Wall clock time and date at job start Wed Apr 1 2020 02:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.47282 * 2 1 4 4 C 1.46501 * 119.99553 * 74.09086 * 3 2 1 5 5 C 1.50701 * 109.47191 * 89.99973 * 4 3 2 6 6 H 1.08001 * 119.99819 * 359.97438 * 5 4 3 7 7 C 1.37883 * 119.99925 * 180.02562 * 5 4 3 8 8 N 1.31509 * 119.99802 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99848 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.46959 * 59.99592 * 9 7 5 11 11 H 1.48498 * 109.47020 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46774 * 299.99787 * 9 7 5 13 13 C 1.34770 * 120.00414 * 254.08969 * 3 2 1 14 14 O 1.21592 * 119.99955 * 183.53189 * 13 3 2 15 15 C 1.47629 * 120.00027 * 3.52930 * 13 3 2 16 16 C 1.39824 * 120.01950 * 23.48570 * 15 13 3 17 17 C 1.37774 * 120.19452 * 179.76614 * 16 15 13 18 18 C 1.38789 * 120.23171 * 0.50376 * 17 16 15 19 19 O 1.35656 * 119.97899 * 179.76685 * 18 17 16 20 20 C 1.42904 * 117.00137 * 359.97438 * 19 18 17 21 21 C 1.40180 * 120.03942 * 359.74789 * 18 17 16 22 22 C 1.47940 * 120.09432 * 179.97438 * 21 18 17 23 23 C 1.36642 * 126.34230 * 311.18870 * 22 21 18 24 24 C 1.39508 * 107.84752 * 179.84965 * 23 22 21 25 25 N 1.30885 * 108.59339 * 0.42555 * 24 23 22 26 26 N 1.36288 * 126.33664 * 131.50632 * 22 21 18 27 27 C 1.46502 * 126.14307 * 359.97438 * 26 22 21 28 28 C 1.39055 * 119.80597 * 359.97438 * 21 18 17 29 29 H 1.09002 * 109.46898 * 299.99057 * 1 2 3 30 30 H 1.08993 * 109.47188 * 59.99259 * 1 2 3 31 31 H 1.09002 * 109.47315 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47554 * 120.00772 * 2 1 3 33 33 H 1.09010 * 109.46705 * 240.00633 * 2 1 3 34 34 H 1.09001 * 109.47145 * 210.00018 * 4 3 2 35 35 H 1.08998 * 109.47151 * 330.00145 * 4 3 2 36 36 H 0.97005 * 119.99344 * 180.02562 * 8 7 5 37 37 H 1.08002 * 119.90157 * 359.97438 * 16 15 13 38 38 H 1.07996 * 119.87943 * 180.24881 * 17 16 15 39 39 H 1.08995 * 109.46970 * 299.99979 * 20 19 18 40 40 H 1.08998 * 109.47147 * 59.99940 * 20 19 18 41 41 H 1.09000 * 109.46690 * 179.97438 * 20 19 18 42 42 H 1.08001 * 126.07719 * 359.96590 * 23 22 21 43 43 H 1.08000 * 125.70678 * 180.14941 * 24 23 22 44 44 H 1.09003 * 109.46707 * 94.82214 * 27 26 22 45 45 H 1.08995 * 109.47291 * 214.82913 * 27 26 22 46 46 H 1.09002 * 109.46466 * 334.83057 * 27 26 22 47 47 H 1.08002 * 120.11525 * 179.97438 * 28 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.9346 2.1876 1.2202 5 6 3.1941 2.0087 2.0281 6 1 3.9784 1.3588 1.6687 7 6 3.3448 2.6737 3.2265 8 7 2.3896 3.4646 3.6642 9 14 4.9064 2.4524 4.2275 10 1 6.0757 2.8911 3.4241 11 1 4.8214 3.2698 5.4644 12 1 5.0635 1.0208 4.5894 13 6 2.5447 1.9099 -1.1224 14 8 3.0085 3.0338 -1.1055 15 6 2.5581 1.1246 -2.3724 16 6 1.6377 0.0884 -2.5574 17 6 1.6439 -0.6437 -3.7245 18 6 2.5702 -0.3645 -4.7197 19 8 2.5747 -1.0917 -5.8649 20 6 1.5987 -2.1293 -5.9784 21 6 3.5007 0.6687 -4.5423 22 6 4.4890 0.9670 -5.6020 23 6 5.2843 0.0614 -6.2457 24 6 6.0633 0.7575 -7.1702 25 7 5.7674 2.0300 -7.0911 26 7 4.7790 2.1969 -6.1127 27 6 4.1667 3.4657 -5.7109 28 6 3.4922 1.4124 -3.3673 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8934 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8199 3.2384 0.9541 35 1 1.0761 1.8663 1.8099 36 1 2.4959 3.9327 4.5071 37 1 0.9176 -0.1366 -1.7845 38 1 0.9281 -1.4403 -3.8638 39 1 1.7395 -2.8502 -5.1732 40 1 0.6001 -1.6979 -5.9094 41 1 1.7118 -2.6308 -6.9396 42 1 5.3047 -1.0043 -6.0713 43 1 6.7922 0.3202 -7.8364 44 1 4.7894 3.9468 -4.9566 45 1 4.0789 4.1180 -6.5797 46 1 3.1762 3.2760 -5.2973 47 1 4.2072 2.2093 -3.2252 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507373676.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:16:16 Heat of formation + Delta-G solvation = 45.859838 kcal Electronic energy + Delta-G solvation = -30141.226188 eV Core-core repulsion = 26098.990997 eV Total energy + Delta-G solvation = -4042.235191 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.31128 -41.49778 -40.45086 -38.12646 -37.29790 -35.07657 -34.30842 -33.37207 -31.79407 -31.62477 -29.92436 -29.18838 -28.09904 -27.67469 -25.39005 -24.75683 -24.08968 -23.17243 -21.93120 -21.48078 -20.18479 -19.17911 -18.70180 -18.47330 -17.72266 -17.33487 -16.83689 -16.69086 -16.38020 -16.15084 -15.99657 -15.91121 -15.38385 -15.13280 -14.98408 -14.65291 -14.42546 -14.37697 -13.89656 -13.70567 -13.55179 -13.46036 -13.41917 -13.29018 -13.20700 -13.07261 -12.80010 -12.64460 -12.50819 -12.27723 -12.14499 -11.95169 -11.73843 -11.69105 -11.59842 -10.74446 -10.65155 -10.62269 -9.99577 -9.64869 -9.45765 -9.08502 -8.23810 -6.38076 -0.24740 -0.04300 0.92453 1.34752 1.39130 1.46250 1.52323 1.80486 1.98576 2.18997 2.24869 2.40827 2.70849 3.05728 3.30562 3.54544 3.62963 3.74408 3.88737 4.00665 4.17163 4.25260 4.28686 4.31728 4.33896 4.44744 4.51275 4.54508 4.56036 4.61594 4.64513 4.80789 4.81990 4.88276 4.93203 4.97195 5.03538 5.05646 5.17131 5.19707 5.27470 5.41116 5.46895 5.55987 5.74439 5.82106 5.95800 6.05199 6.31474 6.66932 6.71385 6.73597 7.24705 7.40710 8.82949 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.012411 B = 0.003154 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2255.443536 B = 8876.524903 C =10242.170513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.066 3.934 3 N -0.592 5.592 4 C 0.264 3.736 5 C -0.545 4.545 6 H 0.049 0.951 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.964 3.036 10 H -0.281 1.281 11 H -0.276 1.276 12 H -0.259 1.259 13 C 0.539 3.461 14 O -0.597 6.597 15 C -0.177 4.177 16 C -0.059 4.059 17 C -0.198 4.198 18 C 0.185 3.815 19 O -0.312 6.312 20 C 0.009 3.991 21 C -0.092 4.092 22 C 0.121 3.879 23 C -0.248 4.248 24 C 0.044 3.956 25 N -0.326 5.326 26 N -0.381 5.381 27 C 0.095 3.905 28 C -0.017 4.017 29 H 0.046 0.954 30 H 0.068 0.932 31 H 0.109 0.891 32 H 0.069 0.931 33 H 0.125 0.875 34 H -0.003 1.003 35 H 0.032 0.968 36 H 0.268 0.732 37 H 0.186 0.814 38 H 0.184 0.816 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.119 0.881 42 H 0.163 0.837 43 H 0.216 0.784 44 H 0.073 0.927 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.640 -16.357 -21.268 27.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.056 4.056 3 N -0.322 5.322 4 C 0.143 3.857 5 C -0.584 4.584 6 H 0.068 0.932 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.788 3.212 10 H -0.207 1.207 11 H -0.201 1.201 12 H -0.184 1.184 13 C 0.329 3.671 14 O -0.480 6.480 15 C -0.180 4.180 16 C -0.077 4.077 17 C -0.217 4.217 18 C 0.136 3.864 19 O -0.224 6.224 20 C -0.085 4.085 21 C -0.094 4.094 22 C -0.006 4.006 23 C -0.276 4.276 24 C -0.140 4.140 25 N -0.148 5.148 26 N -0.164 5.164 27 C -0.046 4.046 28 C -0.037 4.037 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.128 0.872 32 H 0.088 0.912 33 H 0.142 0.858 34 H 0.015 0.985 35 H 0.049 0.951 36 H 0.077 0.923 37 H 0.202 0.798 38 H 0.201 0.799 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.137 0.863 42 H 0.180 0.820 43 H 0.233 0.767 44 H 0.092 0.908 45 H 0.121 0.879 46 H 0.108 0.892 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.167 -14.352 -21.682 26.334 hybrid contribution 0.648 0.007 1.510 1.643 sum -3.518 -14.346 -20.172 25.002 Atomic orbital electron populations 1.22252 0.93750 1.04597 1.02366 1.22690 0.96093 0.81830 1.04952 1.48120 1.58895 1.14657 1.10520 1.18731 0.96206 0.89803 0.80972 1.21671 1.03540 1.27951 1.05243 0.93241 1.25804 1.00022 0.94406 0.98623 1.70029 1.34717 1.29797 1.22021 0.85526 0.78992 0.78989 0.77667 1.20690 1.20093 1.18369 1.18803 0.77805 0.86083 0.84376 1.90710 1.48707 1.22228 1.86317 1.19650 1.02200 1.01364 0.94784 1.22589 0.96710 0.90502 0.97904 1.21519 1.02081 1.05074 0.92976 1.19130 0.91777 0.89270 0.86227 1.86135 1.55970 1.46151 1.34167 1.23556 0.91076 0.88435 1.05390 1.17120 0.98695 0.99984 0.93637 1.19542 0.98012 0.86265 0.96759 1.21604 1.02364 1.00851 1.02831 1.24286 1.00231 0.90041 0.99443 1.77254 1.07360 1.20545 1.09685 1.49048 1.31160 1.06633 1.29592 1.22019 0.98214 0.82200 1.02188 1.20943 0.95784 0.96369 0.90601 0.93445 0.91277 0.87197 0.91234 0.85815 0.98499 0.95051 0.92339 0.79766 0.79851 0.90365 0.90942 0.86256 0.81962 0.76713 0.90798 0.87854 0.89201 0.86687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.88 9.06 71.98 0.65 -3.23 16 2 C 0.07 1.94 5.60 86.38 0.48 2.43 16 3 N -0.59 -25.49 2.50 -829.80 -2.07 -27.56 16 4 C 0.26 14.31 5.07 85.63 0.43 14.75 16 5 C -0.55 -32.00 9.39 25.60 0.24 -31.76 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.62 5.46 84.66 0.46 1.08 16 8 N -0.93 -56.20 13.29 21.45 0.28 -55.91 16 9 Si 0.96 45.54 29.54 68.60 2.03 47.56 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 H -0.26 -11.45 7.11 99.48 0.71 -10.75 16 13 C 0.54 23.82 7.50 86.72 0.65 24.47 16 14 O -0.60 -32.53 16.19 -4.01 -0.06 -32.59 16 15 C -0.18 -5.74 5.60 -20.12 -0.11 -5.85 16 16 C -0.06 -1.32 7.48 22.54 0.17 -1.15 16 17 C -0.20 -3.23 9.01 22.29 0.20 -3.03 16 18 C 0.18 3.77 6.67 22.87 0.15 3.92 16 19 O -0.31 -5.26 9.31 -89.72 -0.84 -6.10 16 20 C 0.01 0.06 9.81 113.37 1.11 1.17 16 21 C -0.09 -2.43 5.36 -20.04 -0.11 -2.54 16 22 C 0.12 3.31 6.17 40.65 0.25 3.56 16 23 C -0.25 -5.92 9.94 22.20 0.22 -5.70 16 24 C 0.04 1.01 11.99 85.14 1.02 2.03 16 25 N -0.33 -9.24 12.56 -57.24 -0.72 -9.96 16 26 N -0.38 -10.78 4.05 -356.92 -1.45 -12.22 16 27 C 0.09 2.27 10.57 127.77 1.35 3.62 16 28 C -0.02 -0.54 8.20 22.76 0.19 -0.35 16 29 H 0.05 1.32 7.37 -2.39 -0.02 1.31 16 30 H 0.07 1.42 7.04 -2.39 -0.02 1.41 16 31 H 0.11 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.12 2.92 3.98 -3.32 -0.01 2.90 16 34 H 0.00 -0.20 7.47 -2.39 -0.02 -0.21 16 35 H 0.03 1.69 7.26 -2.39 -0.02 1.68 16 36 H 0.27 15.24 8.31 -92.70 -0.77 14.47 16 37 H 0.19 3.49 2.40 -2.91 -0.01 3.48 16 38 H 0.18 1.33 6.27 -2.91 -0.02 1.31 16 39 H 0.08 0.29 7.65 -2.39 -0.02 0.27 16 40 H 0.07 0.32 7.65 -2.39 -0.02 0.31 16 41 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.22 3.05 8.06 -2.91 -0.02 3.03 16 44 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.09 2.10 7.21 -2.39 -0.02 2.08 16 47 H 0.12 4.11 7.48 -2.91 -0.02 4.09 16 Total: -1.00 -84.07 386.37 5.54 -78.53 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: 1.00 Total: 14.81 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 7.37 Total: 3.44 kcal Atomic # 7 Polarization: -101.71 SS G_CDS: -3.96 Total: -105.66 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -0.90 Total: -38.69 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -84.07 5.54 -78.53 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507373676.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.394 kcal (2) G-P(sol) polarization free energy of solvation -84.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds