Wall clock time and date at job start Wed Apr 1 2020 02:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47282 * 2 1 4 4 C 1.46501 * 119.99553 * 74.09086 * 3 2 1 5 5 C 1.50701 * 109.47191 * 89.99973 * 4 3 2 6 6 H 1.08001 * 119.99819 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99925 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99802 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99848 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46959 * 59.99592 * 9 7 5 11 11 H 1.48498 * 109.47020 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46774 * 299.99787 * 9 7 5 13 13 C 1.34770 * 120.00414 * 254.08969 * 3 2 1 14 14 O 1.21592 * 119.99955 * 183.53189 * 13 3 2 15 15 C 1.47629 * 120.00027 * 3.52930 * 13 3 2 16 16 C 1.39824 * 120.01950 * 23.48570 * 15 13 3 17 17 C 1.37774 * 120.19452 * 179.76614 * 16 15 13 18 18 C 1.38789 * 120.23171 * 0.50376 * 17 16 15 19 19 O 1.35656 * 119.97899 * 179.76685 * 18 17 16 20 20 C 1.42904 * 117.00137 * 359.97438 * 19 18 17 21 21 C 1.40180 * 120.03942 * 359.74789 * 18 17 16 22 22 C 1.47940 * 120.09432 * 179.97438 * 21 18 17 23 23 C 1.36642 * 126.34230 * 311.18870 * 22 21 18 24 24 C 1.39508 * 107.84752 * 179.84965 * 23 22 21 25 25 N 1.30885 * 108.59339 * 0.42555 * 24 23 22 26 26 N 1.36288 * 126.33664 * 131.50632 * 22 21 18 27 27 C 1.46502 * 126.14307 * 359.97438 * 26 22 21 28 28 C 1.39055 * 119.80597 * 359.97438 * 21 18 17 29 29 H 1.09002 * 109.46898 * 299.99057 * 1 2 3 30 30 H 1.08993 * 109.47188 * 59.99259 * 1 2 3 31 31 H 1.09002 * 109.47315 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47554 * 120.00772 * 2 1 3 33 33 H 1.09010 * 109.46705 * 240.00633 * 2 1 3 34 34 H 1.09001 * 109.47145 * 210.00018 * 4 3 2 35 35 H 1.08998 * 109.47151 * 330.00145 * 4 3 2 36 36 H 0.97005 * 119.99344 * 180.02562 * 8 7 5 37 37 H 1.08002 * 119.90157 * 359.97438 * 16 15 13 38 38 H 1.07996 * 119.87943 * 180.24881 * 17 16 15 39 39 H 1.08995 * 109.46970 * 299.99979 * 20 19 18 40 40 H 1.08998 * 109.47147 * 59.99940 * 20 19 18 41 41 H 1.09000 * 109.46690 * 179.97438 * 20 19 18 42 42 H 1.08001 * 126.07719 * 359.96590 * 23 22 21 43 43 H 1.08000 * 125.70678 * 180.14941 * 24 23 22 44 44 H 1.09003 * 109.46707 * 94.82214 * 27 26 22 45 45 H 1.08995 * 109.47291 * 214.82913 * 27 26 22 46 46 H 1.09002 * 109.46466 * 334.83057 * 27 26 22 47 47 H 1.08002 * 120.11525 * 179.97438 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9346 2.1876 1.2202 5 6 3.1941 2.0087 2.0281 6 1 3.9784 1.3588 1.6687 7 6 3.3448 2.6737 3.2265 8 7 2.3896 3.4646 3.6642 9 14 4.9064 2.4524 4.2275 10 1 6.0757 2.8911 3.4241 11 1 4.8214 3.2698 5.4644 12 1 5.0635 1.0208 4.5894 13 6 2.5447 1.9099 -1.1224 14 8 3.0085 3.0338 -1.1055 15 6 2.5581 1.1246 -2.3724 16 6 1.6377 0.0884 -2.5574 17 6 1.6439 -0.6437 -3.7245 18 6 2.5702 -0.3645 -4.7197 19 8 2.5747 -1.0917 -5.8649 20 6 1.5987 -2.1293 -5.9784 21 6 3.5007 0.6687 -4.5423 22 6 4.4890 0.9670 -5.6020 23 6 5.2843 0.0614 -6.2457 24 6 6.0633 0.7575 -7.1702 25 7 5.7674 2.0300 -7.0911 26 7 4.7790 2.1969 -6.1127 27 6 4.1667 3.4657 -5.7109 28 6 3.4922 1.4124 -3.3673 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8199 3.2384 0.9541 35 1 1.0761 1.8663 1.8099 36 1 2.4959 3.9327 4.5071 37 1 0.9176 -0.1366 -1.7845 38 1 0.9281 -1.4403 -3.8638 39 1 1.7395 -2.8502 -5.1732 40 1 0.6001 -1.6979 -5.9094 41 1 1.7118 -2.6308 -6.9396 42 1 5.3047 -1.0043 -6.0713 43 1 6.7922 0.3202 -7.8364 44 1 4.7894 3.9468 -4.9566 45 1 4.0789 4.1180 -6.5797 46 1 3.1762 3.2760 -5.2973 47 1 4.2072 2.2093 -3.2252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507373676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:17 Heat of formation + Delta-G solvation = 69.018187 kcal Electronic energy + Delta-G solvation = -30140.221967 eV Core-core repulsion = 26098.990997 eV Total energy + Delta-G solvation = -4041.230970 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.31337 -40.35169 -39.27985 -37.00411 -35.73280 -33.46533 -32.95324 -32.19423 -30.53430 -30.36581 -28.88628 -27.93509 -26.89458 -26.71320 -23.72096 -23.56492 -22.89701 -21.93181 -20.90959 -20.41048 -18.83465 -18.27747 -17.37486 -16.65485 -16.47090 -16.11726 -15.93655 -15.39984 -15.22474 -14.96704 -14.61339 -14.38702 -14.19390 -14.12413 -13.71355 -13.55000 -13.46953 -12.86668 -12.75973 -12.70206 -12.42906 -12.37941 -12.19667 -12.13511 -12.02218 -11.65876 -11.33782 -11.22766 -11.08163 -10.93491 -10.68662 -10.62584 -10.49624 -10.15241 -9.68105 -9.61668 -9.08979 -8.98833 -8.59032 -8.44869 -8.10730 -7.72590 -6.06350 -4.10809 0.78116 1.03478 1.92474 2.47427 2.80898 2.96938 3.21806 3.31339 3.35764 3.39218 3.72969 4.02016 4.28552 4.43687 4.52922 4.60234 4.73162 4.82554 4.86015 4.96189 5.07456 5.13963 5.17051 5.19678 5.28099 5.28925 5.33362 5.45027 5.46971 5.56834 5.60389 5.64257 5.79903 5.83146 5.91733 6.02345 6.15096 6.17925 6.28637 6.42100 6.47350 6.64735 6.90996 7.03208 7.11099 7.39016 7.47802 7.68765 7.89748 8.20538 8.33173 8.85640 9.01214 9.54169 11.01749 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012411 B = 0.003154 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.443536 B = 8876.524903 C =10242.170513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.074 3.926 3 N -0.587 5.587 4 C 0.248 3.752 5 C -0.527 4.527 6 H 0.057 0.943 7 C 0.062 3.938 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.548 3.452 14 O -0.536 6.536 15 C -0.154 4.154 16 C -0.070 4.070 17 C -0.219 4.219 18 C 0.170 3.830 19 O -0.302 6.302 20 C 0.024 3.976 21 C -0.084 4.084 22 C 0.139 3.861 23 C -0.245 4.245 24 C 0.041 3.959 25 N -0.296 5.296 26 N -0.368 5.368 27 C 0.097 3.903 28 C -0.011 4.011 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.094 0.906 34 H 0.044 0.956 35 H 0.035 0.965 36 H 0.264 0.736 37 H 0.170 0.830 38 H 0.138 0.862 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.147 0.853 43 H 0.182 0.818 44 H 0.080 0.920 45 H 0.087 0.913 46 H 0.089 0.911 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.913 -12.427 -19.610 23.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.050 4.050 3 N -0.318 5.318 4 C 0.129 3.871 5 C -0.566 4.566 6 H 0.075 0.925 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.335 3.665 14 O -0.415 6.415 15 C -0.157 4.157 16 C -0.088 4.088 17 C -0.237 4.237 18 C 0.123 3.877 19 O -0.214 6.214 20 C -0.072 4.072 21 C -0.087 4.087 22 C 0.012 3.988 23 C -0.274 4.274 24 C -0.144 4.144 25 N -0.118 5.118 26 N -0.151 5.151 27 C -0.044 4.044 28 C -0.030 4.030 29 H 0.091 0.909 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.062 0.938 35 H 0.053 0.947 36 H 0.074 0.926 37 H 0.187 0.813 38 H 0.155 0.845 39 H 0.077 0.923 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.164 0.836 43 H 0.199 0.801 44 H 0.098 0.902 45 H 0.106 0.894 46 H 0.108 0.892 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.408 -10.361 -20.007 22.787 hybrid contribution 0.453 -1.118 1.157 1.672 sum -2.955 -11.479 -18.850 22.267 Atomic orbital electron populations 1.22288 0.96444 1.01899 1.03034 1.22276 0.93889 0.84936 1.03863 1.48124 1.58674 1.12904 1.12069 1.19294 0.97178 0.91384 0.79270 1.21388 1.02843 1.27811 1.04533 0.92466 1.24920 0.96714 0.94894 0.97479 1.69917 1.32836 1.29165 1.21503 0.86564 0.83593 0.78060 0.79262 1.20148 1.21161 1.20234 1.18003 0.79246 0.86360 0.82933 1.90764 1.46097 1.19460 1.85140 1.20083 0.99409 0.99477 0.96750 1.22519 0.97842 0.91834 0.96576 1.21141 1.02407 1.05223 0.94953 1.19058 0.92864 0.90309 0.85510 1.86122 1.54592 1.45522 1.35209 1.23137 0.91394 0.89156 1.03464 1.17132 0.97823 0.99282 0.94462 1.19253 0.97371 0.85833 0.96353 1.21324 1.02835 1.00168 1.03085 1.23673 1.00328 0.90789 0.99581 1.77296 1.06596 1.19133 1.08799 1.48849 1.30861 1.06062 1.29339 1.21949 0.98454 0.82371 1.01672 1.21183 0.95886 0.96269 0.89687 0.90945 0.92361 0.91715 0.90328 0.88858 0.93820 0.94728 0.92649 0.81293 0.84479 0.92260 0.92456 0.88105 0.83573 0.80131 0.90193 0.89406 0.89221 0.84211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.06 37.16 0.34 -1.87 16 2 C 0.07 1.13 5.60 -4.04 -0.02 1.11 16 3 N -0.59 -12.12 2.50 -176.25 -0.44 -12.56 16 4 C 0.25 6.32 5.07 -5.19 -0.03 6.29 16 5 C -0.53 -14.82 9.39 -34.44 -0.32 -15.14 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.32 13.29 55.43 0.74 -25.58 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 C 0.55 11.43 7.50 -12.43 -0.09 11.33 16 14 O -0.54 -13.41 16.19 5.28 0.09 -13.33 16 15 C -0.15 -2.47 5.60 -105.01 -0.59 -3.06 16 16 C -0.07 -0.87 7.48 -39.16 -0.29 -1.16 16 17 C -0.22 -2.27 9.01 -39.55 -0.36 -2.63 16 18 C 0.17 2.01 6.67 -38.65 -0.26 1.75 16 19 O -0.30 -3.15 9.31 -18.67 -0.17 -3.32 16 20 C 0.02 0.14 9.81 101.05 0.99 1.13 16 21 C -0.08 -1.15 5.36 -104.89 -0.56 -1.71 16 22 C 0.14 1.93 6.17 -82.49 -0.51 1.42 16 23 C -0.25 -3.13 9.94 -39.69 -0.39 -3.52 16 24 C 0.04 0.50 11.99 -17.48 -0.21 0.29 16 25 N -0.30 -4.25 12.56 30.56 0.38 -3.87 16 26 N -0.37 -5.14 4.05 -64.17 -0.26 -5.40 16 27 C 0.10 1.09 10.57 59.85 0.63 1.73 16 28 C -0.01 -0.16 8.20 -38.82 -0.32 -0.48 16 29 H 0.07 1.03 7.37 -51.93 -0.38 0.65 16 30 H 0.06 0.68 7.04 -51.93 -0.37 0.31 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.09 1.22 3.98 -52.92 -0.21 1.01 16 34 H 0.04 1.26 7.47 -51.93 -0.39 0.87 16 35 H 0.03 0.88 7.26 -51.93 -0.38 0.50 16 36 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 37 H 0.17 1.90 2.40 -52.49 -0.13 1.77 16 38 H 0.14 0.98 6.27 -52.49 -0.33 0.65 16 39 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 40 H 0.06 0.29 7.65 -51.93 -0.40 -0.10 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.15 1.64 8.06 -52.49 -0.42 1.21 16 43 H 0.18 1.52 8.06 -52.49 -0.42 1.10 16 44 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 45 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.09 0.97 7.21 -51.93 -0.37 0.59 16 47 H 0.14 2.25 7.48 -52.49 -0.39 1.86 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -35.59 386.37 -7.20 -42.79 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.24 Total: 1.51 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -2.09 Total: -2.86 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.42 Total: -47.41 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.09 Total: -16.65 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.59 -7.20 -42.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507373676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.812 kcal (2) G-P(sol) polarization free energy of solvation -35.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds