42 42 H 1.08997 * 109.63540 * 294.86190 * 24 23 22 43 43 H 1.09001 * 109.43715 * 174.72273 * 24 23 22 44 44 H 1.08997 * 109.46106 * 178.49337 * 25 24 23 45 45 H 1.09003 * 109.46014 * 58.53112 * 25 24 23 46 46 H 1.09002 * 109.49607 * 301.41207 * 26 25 24 47 47 H 1.09007 * 109.49467 * 181.31391 * 26 25 24 48 48 H 1.08999 * 109.58695 * 353.38275 * 27 22 20 49 49 H 1.08998 * 109.58124 * 113.80178 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5963 -0.5330 3.5741 7 7 2.6583 0.3794 4.7186 8 6 3.0856 -0.0691 5.9156 9 8 3.4183 -1.2282 6.0453 10 6 3.1500 0.8696 7.0927 11 16 3.7577 -0.0242 8.5446 12 6 3.7324 1.2739 9.7358 13 1 3.4038 2.2623 9.4504 14 6 4.1357 1.0264 11.0406 15 7 4.1164 1.9961 11.9306 16 14 4.7047 -0.6830 11.5340 17 1 6.1702 -0.7970 11.3228 18 1 4.3917 -0.9145 12.9670 19 1 4.0047 -1.6964 10.7045 20 6 2.0323 -0.7105 -1.2305 21 8 2.4291 -1.8537 -1.1512 22 7 2.0405 -0.0752 -2.4192 23 6 1.6622 1.3414 -2.5136 24 6 2.7919 2.1024 -3.2239 25 6 3.0780 1.4374 -4.5723 26 6 3.5379 -0.0043 -4.3446 27 6 2.4221 -0.7878 -3.6461 28 1 -0.3634 0.4473 -0.9252 29 1 -0.3633 0.5776 0.8499 30 1 -0.3633 -1.0250 0.0752 31 1 2.9173 -1.1205 1.0286 32 1 2.7589 1.0461 2.1181 33 1 1.0871 0.6163 2.5525 34 1 1.9203 -1.3569 3.8029 35 1 3.5918 -0.9263 3.3681 36 1 2.3926 1.3066 4.6147 37 1 3.8258 1.6937 6.8638 38 1 2.1545 1.2626 7.2988 39 1 4.3979 1.8231 12.8426 40 1 0.7388 1.4357 -3.0850 41 1 1.5183 1.7486 -1.5129 42 1 3.6917 2.0801 -2.6091 43 1 2.4869 3.1363 -3.3856 44 1 3.8607 1.9906 -5.0913 45 1 2.1711 1.4381 -5.1772 46 1 4.4307 -0.0069 -3.7192 47 1 3.7638 -0.4700 -5.3040 48 1 2.7796 -1.7858 -3.3928 49 1 1.5594 -0.8635 -4.3079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123799430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:24 Heat of formation + Delta-G solvation = -77.932433 kcal Electronic energy + Delta-G solvation = -26871.132540 eV Core-core repulsion = 22958.973264 eV Total energy + Delta-G solvation = -3912.159276 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.91150 -39.29568 -38.15519 -36.81208 -34.64684 -33.52644 -32.43136 -31.98196 -31.17318 -29.58829 -27.25363 -26.29715 -25.59374 -24.32152 -23.40982 -22.27666 -21.13212 -20.43319 -19.44967 -18.07186 -17.69643 -17.05290 -16.38042 -16.25792 -15.90255 -15.74450 -15.27122 -15.03444 -14.96923 -14.81399 -14.64733 -14.30656 -14.15045 -13.89868 -13.64290 -13.32780 -13.27963 -12.94161 -12.85609 -12.78098 -12.68780 -12.42938 -12.07090 -11.89168 -11.77394 -11.57577 -11.48296 -11.31665 -11.25313 -11.18276 -10.99554 -10.59981 -10.08209 -9.84710 -9.53252 -9.20195 -9.01525 -8.96145 -8.93037 -8.48757 -6.90754 -6.28209 -3.99866 2.12267 2.33884 2.75211 2.99417 3.22014 3.34574 3.52349 3.57281 3.85922 3.94638 4.07620 4.22647 4.29240 4.34472 4.45107 4.46657 4.56265 4.65516 4.69870 4.76517 4.82080 4.88174 4.88828 5.10989 5.11488 5.12632 5.16621 5.19479 5.23722 5.28702 5.32547 5.36264 5.42601 5.49047 5.69091 5.70148 5.76104 5.79326 5.84776 5.94815 6.01529 6.38464 6.53223 6.81152 6.92336 7.60179 7.67553 7.94810 8.42025 8.50326 9.18135 10.80961 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.028199 B = 0.001519 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.695043 B =18434.615728 C =18664.452960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.070 3.930 3 H 0.068 0.932 4 N -0.666 5.666 5 C 0.050 3.950 6 C 0.123 3.877 7 N -0.737 5.737 8 C 0.531 3.469 9 O -0.517 6.517 10 C -0.123 4.123 11 S -0.142 6.142 12 C -0.522 4.522 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.881 5.881 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C 0.513 3.487 21 O -0.524 6.524 22 N -0.613 5.613 23 C 0.103 3.897 24 C -0.137 4.137 25 C -0.121 4.121 26 C -0.135 4.135 27 C 0.110 3.890 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.355 0.645 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.399 0.601 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.271 0.729 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.077 0.923 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.093 0.907 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.052 3.012 -37.133 37.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.043 4.043 3 H 0.086 0.914 4 N -0.301 5.301 5 C -0.080 4.080 6 C -0.001 4.001 7 N -0.392 5.392 8 C 0.316 3.684 9 O -0.391 6.391 10 C -0.274 4.274 11 S 0.085 5.915 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.517 5.517 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 C 0.301 3.699 21 O -0.398 6.398 22 N -0.348 5.348 23 C -0.020 4.020 24 C -0.175 4.175 25 C -0.158 4.158 26 C -0.174 4.174 27 C -0.012 4.012 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.176 0.824 32 H 0.056 0.944 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.115 0.885 38 H 0.116 0.884 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.106 0.894 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.112 0.888 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.855 0.234 -36.515 37.154 hybrid contribution 0.549 1.988 -0.071 2.063 sum -6.306 2.221 -36.586 37.192 Atomic orbital electron populations 1.21752 0.91698 1.03944 1.02108 1.21527 0.98078 0.96297 0.88395 0.91434 1.60218 1.35303 1.31943 1.02669 1.22187 1.01486 0.93913 0.90400 1.21124 1.01846 0.93016 0.84163 1.45844 1.69727 1.13944 1.09679 1.20266 0.76156 0.88765 0.83171 1.90713 1.46523 1.18218 1.83653 1.23275 1.05690 1.01606 0.96847 1.84822 1.86287 1.18287 1.02133 1.22321 1.51553 0.97095 0.95974 0.89392 1.24708 0.93858 0.97510 0.95203 1.69938 1.45844 1.32133 1.03804 0.86734 0.80722 0.85160 0.79243 1.19217 1.19930 1.15888 1.20694 0.77798 0.86967 0.84473 1.90733 1.46299 1.17779 1.85027 1.48103 1.67880 1.11485 1.07312 1.21958 0.97735 0.80255 1.02077 1.22012 0.99041 0.99395 0.97078 1.21522 1.01673 0.95738 0.96899 1.21918 0.98589 0.95864 1.00980 1.21613 0.97510 0.97075 0.85026 0.92068 0.91184 0.90872 0.82387 0.94434 0.89956 0.90398 0.91642 0.76780 0.88522 0.88411 0.91952 0.90922 0.89425 0.91367 0.90422 0.91495 0.91633 0.91448 0.90578 0.88828 0.91433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.21 37.16 0.34 -0.49 16 2 C 0.07 0.50 2.18 -68.86 -0.15 0.35 16 3 H 0.07 0.35 6.06 -51.93 -0.31 0.04 16 4 N -0.67 -5.99 6.10 -107.95 -0.66 -6.65 16 5 C 0.05 0.39 5.60 -3.82 -0.02 0.37 16 6 C 0.12 1.40 5.93 -4.04 -0.02 1.38 16 7 N -0.74 -9.20 5.56 -60.29 -0.33 -9.54 16 8 C 0.53 9.49 7.85 -10.98 -0.09 9.40 16 9 O -0.52 -11.43 15.86 5.56 0.09 -11.34 16 10 C -0.12 -2.38 6.16 36.01 0.22 -2.16 16 11 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 12 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 13 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 14 C 0.10 2.81 5.50 -17.43 -0.10 2.72 16 15 N -0.88 -26.61 13.97 55.49 0.78 -25.84 16 16 Si 0.86 21.94 27.74 -169.99 -4.71 17.23 16 17 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 18 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.23 -6.03 6.74 56.52 0.38 -5.65 16 20 C 0.51 4.58 6.80 -10.98 -0.07 4.51 16 21 O -0.52 -6.78 15.44 5.56 0.09 -6.70 16 22 N -0.61 -3.88 2.97 -172.51 -0.51 -4.39 16 23 C 0.10 0.36 5.64 -3.49 -0.02 0.34 16 24 C -0.14 -0.43 6.10 -26.38 -0.16 -0.59 16 25 C -0.12 -0.39 5.88 -26.69 -0.16 -0.55 16 26 C -0.14 -0.59 6.08 -26.61 -0.16 -0.75 16 27 C 0.11 0.64 6.44 -3.71 -0.02 0.62 16 28 H 0.06 0.27 7.40 -51.93 -0.38 -0.12 16 29 H 0.07 0.38 7.56 -51.93 -0.39 -0.02 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.36 3.59 7.79 -39.29 -0.31 3.28 16 32 H 0.04 0.26 8.06 -51.93 -0.42 -0.16 16 33 H 0.08 0.58 7.52 -51.93 -0.39 0.19 16 34 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.40 3.66 8.47 -40.82 -0.35 3.31 16 37 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 38 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 39 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 40 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 41 H 0.09 0.24 5.36 -51.93 -0.28 -0.04 16 42 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 45 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 46 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 47 H 0.08 0.25 8.14 -51.92 -0.42 -0.17 16 48 H 0.09 0.73 7.00 -51.93 -0.36 0.37 16 49 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 LS Contribution 403.93 15.07 6.09 6.09 Total: -1.00 -36.53 403.93 -9.54 -46.08 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -8.27 Total: 0.30 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -0.10 Total: 0.38 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.73 Total: -46.42 kcal Atomic # 8 Polarization: -18.21 SS G_CDS: 0.17 Total: -18.04 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.71 Total: 17.23 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.53 -9.54 -46.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.855 kcal (2) G-P(sol) polarization free energy of solvation -36.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds