Wall clock time and date at job start Wed Apr 1 2020 02:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45204 * 109.46751 * 2 1 4 4 C 1.34227 * 116.99337 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00589 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99624 * 180.02562 * 4 3 2 7 7 H 1.08990 * 109.47377 * 59.99521 * 6 4 3 8 8 C 1.52997 * 109.46790 * 299.99191 * 6 4 3 9 9 C 1.50703 * 109.47134 * 175.00193 * 8 6 4 10 10 C 1.38235 * 119.99814 * 269.73174 * 9 8 6 11 11 C 1.38239 * 119.99988 * 179.76192 * 10 9 8 12 12 C 1.38243 * 119.99446 * 0.50913 * 11 10 9 13 13 C 1.38232 * 120.00272 * 359.74541 * 12 11 10 14 14 C 1.38233 * 119.99874 * 90.00262 * 9 8 6 15 15 N 1.46499 * 109.46902 * 179.97438 * 6 4 3 16 16 C 1.39985 * 119.99868 * 274.99547 * 15 6 4 17 17 C 1.40434 * 125.97765 * 0.02562 * 16 15 6 18 18 C 1.35250 * 107.86352 * 179.97438 * 17 16 15 19 19 N 1.34958 * 107.86302 * 0.02562 * 18 17 16 20 20 C 1.46495 * 125.97141 * 179.97438 * 19 18 17 21 21 C 1.50704 * 109.47360 * 124.99652 * 20 19 18 22 22 H 1.08005 * 119.99330 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00300 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00153 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99733 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47209 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46886 * 120.00490 * 25 23 21 28 28 H 1.48500 * 109.47212 * 239.99834 * 25 23 21 29 29 N 1.31227 * 125.97786 * 179.69459 * 16 15 6 30 30 H 1.08997 * 109.46769 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46826 * 300.00020 * 1 2 3 32 32 H 1.09000 * 109.47007 * 59.99839 * 1 2 3 33 33 H 1.08997 * 109.46826 * 239.99980 * 2 1 3 34 34 H 1.08996 * 109.47112 * 119.99657 * 2 1 3 35 35 H 1.08991 * 109.47642 * 295.00297 * 8 6 4 36 36 H 1.09005 * 109.47281 * 55.00365 * 8 6 4 37 37 H 1.07998 * 120.00326 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.00489 * 180.22653 * 11 10 9 39 39 H 1.08002 * 119.99290 * 179.71870 * 12 11 10 40 40 H 1.07997 * 119.99980 * 179.97438 * 13 12 11 41 41 H 1.08000 * 120.00321 * 359.97438 * 14 9 8 42 42 H 0.97005 * 120.00261 * 94.99827 * 15 6 4 43 43 H 1.08002 * 126.06760 * 359.97438 * 17 16 15 44 44 H 1.07997 * 126.06366 * 180.02562 * 18 17 16 45 45 H 1.08996 * 109.47593 * 244.99976 * 20 19 18 46 46 H 1.09005 * 109.47127 * 5.00233 * 20 19 18 47 47 H 0.96993 * 120.00175 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5852 3.4691 0.8903 8 6 3.4487 3.6850 -1.2487 9 6 3.9228 5.1142 -1.1878 10 6 3.1300 6.0809 -0.5981 11 6 3.5670 7.3910 -0.5379 12 6 4.7923 7.7363 -1.0768 13 6 5.5829 6.7705 -1.6711 14 6 5.1481 5.4595 -1.7267 15 7 5.3837 2.8608 -0.0001 16 6 6.0772 2.7182 1.2075 17 6 5.5005 2.6355 2.4853 18 6 6.5019 2.5035 3.3847 19 7 7.6692 2.5027 2.7074 20 6 9.0053 2.3814 3.2957 21 6 9.7349 1.2303 2.6524 22 1 9.2517 0.6477 1.8820 23 6 11.0196 0.9216 3.0466 24 7 11.6081 1.6313 3.9843 25 14 11.9235 -0.5057 2.2496 26 1 11.0481 -1.1391 1.2310 27 1 13.1602 -0.0058 1.5970 28 1 12.2811 -1.5063 3.2869 29 7 7.3796 2.6323 1.3431 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8582 3.2039 -2.1368 36 1 2.3598 3.6651 -1.2942 37 1 2.1706 5.8121 -0.1814 38 1 2.9492 8.1456 -0.0739 39 1 5.1318 8.7607 -1.0337 40 1 6.5399 7.0404 -2.0925 41 1 5.7658 4.7049 -2.1909 42 1 5.8719 2.9088 -0.8370 43 1 4.4447 2.6711 2.7099 44 1 6.3876 2.4146 4.4549 45 1 9.5616 3.3035 3.1276 46 1 8.9156 2.2014 4.3671 47 1 12.5117 1.4139 4.2619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187404708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:15 Heat of formation + Delta-G solvation = 19.385211 kcal Electronic energy + Delta-G solvation = -29398.960576 eV Core-core repulsion = 25355.577359 eV Total energy + Delta-G solvation = -4043.383217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.72628 -40.03120 -39.35646 -36.97706 -35.80309 -33.67072 -32.63171 -31.88513 -30.97731 -30.70893 -29.47052 -28.43214 -26.33569 -25.20173 -23.18842 -22.93431 -22.60090 -21.36957 -21.10380 -19.93326 -19.48268 -17.75723 -17.08353 -16.68969 -16.51074 -16.50130 -16.29427 -15.45425 -15.29370 -15.06913 -14.62739 -14.25096 -14.17678 -13.87753 -13.63089 -13.47270 -13.17204 -13.02283 -12.95739 -12.71244 -12.36116 -12.22188 -12.15984 -12.06493 -11.77227 -11.69775 -11.63107 -11.25509 -11.08020 -10.98065 -10.79382 -10.62011 -10.55261 -10.18127 -9.94069 -9.59449 -9.27212 -8.97791 -8.80734 -8.56610 -7.89515 -7.07274 -6.17442 -4.21693 1.23009 1.34095 2.26620 2.46833 2.96630 3.21592 3.26996 3.34233 3.43161 3.68851 3.81383 4.14987 4.39409 4.45391 4.66515 4.67245 4.73597 4.77883 4.88234 4.93113 4.98176 5.07885 5.08667 5.17396 5.26205 5.40518 5.47284 5.52245 5.55203 5.58373 5.60241 5.72347 5.91893 5.94518 5.98224 6.24581 6.36959 6.40694 6.44452 6.47659 6.51943 6.78768 6.91854 7.04270 7.19071 7.54963 7.78159 7.84624 7.94359 8.14425 8.17769 8.82894 8.94975 9.43736 10.91040 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008419 B = 0.003233 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.013440 B = 8658.392410 C =10935.120974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.060 3.940 3 O -0.363 6.363 4 C 0.433 3.567 5 O -0.482 6.482 6 C 0.196 3.804 7 H 0.117 0.883 8 C -0.081 4.081 9 C -0.079 4.079 10 C -0.114 4.114 11 C -0.121 4.121 12 C -0.122 4.122 13 C -0.116 4.116 14 C -0.101 4.101 15 N -0.697 5.697 16 C 0.311 3.689 17 C -0.332 4.332 18 C 0.068 3.932 19 N -0.325 5.325 20 C 0.260 3.740 21 C -0.523 4.523 22 H 0.070 0.930 23 C 0.061 3.939 24 N -0.897 5.897 25 Si 0.906 3.094 26 H -0.271 1.271 27 H -0.281 1.281 28 H -0.282 1.282 29 N -0.324 5.324 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.403 0.597 43 H 0.125 0.875 44 H 0.163 0.837 45 H 0.043 0.957 46 H 0.053 0.947 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.383 7.590 -9.461 26.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.280 6.280 4 C 0.271 3.729 5 O -0.366 6.366 6 C 0.085 3.915 7 H 0.134 0.866 8 C -0.119 4.119 9 C -0.079 4.079 10 C -0.132 4.132 11 C -0.139 4.139 12 C -0.140 4.140 13 C -0.134 4.134 14 C -0.119 4.119 15 N -0.339 5.339 16 C 0.055 3.945 17 C -0.365 4.365 18 C -0.084 4.084 19 N -0.105 5.105 20 C 0.142 3.858 21 C -0.562 4.562 22 H 0.088 0.912 23 C -0.142 4.142 24 N -0.536 5.536 25 Si 0.733 3.267 26 H -0.195 1.195 27 H -0.207 1.207 28 H -0.208 1.208 29 N -0.155 5.155 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.119 0.881 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.239 0.761 43 H 0.143 0.857 44 H 0.180 0.820 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.831 7.246 -9.765 24.989 hybrid contribution 0.095 -1.073 -0.009 1.077 sum -21.736 6.173 -9.775 24.619 Atomic orbital electron populations 1.21794 0.92769 1.02827 1.03389 1.22982 0.95135 0.80709 1.02599 1.86502 1.24988 1.32089 1.84464 1.25091 0.80457 0.94182 0.73193 1.90726 1.60235 1.42606 1.43036 1.20153 0.81778 0.88098 1.01473 0.86578 1.20811 1.02542 0.91999 0.96581 1.19571 0.95027 0.94250 0.99098 1.21020 0.99775 0.92925 0.99440 1.21103 0.96533 0.96331 0.99932 1.21156 0.94845 0.99427 0.98559 1.21156 0.99613 0.93235 0.99412 1.21042 0.95278 0.96361 0.99253 1.42930 1.01532 1.84228 1.05188 1.19019 0.90566 0.98577 0.86303 1.20655 0.98793 1.25966 0.91073 1.22285 0.86166 1.01321 0.98583 1.48989 1.07368 1.51666 1.02441 1.19662 0.73885 0.98830 0.93394 1.21333 0.99176 1.13927 1.21738 0.91223 1.24938 0.97028 0.97150 0.95037 1.69928 1.14370 1.39802 1.29520 0.86298 0.79453 0.81656 0.79279 1.19531 1.20733 1.20821 1.77424 1.11486 1.30383 0.96229 0.90452 0.91474 0.91573 0.91466 0.91292 0.89826 0.88091 0.85941 0.86216 0.86332 0.86086 0.86166 0.76077 0.85700 0.82012 0.93910 0.92880 0.92497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.29 37.16 0.38 -0.60 16 2 C 0.06 0.59 6.19 37.16 0.23 0.82 16 3 O -0.36 -4.11 10.03 -39.25 -0.39 -4.50 16 4 C 0.43 5.95 7.30 36.01 0.26 6.21 16 5 O -0.48 -8.73 16.11 -18.75 -0.30 -9.03 16 6 C 0.20 2.37 2.47 -69.08 -0.17 2.20 16 7 H 0.12 1.35 7.14 -51.93 -0.37 0.98 16 8 C -0.08 -0.73 4.86 -27.88 -0.14 -0.86 16 9 C -0.08 -0.79 4.95 -104.62 -0.52 -1.31 16 10 C -0.11 -1.05 9.70 -39.58 -0.38 -1.43 16 11 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 12 C -0.12 -1.20 10.05 -39.58 -0.40 -1.60 16 13 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 14 C -0.10 -1.09 9.10 -39.58 -0.36 -1.45 16 15 N -0.70 -10.94 4.25 -54.70 -0.23 -11.17 16 16 C 0.31 6.27 8.06 -154.55 -1.25 5.02 16 17 C -0.33 -6.29 9.92 -39.82 -0.39 -6.68 16 18 C 0.07 1.38 11.43 -17.24 -0.20 1.18 16 19 N -0.33 -7.81 3.67 -62.56 -0.23 -8.04 16 20 C 0.26 6.84 6.26 -5.19 -0.03 6.81 16 21 C -0.52 -15.14 9.23 -34.44 -0.32 -15.46 16 22 H 0.07 2.12 7.81 -52.48 -0.41 1.71 16 23 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 24 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 25 Si 0.91 22.14 29.54 -169.99 -5.02 17.12 16 26 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 29 N -0.32 -7.80 12.42 31.41 0.39 -7.41 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.66 8.13 -51.93 -0.42 0.24 16 34 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 35 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.10 0.71 7.94 -51.93 -0.41 0.30 16 37 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.12 1.21 7.57 -52.49 -0.40 0.81 16 42 H 0.40 6.04 7.96 -40.82 -0.32 5.72 16 43 H 0.13 2.01 7.45 -52.49 -0.39 1.62 16 44 H 0.16 2.66 8.06 -52.49 -0.42 2.24 16 45 H 0.04 1.19 8.14 -51.93 -0.42 0.76 16 46 H 0.05 1.37 8.07 -51.93 -0.42 0.95 16 47 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 LS Contribution 405.43 15.07 6.11 6.11 Total: -1.00 -34.96 405.43 -10.04 -45.01 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: -6.93 Total: 5.89 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -4.17 Total: -8.67 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.66 Total: -51.92 kcal Atomic # 8 Polarization: -12.84 SS G_CDS: -0.70 Total: -13.54 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.96 -10.04 -45.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187404708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.393 kcal (2) G-P(sol) polarization free energy of solvation -34.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds