Wall clock time and date at job start Wed Apr 1 2020 02:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21294 * 119.99981 * 2 1 4 4 N 1.34778 * 120.00326 * 180.02562 * 2 1 3 5 5 C 1.39924 * 120.00199 * 175.34052 * 4 2 1 6 6 C 1.38896 * 120.07224 * 35.14464 * 5 4 2 7 7 C 1.38084 * 119.92737 * 180.02562 * 6 5 4 8 8 C 1.38312 * 120.07161 * 0.02562 * 7 6 5 9 9 C 1.38260 * 120.14253 * 359.97438 * 8 7 6 10 10 C 1.50697 * 119.96516 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.47125 * 89.99595 * 10 9 8 12 12 O 1.21280 * 120.00115 * 0.02562 * 11 10 9 13 13 N 1.34772 * 119.99744 * 179.72462 * 11 10 9 14 14 C 1.46495 * 120.00087 * 180.27866 * 13 11 10 15 15 H 1.09006 * 115.51681 * 9.41086 * 14 13 11 16 16 C 1.52999 * 117.44342 * 224.00029 * 14 13 11 17 17 H 1.08998 * 119.54139 * 4.11692 * 16 14 13 18 18 C 1.54392 * 118.12230 * 160.80216 * 16 14 13 19 19 N 1.48150 * 104.61479 * 87.19439 * 18 16 14 20 20 C 1.36941 * 127.84036 * 140.41367 * 19 18 16 21 21 H 1.08000 * 119.99435 * 344.82942 * 20 19 18 22 22 C 1.38808 * 120.00100 * 164.83079 * 20 19 18 23 23 N 1.31618 * 120.00038 * 349.82437 * 22 20 19 24 24 Si 1.86805 * 119.99814 * 169.81982 * 22 20 19 25 25 H 1.48496 * 109.46829 * 60.00465 * 24 22 20 26 26 H 1.48500 * 109.46938 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47264 * 300.00070 * 24 22 20 28 28 C 1.51691 * 104.54804 * 320.18945 * 19 18 16 29 29 C 1.52997 * 117.44829 * 154.82971 * 14 13 11 30 30 H 1.09002 * 119.53802 * 355.88370 * 29 14 13 31 31 C 1.38141 * 120.06701 * 0.24919 * 9 8 7 32 32 H 1.09000 * 109.47028 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47579 * 300.00094 * 1 2 3 34 34 H 1.09007 * 109.46920 * 60.00278 * 1 2 3 35 35 H 0.97001 * 119.99600 * 355.33051 * 4 2 1 36 36 H 1.08001 * 120.03462 * 0.02763 * 6 5 4 37 37 H 1.08003 * 119.96688 * 180.02562 * 7 6 5 38 38 H 1.07995 * 119.92674 * 179.97438 * 8 7 6 39 39 H 1.09004 * 109.47087 * 329.99655 * 10 9 8 40 40 H 1.09003 * 109.46704 * 209.99753 * 10 9 8 41 41 H 0.96999 * 120.00344 * 0.27144 * 13 11 10 42 42 H 1.09006 * 110.40915 * 205.97341 * 18 16 14 43 43 H 1.08994 * 110.41217 * 328.41005 * 18 16 14 44 44 H 0.96998 * 119.99976 * 180.02562 * 23 22 20 45 45 H 1.09004 * 111.95819 * 281.12658 * 28 19 18 46 46 H 1.08999 * 110.49505 * 157.55682 * 28 19 18 47 47 H 1.08001 * 120.03158 * 179.72415 * 31 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 3.5767 -1.1691 -0.0990 6 6 4.3182 -0.1602 0.5022 7 6 5.6954 -0.1647 0.4028 8 6 6.3366 -1.1722 -0.2951 9 6 5.6013 -2.1779 -0.8946 10 6 6.3040 -3.2734 -1.6545 11 6 6.6228 -4.4098 -0.7175 12 8 6.3098 -4.3376 0.4520 13 7 7.2503 -5.5090 -1.1805 14 6 7.5548 -6.6164 -0.2710 15 1 7.1049 -6.5479 0.7194 16 6 8.9436 -7.2504 -0.3722 17 1 9.6793 -6.8267 -1.0558 18 6 9.4542 -8.0792 0.8261 19 7 8.9383 -9.4464 0.5819 20 6 9.5794 -10.6371 0.7973 21 1 10.6479 -10.6546 0.9531 22 6 8.8558 -11.8216 0.8152 23 7 7.5401 -11.7889 0.8267 24 14 9.7496 -13.4619 0.8230 25 1 10.6119 -13.5500 2.0287 26 1 8.7570 -14.5663 0.8420 27 1 10.5902 -13.5735 -0.3960 28 6 7.5359 -9.2340 0.0441 29 6 7.7038 -8.0108 -0.8828 30 1 7.5159 -8.1536 -1.9469 31 6 4.2230 -2.1766 -0.8027 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 -0.3633 0.5138 -0.8901 35 1 1.6983 -2.0058 0.0675 36 1 3.8181 0.6270 1.0469 37 1 6.2727 0.6193 0.8703 38 1 7.4138 -1.1732 -0.3717 39 1 7.2283 -2.8842 -2.0814 40 1 5.6572 -3.6328 -2.4548 41 1 7.5003 -5.5670 -2.1159 42 1 10.5440 -8.0828 0.8491 43 1 9.0548 -7.6835 1.7599 44 1 7.0345 -12.6166 0.8396 45 1 6.8235 -9.0134 0.8391 46 1 7.2110 -10.1028 -0.5283 47 1 3.6490 -2.9600 -1.2750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000962348310.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:47:25 Heat of formation + Delta-G solvation = 18.997959 kcal Electronic energy + Delta-G solvation = -28218.731636 eV Core-core repulsion = 24175.331627 eV Total energy + Delta-G solvation = -4043.400010 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 343.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.84913 -39.93614 -38.81948 -37.99779 -35.20489 -34.35976 -32.98121 -32.44824 -31.16245 -30.25138 -29.08327 -27.71405 -27.14782 -25.53454 -22.99655 -22.77414 -21.85178 -20.70953 -20.46259 -19.91974 -19.22128 -17.92873 -17.17519 -17.00173 -16.82921 -16.43463 -16.19188 -15.95910 -15.35095 -14.73881 -14.57749 -14.42685 -14.11815 -13.89836 -13.64707 -13.30274 -13.21787 -13.10509 -12.98135 -12.76372 -12.45244 -12.31817 -12.19130 -11.91334 -11.54338 -11.46298 -11.38314 -11.00985 -10.81652 -10.62147 -10.45739 -10.22773 -10.17378 -10.15845 -9.86230 -9.68001 -9.23065 -8.91656 -8.74745 -8.35774 -8.33752 -6.88680 -5.79928 -3.12540 1.08942 1.20449 2.20108 2.62899 2.71655 3.11896 3.38864 3.43219 3.44353 3.68232 4.29573 4.30241 4.41578 4.46555 4.64508 4.68788 4.85365 4.90730 4.91100 5.07084 5.14034 5.15959 5.21906 5.29937 5.33977 5.37212 5.39759 5.47676 5.54823 5.77410 5.79342 5.88592 6.07010 6.12688 6.14730 6.21986 6.33199 6.42088 6.51928 6.68584 6.78710 6.84413 6.88490 7.01397 7.28817 7.49125 7.56944 7.68357 7.71129 8.13904 8.28431 9.05703 9.72429 10.49248 11.35318 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.001731 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.556853 B =16172.688689 C =16897.026144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.510 3.490 3 O -0.530 6.530 4 N -0.673 5.673 5 C 0.138 3.862 6 C -0.120 4.120 7 C -0.102 4.102 8 C -0.116 4.116 9 C -0.046 4.046 10 C -0.102 4.102 11 C 0.515 3.485 12 O -0.529 6.529 13 N -0.700 5.700 14 C 0.096 3.904 15 H 0.131 0.869 16 C -0.182 4.182 17 H 0.103 0.897 18 C 0.158 3.842 19 N -0.598 5.598 20 C -0.226 4.226 21 H 0.076 0.924 22 C -0.007 4.007 23 N -0.917 5.917 24 Si 0.912 3.088 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.186 3.814 29 C -0.178 4.178 30 H 0.101 0.899 31 C -0.127 4.127 32 H 0.079 0.921 33 H 0.098 0.902 34 H 0.098 0.902 35 H 0.412 0.588 36 H 0.136 0.864 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.399 0.601 42 H 0.051 0.949 43 H 0.026 0.974 44 H 0.255 0.745 45 H 0.032 0.968 46 H 0.090 0.910 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.049 23.073 -7.446 26.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.298 3.702 3 O -0.406 6.406 4 N -0.318 5.318 5 C 0.045 3.955 6 C -0.140 4.140 7 C -0.121 4.121 8 C -0.134 4.134 9 C -0.047 4.047 10 C -0.142 4.142 11 C 0.301 3.699 12 O -0.404 6.404 13 N -0.349 5.349 14 C -0.010 4.010 15 H 0.148 0.852 16 C -0.204 4.204 17 H 0.121 0.879 18 C 0.031 3.969 19 N -0.323 5.323 20 C -0.354 4.354 21 H 0.094 0.906 22 C -0.204 4.204 23 N -0.563 5.563 24 Si 0.743 3.257 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.211 1.211 28 C 0.061 3.939 29 C -0.199 4.199 30 H 0.119 0.881 31 C -0.148 4.148 32 H 0.098 0.902 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.248 0.752 36 H 0.154 0.846 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.232 0.768 42 H 0.070 0.930 43 H 0.044 0.956 44 H 0.065 0.935 45 H 0.050 0.950 46 H 0.108 0.892 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -10.959 23.616 -6.559 26.848 hybrid contribution 0.347 -1.436 -0.588 1.590 sum -10.612 22.180 -7.146 25.605 Atomic orbital electron populations 1.21858 0.90698 1.04672 1.05696 1.21023 0.90900 0.83152 0.75101 1.90733 1.70399 1.31317 1.48118 1.43668 1.05376 1.09976 1.72813 1.17653 0.82366 0.97350 0.98147 1.21228 0.93817 0.99182 0.99744 1.21005 0.93976 0.98442 0.98634 1.20990 0.99779 0.94436 0.98240 1.18999 0.92653 0.94872 0.98223 1.20680 1.02498 0.93109 0.97878 1.20445 0.77551 0.82878 0.89041 1.90740 1.51902 1.80108 1.17669 1.45411 1.59848 1.17070 1.12529 1.21864 0.98945 0.84857 0.95357 0.85162 1.24355 0.90576 1.02470 1.02978 0.87945 1.21063 0.97038 0.86005 0.92765 1.46031 1.12693 0.99586 1.73965 1.18965 0.91051 0.82450 1.42905 0.90585 1.24867 0.95598 0.97992 1.01915 1.69883 1.04310 1.26273 1.55848 0.86197 0.78374 0.83190 0.77986 1.21006 1.21576 1.21146 1.21655 0.86628 0.92398 0.93200 1.24560 1.02386 0.92470 1.00528 0.88075 1.20686 0.94256 0.99372 1.00459 0.90225 0.88345 0.88311 0.75176 0.84611 0.85661 0.85999 0.87748 0.87896 0.76773 0.93017 0.95647 0.93529 0.95006 0.89169 0.85855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.66 10.39 36.00 0.37 -0.28 16 2 C 0.51 4.30 7.78 -10.99 -0.09 4.21 16 3 O -0.53 -6.66 14.54 5.55 0.08 -6.58 16 4 N -0.67 -5.35 5.34 -9.86 -0.05 -5.40 16 5 C 0.14 1.49 6.30 -83.69 -0.53 0.96 16 6 C -0.12 -1.40 8.70 -39.39 -0.34 -1.74 16 7 C -0.10 -1.10 10.04 -39.61 -0.40 -1.49 16 8 C -0.12 -1.23 9.70 -39.55 -0.38 -1.62 16 9 C -0.05 -0.49 4.37 -104.65 -0.46 -0.95 16 10 C -0.10 -0.88 5.83 -29.04 -0.17 -1.05 16 11 C 0.51 6.66 7.82 -10.99 -0.09 6.57 16 12 O -0.53 -9.26 15.60 5.56 0.09 -9.17 16 13 N -0.70 -8.70 5.56 -53.81 -0.30 -9.00 16 14 C 0.10 1.57 5.97 -67.94 -0.41 1.16 16 15 H 0.13 2.48 7.40 -51.93 -0.38 2.09 16 16 C -0.18 -3.19 7.05 -89.29 -0.63 -3.82 16 17 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 18 C 0.16 3.34 7.05 -2.40 -0.02 3.32 16 19 N -0.60 -15.28 3.45 -165.82 -0.57 -15.85 16 20 C -0.23 -6.27 10.36 -15.06 -0.16 -6.42 16 21 H 0.08 2.04 7.85 -52.49 -0.41 1.62 16 22 C -0.01 -0.19 5.40 -17.43 -0.09 -0.28 16 23 N -0.92 -26.71 10.88 55.49 0.60 -26.10 16 24 Si 0.91 21.83 29.57 -169.99 -5.03 16.80 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.19 4.40 5.91 -0.37 0.00 4.40 16 29 C -0.18 -3.26 6.96 -89.30 -0.62 -3.88 16 30 H 0.10 1.67 8.14 -51.93 -0.42 1.25 16 31 C -0.13 -1.32 9.62 -39.39 -0.38 -1.70 16 32 H 0.08 0.13 7.92 -51.93 -0.41 -0.29 16 33 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.41 2.02 8.66 -40.82 -0.35 1.66 16 36 H 0.14 1.66 6.23 -52.49 -0.33 1.33 16 37 H 0.13 1.08 8.06 -52.48 -0.42 0.66 16 38 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 39 H 0.10 0.67 8.09 -51.93 -0.42 0.25 16 40 H 0.10 0.65 8.08 -51.93 -0.42 0.23 16 41 H 0.40 3.69 8.83 -40.82 -0.36 3.33 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.09 2.36 6.62 -51.93 -0.34 2.02 16 47 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 394.66 15.07 5.95 5.95 Total: -1.00 -36.34 394.66 -10.41 -46.75 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -6.79 Total: 5.22 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -4.38 Total: -2.61 kcal Atomic # 7 Polarization: -56.04 SS G_CDS: -0.32 Total: -56.35 kcal Atomic # 8 Polarization: -15.92 SS G_CDS: 0.17 Total: -15.75 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.34 -10.41 -46.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000962348310.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.745 kcal (2) G-P(sol) polarization free energy of solvation -36.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds