Wall clock time and date at job start Wed Apr 1 2020 03:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47066 * 2 1 4 4 N 1.46897 * 109.47109 * 120.00439 * 2 1 3 5 5 C 1.46906 * 110.99811 * 274.99721 * 4 2 1 6 6 C 1.53001 * 109.46975 * 180.02562 * 5 4 2 7 7 N 1.46501 * 109.46742 * 180.02562 * 6 5 4 8 8 C 1.34778 * 119.99518 * 180.02562 * 7 6 5 9 9 O 1.21277 * 120.00122 * 359.97438 * 8 7 6 10 10 C 1.50700 * 119.99452 * 179.97438 * 8 7 6 11 11 S 1.81009 * 109.46875 * 179.97438 * 10 8 7 12 12 C 1.76202 * 99.99990 * 180.02562 * 11 10 8 13 13 H 1.07996 * 119.99826 * 359.97438 * 12 11 10 14 14 C 1.38795 * 119.99866 * 180.02562 * 12 11 10 15 15 N 1.31632 * 119.99957 * 180.02562 * 14 12 11 16 16 Si 1.86794 * 120.00100 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.46821 * 90.00643 * 16 14 12 18 18 H 1.48496 * 109.47488 * 210.00497 * 16 14 12 19 19 H 1.48498 * 109.47389 * 330.00510 * 16 14 12 20 20 C 1.50706 * 109.46832 * 239.99954 * 2 1 3 21 21 O 1.21273 * 120.00309 * 258.66154 * 20 2 1 22 22 N 1.34782 * 119.99460 * 78.66024 * 20 2 1 23 23 C 1.46918 * 120.63311 * 4.79087 * 22 20 2 24 24 C 1.53623 * 108.54491 * 126.36652 * 23 22 20 25 25 C 1.53046 * 109.24282 * 54.85416 * 24 23 22 26 26 C 1.53040 * 109.53548 * 298.51304 * 25 24 23 27 27 C 1.46928 * 120.62566 * 185.06318 * 22 20 2 28 28 H 1.09001 * 109.47214 * 64.20017 * 1 2 3 29 29 H 1.08996 * 109.46906 * 304.19972 * 1 2 3 30 30 H 1.09006 * 109.46996 * 184.19787 * 1 2 3 31 31 H 1.00899 * 111.00017 * 151.04883 * 4 2 1 32 32 H 1.09002 * 109.46718 * 300.00440 * 5 4 2 33 33 H 1.08999 * 109.47096 * 59.99915 * 5 4 2 34 34 H 1.09000 * 109.47144 * 300.00289 * 6 5 4 35 35 H 1.09000 * 109.46750 * 60.00426 * 6 5 4 36 36 H 0.97004 * 120.00178 * 359.97438 * 7 6 5 37 37 H 1.09000 * 109.47635 * 299.99658 * 10 8 7 38 38 H 1.09000 * 109.47117 * 60.00321 * 10 8 7 39 39 H 0.97000 * 120.00287 * 179.97438 * 15 14 12 40 40 H 1.08998 * 109.58405 * 246.19736 * 23 22 20 41 41 H 1.08998 * 109.59065 * 6.62096 * 23 22 20 42 42 H 1.08997 * 109.63540 * 294.86190 * 24 23 22 43 43 H 1.09001 * 109.43715 * 174.72273 * 24 23 22 44 44 H 1.08997 * 109.46106 * 178.49337 * 25 24 23 45 45 H 1.09003 * 109.46014 * 58.53112 * 25 24 23 46 46 H 1.09002 * 109.49607 * 301.41207 * 26 25 24 47 47 H 1.09007 * 109.49467 * 181.31391 * 26 25 24 48 48 H 1.08999 * 109.58695 * 353.38275 * 27 22 20 49 49 H 1.08998 * 109.58124 * 113.80178 * 27 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5963 -0.5330 3.5741 7 7 2.6583 0.3794 4.7186 8 6 3.0856 -0.0691 5.9156 9 8 3.4183 -1.2282 6.0453 10 6 3.1500 0.8696 7.0927 11 16 3.7577 -0.0242 8.5446 12 6 3.7324 1.2739 9.7358 13 1 3.4038 2.2623 9.4504 14 6 4.1357 1.0264 11.0406 15 7 4.1164 1.9961 11.9306 16 14 4.7047 -0.6830 11.5340 17 1 6.1702 -0.7970 11.3228 18 1 4.3917 -0.9145 12.9670 19 1 4.0047 -1.6964 10.7045 20 6 2.0323 -0.7105 -1.2305 21 8 2.4291 -1.8537 -1.1512 22 7 2.0405 -0.0752 -2.4192 23 6 1.6622 1.3414 -2.5136 24 6 2.7919 2.1024 -3.2239 25 6 3.0780 1.4374 -4.5723 26 6 3.5379 -0.0043 -4.3446 27 6 2.4221 -0.7878 -3.6461 28 1 -0.3634 0.4473 -0.9252 29 1 -0.3633 0.5776 0.8499 30 1 -0.3633 -1.0250 0.0752 31 1 2.9173 -1.1205 1.0286 32 1 2.7589 1.0461 2.1181 33 1 1.0871 0.6163 2.5525 34 1 1.9203 -1.3569 3.8029 35 1 3.5918 -0.9263 3.3681 36 1 2.3926 1.3066 4.6147 37 1 3.8258 1.6937 6.8638 38 1 2.1545 1.2626 7.2988 39 1 4.3979 1.8231 12.8426 40 1 0.7388 1.4357 -3.0850 41 1 1.5183 1.7486 -1.5129 42 1 3.6917 2.0801 -2.6091 43 1 2.4869 3.1363 -3.3856 44 1 3.8607 1.9906 -5.0913 45 1 2.1711 1.4381 -5.1772 46 1 4.4307 -0.0069 -3.7192 47 1 3.7638 -0.4700 -5.3040 48 1 2.7796 -1.7858 -3.3928 49 1 1.5594 -0.8635 -4.3079 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123799430.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:06:23 Heat of formation + Delta-G solvation = -105.827117 kcal Electronic energy + Delta-G solvation = -26872.342144 eV Core-core repulsion = 22958.973264 eV Total energy + Delta-G solvation = -3913.368880 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.48110 -40.65736 -38.66682 -37.59281 -35.71114 -34.66631 -34.05297 -32.57842 -31.84982 -30.75726 -28.19715 -27.77222 -26.78036 -24.77073 -23.93577 -22.97162 -21.90624 -21.42859 -19.99500 -19.84968 -18.49682 -17.82802 -17.73349 -17.20034 -17.02960 -16.82165 -16.59845 -16.01705 -15.86444 -15.46374 -15.30105 -15.27406 -14.93141 -14.89802 -14.65467 -14.56895 -14.22791 -13.94030 -13.77845 -13.51670 -13.34286 -13.24537 -13.17081 -13.01350 -12.86130 -12.70319 -12.49442 -12.28259 -12.19332 -11.88497 -11.86435 -11.64565 -11.51995 -11.16774 -11.06592 -10.70824 -10.52342 -10.17279 -9.70699 -9.53953 -8.99328 -8.51202 -6.21861 0.98941 1.31477 1.46675 1.48929 1.55112 1.56131 1.84187 2.18293 2.25889 2.71198 2.87197 3.16270 3.36700 3.76671 3.80205 3.91426 3.95307 3.97670 4.02072 4.06991 4.10761 4.23278 4.26361 4.33801 4.46525 4.48142 4.50285 4.59075 4.70542 4.78004 4.86293 4.87880 4.88187 4.91039 4.94608 5.03436 5.13372 5.20244 5.29553 5.35449 5.41896 5.51147 5.71328 5.83416 6.11971 6.14289 6.34199 6.46773 6.94379 7.07219 7.19742 8.60999 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.028199 B = 0.001519 C = 0.001500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.695043 B =18434.615728 C =18664.452960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.074 3.926 3 H 0.096 0.904 4 N -0.684 5.684 5 C 0.063 3.937 6 C 0.125 3.875 7 N -0.708 5.708 8 C 0.534 3.466 9 O -0.565 6.565 10 C -0.109 4.109 11 S -0.181 6.181 12 C -0.528 4.528 13 H 0.065 0.935 14 C 0.047 3.953 15 N -0.916 5.916 16 Si 0.913 3.087 17 H -0.263 1.263 18 H -0.259 1.259 19 H -0.239 1.239 20 C 0.506 3.494 21 O -0.577 6.577 22 N -0.608 5.608 23 C 0.097 3.903 24 C -0.135 4.135 25 C -0.119 4.119 26 C -0.131 4.131 27 C 0.106 3.894 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.346 0.654 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.420 0.580 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.277 0.723 40 H 0.091 0.909 41 H 0.101 0.899 42 H 0.055 0.945 43 H 0.097 0.903 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.049 0.951 47 H 0.085 0.915 48 H 0.066 0.934 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.096 4.761 -39.161 40.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.039 4.039 3 H 0.113 0.887 4 N -0.319 5.319 5 C -0.067 4.067 6 C 0.000 4.000 7 N -0.362 5.362 8 C 0.319 3.681 9 O -0.444 6.444 10 C -0.260 4.260 11 S 0.045 5.955 12 C -0.675 4.675 13 H 0.083 0.917 14 C -0.158 4.158 15 N -0.554 5.554 16 Si 0.735 3.265 17 H -0.188 1.188 18 H -0.183 1.183 19 H -0.162 1.162 20 C 0.294 3.706 21 O -0.456 6.456 22 N -0.341 5.341 23 C -0.025 4.025 24 C -0.173 4.173 25 C -0.157 4.157 26 C -0.169 4.169 27 C -0.016 4.016 28 H 0.099 0.901 29 H 0.101 0.899 30 H 0.067 0.933 31 H 0.165 0.835 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.257 0.743 37 H 0.135 0.865 38 H 0.135 0.865 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.074 0.926 43 H 0.115 0.885 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.068 0.932 47 H 0.104 0.896 48 H 0.084 0.916 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -7.937 2.075 -38.601 39.464 hybrid contribution 0.819 1.536 0.359 1.777 sum -7.118 3.611 -38.243 39.067 Atomic orbital electron populations 1.21754 0.90731 1.02844 1.03777 1.21605 0.98610 0.96988 0.86652 0.88673 1.60216 1.34919 1.32941 1.03800 1.22087 1.02744 0.93487 0.88340 1.21158 1.00985 0.92891 0.84921 1.45533 1.67356 1.15159 1.08191 1.20008 0.76220 0.87685 0.84166 1.90705 1.49155 1.20013 1.84507 1.23258 1.06816 1.01502 0.94406 1.84802 1.87168 1.18813 1.04700 1.22458 1.50936 0.97066 0.97089 0.91706 1.25525 0.94046 1.00905 0.95355 1.70010 1.46932 1.33992 1.04446 0.85891 0.80288 0.80855 0.79492 1.18782 1.18298 1.16248 1.21117 0.77283 0.86492 0.85673 1.90707 1.48898 1.20111 1.85880 1.48234 1.66569 1.12655 1.06639 1.22242 0.98606 0.78292 1.03351 1.22015 0.98369 1.00360 0.96581 1.21532 1.02288 0.94544 0.97315 1.21879 0.97259 0.96912 1.00841 1.21661 0.98597 0.96116 0.85257 0.90061 0.89858 0.93317 0.83462 0.92308 0.88154 0.92246 0.92884 0.74292 0.86537 0.86468 0.91380 0.89093 0.88108 0.92614 0.88469 0.91025 0.90537 0.93195 0.89615 0.91588 0.89907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 9.21 71.98 0.66 -0.63 16 2 C 0.07 0.90 2.18 44.17 0.10 1.00 16 3 H 0.10 0.64 6.06 -2.39 -0.01 0.62 16 4 N -0.68 -11.51 6.10 -495.43 -3.02 -14.54 16 5 C 0.06 0.82 5.60 86.30 0.48 1.30 16 6 C 0.12 2.66 5.93 86.38 0.51 3.18 16 7 N -0.71 -15.93 5.56 -463.06 -2.57 -18.51 16 8 C 0.53 18.31 7.85 87.66 0.69 19.00 16 9 O -0.57 -24.90 15.86 -3.02 -0.05 -24.95 16 10 C -0.11 -4.02 6.16 71.24 0.44 -3.58 16 11 S -0.18 -9.21 18.55 -56.49 -1.05 -10.26 16 12 C -0.53 -30.67 10.04 67.95 0.68 -29.99 16 13 H 0.06 3.94 8.03 -2.91 -0.02 3.91 16 14 C 0.05 2.77 5.50 84.86 0.47 3.24 16 15 N -0.92 -55.65 13.97 21.65 0.30 -55.35 16 16 Si 0.91 45.34 27.74 68.60 1.90 47.24 16 17 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 18 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 19 H -0.24 -11.91 6.74 99.48 0.67 -11.24 16 20 C 0.51 8.83 6.80 87.66 0.60 9.42 16 21 O -0.58 -15.73 15.44 -3.01 -0.05 -15.78 16 22 N -0.61 -6.96 2.97 -818.09 -2.43 -9.39 16 23 C 0.10 0.39 5.64 86.51 0.49 0.88 16 24 C -0.14 -0.48 6.10 30.82 0.19 -0.29 16 25 C -0.12 -0.51 5.88 30.62 0.18 -0.33 16 26 C -0.13 -1.04 6.08 30.67 0.19 -0.86 16 27 C 0.11 1.21 6.44 86.36 0.56 1.76 16 28 H 0.08 0.45 7.40 -2.39 -0.02 0.44 16 29 H 0.08 0.60 7.56 -2.39 -0.02 0.58 16 30 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.35 7.00 7.79 -89.69 -0.70 6.30 16 32 H 0.06 0.56 8.06 -2.39 -0.02 0.54 16 33 H 0.10 1.00 7.52 -2.39 -0.02 0.99 16 34 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.42 6.09 8.47 -92.71 -0.79 5.30 16 37 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 38 H 0.12 3.90 8.14 -2.40 -0.02 3.88 16 39 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16 40 H 0.09 0.10 8.14 -2.39 -0.02 0.09 16 41 H 0.10 0.15 5.36 -2.39 -0.01 0.14 16 42 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 43 H 0.10 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.07 0.27 8.14 -2.39 -0.02 0.25 16 45 H 0.08 0.19 8.14 -2.39 -0.02 0.17 16 46 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.09 0.50 8.14 -2.38 -0.02 0.48 16 48 H 0.07 1.13 7.00 -2.39 -0.02 1.11 16 49 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -82.26 403.93 -1.30 -83.56 By element: Atomic # 1 Polarization: 14.42 SS G_CDS: -0.56 Total: 13.85 kcal Atomic # 6 Polarization: -2.11 SS G_CDS: 6.22 Total: 4.11 kcal Atomic # 7 Polarization: -90.06 SS G_CDS: -7.72 Total: -97.78 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -0.09 Total: -40.72 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Atomic # 16 Polarization: -9.21 SS G_CDS: -1.05 Total: -10.26 kcal Total: -82.26 -1.30 -83.56 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123799430.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.269 kcal (2) G-P(sol) polarization free energy of solvation -82.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds