Wall clock time and date at job start Wed Apr 1 2020 02:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 O 1.45204 * 109.46751 * 2 1 4 4 C 1.34227 * 116.99337 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00589 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99624 * 180.02562 * 4 3 2 7 7 H 1.08990 * 109.47377 * 59.99521 * 6 4 3 8 8 C 1.52997 * 109.46790 * 299.99191 * 6 4 3 9 9 C 1.50703 * 109.47134 * 175.00193 * 8 6 4 10 10 C 1.38235 * 119.99814 * 269.73174 * 9 8 6 11 11 C 1.38239 * 119.99988 * 179.76192 * 10 9 8 12 12 C 1.38243 * 119.99446 * 0.50913 * 11 10 9 13 13 C 1.38232 * 120.00272 * 359.74541 * 12 11 10 14 14 C 1.38233 * 119.99874 * 90.00262 * 9 8 6 15 15 N 1.46499 * 109.46902 * 179.97438 * 6 4 3 16 16 C 1.39985 * 119.99868 * 274.99547 * 15 6 4 17 17 C 1.40434 * 125.97765 * 0.02562 * 16 15 6 18 18 C 1.35250 * 107.86352 * 179.97438 * 17 16 15 19 19 N 1.34958 * 107.86302 * 0.02562 * 18 17 16 20 20 C 1.46495 * 125.97141 * 179.97438 * 19 18 17 21 21 C 1.50704 * 109.47360 * 124.99652 * 20 19 18 22 22 H 1.08005 * 119.99330 * 0.02562 * 21 20 19 23 23 C 1.37876 * 120.00300 * 179.97438 * 21 20 19 24 24 N 1.31512 * 120.00153 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99733 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47209 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.46886 * 120.00490 * 25 23 21 28 28 H 1.48500 * 109.47212 * 239.99834 * 25 23 21 29 29 N 1.31227 * 125.97786 * 179.69459 * 16 15 6 30 30 H 1.08997 * 109.46769 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.46826 * 300.00020 * 1 2 3 32 32 H 1.09000 * 109.47007 * 59.99839 * 1 2 3 33 33 H 1.08997 * 109.46826 * 239.99980 * 2 1 3 34 34 H 1.08996 * 109.47112 * 119.99657 * 2 1 3 35 35 H 1.08991 * 109.47642 * 295.00297 * 8 6 4 36 36 H 1.09005 * 109.47281 * 55.00365 * 8 6 4 37 37 H 1.07998 * 120.00326 * 359.97438 * 10 9 8 38 38 H 1.07998 * 120.00489 * 180.22653 * 11 10 9 39 39 H 1.08002 * 119.99290 * 179.71870 * 12 11 10 40 40 H 1.07997 * 119.99980 * 179.97438 * 13 12 11 41 41 H 1.08000 * 120.00321 * 359.97438 * 14 9 8 42 42 H 0.97005 * 120.00261 * 94.99827 * 15 6 4 43 43 H 1.08002 * 126.06760 * 359.97438 * 17 16 15 44 44 H 1.07997 * 126.06366 * 180.02562 * 18 17 16 45 45 H 1.08996 * 109.47593 * 244.99976 * 20 19 18 46 46 H 1.09005 * 109.47127 * 5.00233 * 20 19 18 47 47 H 0.96993 * 120.00175 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9207 2.9375 0.0000 7 1 3.5852 3.4691 0.8903 8 6 3.4487 3.6850 -1.2487 9 6 3.9228 5.1142 -1.1878 10 6 3.1300 6.0809 -0.5981 11 6 3.5670 7.3910 -0.5379 12 6 4.7923 7.7363 -1.0768 13 6 5.5829 6.7705 -1.6711 14 6 5.1481 5.4595 -1.7267 15 7 5.3837 2.8608 -0.0001 16 6 6.0772 2.7182 1.2075 17 6 5.5005 2.6355 2.4853 18 6 6.5019 2.5035 3.3847 19 7 7.6692 2.5027 2.7074 20 6 9.0053 2.3814 3.2957 21 6 9.7349 1.2303 2.6524 22 1 9.2517 0.6477 1.8820 23 6 11.0196 0.9216 3.0466 24 7 11.6081 1.6313 3.9843 25 14 11.9235 -0.5057 2.2496 26 1 11.0481 -1.1391 1.2310 27 1 13.1602 -0.0058 1.5970 28 1 12.2811 -1.5063 3.2869 29 7 7.3796 2.6323 1.3431 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8582 3.2039 -2.1368 36 1 2.3598 3.6651 -1.2942 37 1 2.1706 5.8121 -0.1814 38 1 2.9492 8.1456 -0.0739 39 1 5.1318 8.7607 -1.0337 40 1 6.5399 7.0404 -2.0925 41 1 5.7658 4.7049 -2.1909 42 1 5.8719 2.9088 -0.8370 43 1 4.4447 2.6711 2.7099 44 1 6.3876 2.4146 4.4549 45 1 9.5616 3.3035 3.1276 46 1 8.9156 2.2014 4.3671 47 1 12.5117 1.4139 4.2619 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187404708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:14 Heat of formation + Delta-G solvation = 0.444050 kcal Electronic energy + Delta-G solvation = -29399.781926 eV Core-core repulsion = 25355.577359 eV Total energy + Delta-G solvation = -4044.204568 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.98669 -41.44206 -40.12502 -38.01913 -36.97063 -35.56943 -34.02943 -32.58257 -32.27278 -31.68341 -30.98172 -29.65497 -28.20735 -26.06085 -24.88622 -23.90720 -23.40108 -22.31361 -22.20468 -21.43594 -20.88458 -18.80557 -18.66803 -18.16829 -17.93073 -17.41366 -17.32593 -16.90005 -16.39045 -16.10504 -15.89915 -15.76212 -15.38809 -15.11038 -14.61991 -14.56664 -14.25227 -14.17377 -13.87580 -13.77763 -13.67415 -13.57783 -13.54388 -13.04936 -12.95526 -12.84103 -12.72769 -12.56499 -12.46397 -12.30779 -12.10228 -11.94650 -11.77667 -11.59521 -11.48561 -11.20081 -10.99437 -10.71275 -9.72495 -9.57266 -9.52273 -8.66535 -8.30782 -6.47509 0.47253 0.59723 1.18692 1.26426 1.33429 1.35313 1.48150 1.49172 1.82081 2.30580 2.32776 2.70918 2.93161 2.96733 3.59820 3.81333 3.87226 4.02464 4.04069 4.05849 4.13416 4.19328 4.23739 4.34418 4.37540 4.39041 4.53261 4.69933 4.77016 4.84781 4.87150 4.87878 4.91221 4.97874 5.00104 5.04165 5.18392 5.21179 5.24583 5.47819 5.48950 5.57100 5.64616 5.71381 5.75007 5.83923 6.19897 6.21682 6.36861 6.64381 6.70840 6.78192 7.22503 7.31680 8.73596 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.008419 B = 0.003233 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3325.013440 B = 8658.392410 C =10935.120974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 O -0.351 6.351 4 C 0.441 3.559 5 O -0.532 6.532 6 C 0.196 3.804 7 H 0.130 0.870 8 C -0.070 4.070 9 C -0.086 4.086 10 C -0.115 4.115 11 C -0.128 4.128 12 C -0.133 4.133 13 C -0.138 4.138 14 C -0.121 4.121 15 N -0.691 5.691 16 C 0.317 3.683 17 C -0.327 4.327 18 C 0.065 3.935 19 N -0.355 5.355 20 C 0.276 3.724 21 C -0.545 4.545 22 H 0.045 0.955 23 C 0.019 3.981 24 N -0.920 5.920 25 Si 0.969 3.031 26 H -0.280 1.280 27 H -0.271 1.271 28 H -0.266 1.266 29 N -0.382 5.382 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.057 0.943 35 H 0.087 0.913 36 H 0.130 0.870 37 H 0.149 0.851 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.122 0.878 41 H 0.117 0.883 42 H 0.404 0.596 43 H 0.159 0.841 44 H 0.196 0.804 45 H 0.017 0.983 46 H 0.055 0.945 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.135 7.651 -9.481 28.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.022 4.022 3 O -0.267 6.267 4 C 0.281 3.719 5 O -0.420 6.420 6 C 0.086 3.914 7 H 0.147 0.853 8 C -0.108 4.108 9 C -0.086 4.086 10 C -0.133 4.133 11 C -0.145 4.145 12 C -0.151 4.151 13 C -0.156 4.156 14 C -0.139 4.139 15 N -0.333 5.333 16 C 0.060 3.940 17 C -0.359 4.359 18 C -0.085 4.085 19 N -0.135 5.135 20 C 0.157 3.843 21 C -0.583 4.583 22 H 0.064 0.936 23 C -0.181 4.181 24 N -0.559 5.559 25 Si 0.794 3.206 26 H -0.205 1.205 27 H -0.196 1.196 28 H -0.191 1.191 29 N -0.214 5.214 30 H 0.112 0.888 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.148 0.852 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.140 0.860 41 H 0.135 0.865 42 H 0.240 0.760 43 H 0.176 0.824 44 H 0.213 0.787 45 H 0.034 0.966 46 H 0.073 0.927 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -24.650 7.332 -9.790 27.518 hybrid contribution 0.783 -1.044 -0.050 1.306 sum -23.867 6.289 -9.840 26.571 Atomic orbital electron populations 1.21802 0.89822 1.04210 1.04107 1.23247 0.97372 0.79700 1.01928 1.86501 1.23394 1.33129 1.83652 1.25275 0.80901 0.94011 0.71673 1.90723 1.61470 1.44205 1.45634 1.20472 0.79469 0.87678 1.03756 0.85254 1.20810 1.04098 0.90909 0.94952 1.19673 0.94794 0.94877 0.99288 1.21370 1.00609 0.92656 0.98649 1.21455 0.96438 0.97141 0.99506 1.21433 0.95243 1.00011 0.98376 1.21349 1.00212 0.93710 1.00305 1.21196 0.96086 0.96502 1.00078 1.43174 1.03049 1.83213 1.03842 1.19418 0.89891 0.96404 0.88282 1.21038 1.00119 1.24631 0.90142 1.22980 0.85084 0.99966 1.00419 1.48692 1.07352 1.54494 1.02955 1.19189 0.75175 0.96633 0.93289 1.21424 1.00150 1.14901 1.21819 0.93644 1.25710 0.97496 0.99525 0.95403 1.69992 1.14922 1.40881 1.30112 0.85341 0.78118 0.78737 0.78444 1.20499 1.19602 1.19135 1.77314 1.13956 1.33425 0.96753 0.88770 0.90978 0.90570 0.91836 0.92475 0.89439 0.85177 0.83287 0.83966 0.84966 0.85972 0.86529 0.76015 0.82368 0.78722 0.96555 0.92702 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 10.29 71.99 0.74 -0.70 16 2 C 0.05 0.92 6.19 71.99 0.45 1.37 16 3 O -0.35 -7.09 10.03 -51.39 -0.52 -7.61 16 4 C 0.44 11.45 7.30 71.24 0.52 11.97 16 5 O -0.53 -19.18 16.11 21.96 0.35 -18.83 16 6 C 0.20 4.35 2.47 44.25 0.11 4.46 16 7 H 0.13 2.60 7.14 -2.39 -0.02 2.58 16 8 C -0.07 -1.08 4.86 29.85 0.14 -0.94 16 9 C -0.09 -1.55 4.95 -19.87 -0.10 -1.65 16 10 C -0.12 -1.79 9.70 22.27 0.22 -1.58 16 11 C -0.13 -2.07 10.05 22.27 0.22 -1.85 16 12 C -0.13 -2.48 10.05 22.27 0.22 -2.26 16 13 C -0.14 -2.94 10.05 22.27 0.22 -2.72 16 14 C -0.12 -2.58 9.10 22.27 0.20 -2.38 16 15 N -0.69 -21.46 4.25 -326.97 -1.39 -22.85 16 16 C 0.32 12.81 8.06 133.39 1.07 13.89 16 17 C -0.33 -11.97 9.92 22.12 0.22 -11.75 16 18 C 0.07 2.59 11.43 83.52 0.96 3.54 16 19 N -0.35 -17.52 3.67 -351.85 -1.29 -18.82 16 20 C 0.28 15.12 6.26 85.64 0.54 15.66 16 21 C -0.54 -32.62 9.23 25.60 0.24 -32.38 16 22 H 0.05 2.89 7.81 -2.91 -0.02 2.86 16 23 C 0.02 1.09 5.46 84.65 0.46 1.55 16 24 N -0.92 -53.93 13.29 21.45 0.28 -53.65 16 25 Si 0.97 45.92 29.54 68.60 2.03 47.95 16 26 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 29 N -0.38 -19.04 12.42 -54.54 -0.68 -19.72 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.06 1.19 8.13 -2.39 -0.02 1.17 16 34 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 35 H 0.09 1.32 8.08 -2.39 -0.02 1.30 16 36 H 0.13 1.30 7.94 -2.38 -0.02 1.28 16 37 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 38 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.13 1.98 8.06 -2.91 -0.02 1.95 16 40 H 0.12 2.41 8.06 -2.91 -0.02 2.39 16 41 H 0.12 2.44 7.57 -2.91 -0.02 2.42 16 42 H 0.40 12.32 7.96 -92.70 -0.74 11.58 16 43 H 0.16 4.61 7.45 -2.91 -0.02 4.58 16 44 H 0.20 6.11 8.06 -2.91 -0.02 6.09 16 45 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.06 2.92 8.07 -2.38 -0.02 2.90 16 47 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -78.16 405.43 5.47 -72.70 By element: Atomic # 1 Polarization: 26.35 SS G_CDS: 0.24 Total: 26.59 kcal Atomic # 6 Polarization: -12.20 SS G_CDS: 6.44 Total: -5.77 kcal Atomic # 7 Polarization: -111.96 SS G_CDS: -3.07 Total: -115.03 kcal Atomic # 8 Polarization: -26.28 SS G_CDS: -0.16 Total: -26.44 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -78.16 5.47 -72.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187404708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.142 kcal (2) G-P(sol) polarization free energy of solvation -78.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds