Wall clock time and date at job start Wed Apr 1 2020 01:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.81394 * 103.00270 * 2 1 4 4 C 1.53001 * 109.47269 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.46884 * 304.99897 * 4 3 2 6 6 C 1.53004 * 109.47300 * 64.99511 * 4 3 2 7 7 C 1.50698 * 109.47524 * 185.00009 * 4 3 2 8 8 O 1.21290 * 119.99787 * 359.97438 * 7 4 3 9 9 N 1.34771 * 120.00042 * 180.02562 * 7 4 3 10 10 C 1.46509 * 119.99581 * 179.97438 * 9 7 4 11 11 C 1.53001 * 109.46802 * 179.97438 * 10 9 7 12 12 C 1.53781 * 113.61341 * 174.99846 * 11 10 9 13 13 C 1.53781 * 87.08070 * 140.06609 * 12 11 10 14 14 N 1.46900 * 113.61428 * 219.93557 * 13 12 11 15 15 C 1.46895 * 110.99924 * 203.46824 * 14 13 12 16 16 C 1.50700 * 109.47106 * 180.02562 * 15 14 13 17 17 O 1.21294 * 120.00101 * 0.02562 * 16 15 14 18 18 N 1.34774 * 120.00188 * 180.02562 * 16 15 14 19 19 C 1.37098 * 120.00693 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99366 * 359.97438 * 19 18 16 21 21 C 1.38946 * 120.00595 * 179.97438 * 19 18 16 22 22 N 1.31405 * 119.99867 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 119.99990 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47288 * 89.99691 * 23 21 19 25 25 H 1.48501 * 109.46900 * 209.99506 * 23 21 19 26 26 H 1.48497 * 109.46809 * 329.99423 * 23 21 19 27 27 C 1.53786 * 87.17350 * 334.52830 * 13 12 11 28 28 H 1.08995 * 109.47292 * 300.00480 * 1 2 3 29 29 H 1.09007 * 109.47155 * 59.99740 * 1 2 3 30 30 H 1.08995 * 109.47488 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47112 * 59.99759 * 3 2 1 32 32 H 1.09001 * 109.47065 * 299.99621 * 3 2 1 33 33 H 1.08997 * 109.47363 * 180.02562 * 6 4 3 34 34 H 1.09002 * 109.47146 * 300.00793 * 6 4 3 35 35 H 1.08998 * 109.46860 * 60.00129 * 6 4 3 36 36 H 0.96997 * 120.00572 * 359.97438 * 9 7 4 37 37 H 1.09002 * 109.47110 * 59.99931 * 10 9 7 38 38 H 1.08998 * 109.47069 * 299.99860 * 10 9 7 39 39 H 1.09003 * 112.84746 * 43.80477 * 11 10 9 40 40 H 1.08999 * 113.61181 * 25.51665 * 12 11 10 41 41 H 1.08998 * 113.61680 * 254.61217 * 12 11 10 42 42 H 1.09002 * 113.61445 * 89.11830 * 13 12 11 43 43 H 1.00902 * 110.99925 * 79.51829 * 14 13 12 44 44 H 1.08994 * 109.47448 * 300.00310 * 15 14 13 45 45 H 1.09001 * 109.47145 * 60.00387 * 15 14 13 46 46 H 0.97006 * 119.99894 * 359.97438 * 18 16 15 47 47 H 0.97005 * 120.00057 * 179.97438 * 22 21 19 48 48 H 1.08992 * 113.61675 * 140.02412 * 27 13 12 49 49 H 1.09000 * 113.60973 * 270.92699 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7674 0.0000 4 6 3.7424 1.9398 -0.0006 5 1 4.1702 1.3950 0.8410 6 6 4.3173 1.3916 -1.3083 7 6 4.0822 3.4028 0.1232 8 8 3.1956 4.2266 0.2035 9 7 5.3711 3.7958 0.1436 10 6 5.7013 5.2182 0.2634 11 6 7.2216 5.3905 0.2629 12 6 7.6750 6.8600 0.2622 13 6 8.7775 6.4383 1.2479 14 7 9.0120 7.4137 2.3210 15 6 10.3656 7.2728 2.8739 16 6 10.5687 8.2870 3.9698 17 8 9.6736 9.0518 4.2619 18 7 11.7448 8.3445 4.6255 19 6 11.9295 9.2668 5.6229 20 1 11.1325 9.9477 5.8829 21 6 13.1418 9.3256 6.2991 22 7 14.1113 8.4968 5.9830 23 14 13.3935 10.5829 7.6576 24 1 12.9803 9.9963 8.9578 25 1 14.8274 10.9639 7.7199 26 1 12.5729 11.7878 7.3750 27 6 7.8581 5.2769 1.6612 28 1 -0.3633 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8032 2.2370 0.8899 32 1 1.8032 2.2370 -0.8900 33 1 5.4004 1.5140 -1.3085 34 1 4.0715 0.3334 -1.3978 35 1 3.8895 1.9364 -2.1498 36 1 6.0802 3.1371 0.0790 37 1 5.2920 5.6090 1.1950 38 1 5.2733 5.7627 -0.5782 39 1 7.7164 4.7805 -0.4929 40 1 6.9426 7.5430 0.6925 41 1 8.0567 7.1987 -0.7009 42 1 9.6977 6.1148 0.7614 43 1 8.3149 7.3288 3.0455 44 1 10.4893 6.2692 3.2807 45 1 11.0994 7.4380 2.0850 46 1 12.4605 7.7326 4.3921 47 1 14.9579 8.5381 6.4549 48 1 8.3873 4.3386 1.8266 49 1 7.1756 5.5280 2.4732 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100190607.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:48:28 Heat of formation + Delta-G solvation = -67.762596 kcal Electronic energy + Delta-G solvation = -26370.949705 eV Core-core repulsion = 22459.231426 eV Total energy + Delta-G solvation = -3911.718278 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.43523 -39.38507 -38.05205 -35.22334 -35.02378 -34.04062 -33.15063 -31.20322 -29.57099 -28.56345 -27.55476 -26.33866 -25.78610 -24.25296 -23.55683 -21.59590 -20.58806 -19.78273 -19.06560 -17.87760 -17.72511 -16.83265 -16.20624 -16.09126 -16.05048 -15.67185 -15.24796 -14.85390 -14.61225 -14.45884 -14.32119 -14.18980 -13.96976 -13.84960 -13.58746 -13.35185 -13.09780 -12.77733 -12.58093 -12.55036 -12.54389 -12.38081 -11.90044 -11.85868 -11.71619 -11.55780 -11.52110 -11.10356 -11.02820 -10.70387 -10.49991 -10.49428 -10.39166 -10.21516 -10.03647 -9.51022 -9.39176 -8.44641 -8.15599 -8.01613 -7.94871 -6.41846 -3.82621 1.12852 2.06792 2.26790 2.85491 3.17894 3.26586 3.32804 3.90975 4.04861 4.09247 4.27391 4.28581 4.29977 4.37014 4.49192 4.65500 4.66881 4.69028 4.76734 4.85680 4.96705 5.01799 5.11449 5.18250 5.22198 5.24942 5.27760 5.28319 5.41570 5.46071 5.59389 5.64432 5.66225 5.68981 5.79849 5.86140 5.96935 6.00754 6.12956 6.20499 6.32892 7.10638 7.27422 7.55207 7.66931 7.83909 8.06483 8.61325 9.17980 9.54349 10.05912 10.75899 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.024379 B = 0.001359 C = 0.001336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.272058 B =20599.992920 C =20951.435870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.262 6.262 3 C -0.066 4.066 4 C -0.095 4.095 5 H 0.107 0.893 6 C -0.146 4.146 7 C 0.520 3.480 8 O -0.540 6.540 9 N -0.724 5.724 10 C 0.130 3.870 11 C -0.125 4.125 12 C -0.116 4.116 13 C 0.069 3.931 14 N -0.657 5.657 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.166 4.166 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.401 0.599 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.351 0.649 44 H 0.043 0.957 45 H 0.085 0.915 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.066 0.934 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.974 -19.621 -16.616 31.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.036 6.036 3 C -0.215 4.215 4 C -0.118 4.118 5 H 0.125 0.875 6 C -0.204 4.204 7 C 0.304 3.696 8 O -0.417 6.417 9 N -0.376 5.376 10 C 0.007 3.993 11 C -0.144 4.144 12 C -0.155 4.155 13 C -0.042 4.042 14 N -0.288 5.288 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.205 4.205 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.236 0.764 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.172 0.828 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.085 0.915 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -19.175 -18.849 -16.681 31.642 hybrid contribution 0.139 0.059 1.074 1.085 sum -19.036 -18.789 -15.607 30.968 Atomic orbital electron populations 1.23391 0.93853 1.06559 1.05177 1.86736 1.07807 1.10969 1.98093 1.23208 0.97743 0.93964 1.06537 1.21045 0.95083 0.93715 1.01930 0.87513 1.21855 1.00840 1.02608 0.95072 1.20443 0.82712 0.90485 0.75931 1.90728 1.47038 1.54617 1.49319 1.46002 1.07342 1.09414 1.74821 1.21424 0.94631 0.80792 1.02455 1.22715 0.93733 0.99448 0.98502 1.23049 0.98396 0.94296 0.99784 1.22989 0.96978 0.90253 0.94008 1.60007 1.03607 1.50557 1.14675 1.21705 0.91765 0.97316 0.97435 1.19854 0.84224 0.87787 0.85634 1.90525 1.42795 1.44681 1.68775 1.41865 1.12734 1.33096 1.32350 1.19712 0.99783 1.12643 1.10793 0.87932 1.25251 0.95220 0.98248 0.99164 1.69611 1.04880 1.37473 1.42394 0.85862 0.77411 0.80520 0.80529 1.20437 1.20914 1.19392 1.23905 0.99743 1.00277 0.96599 0.90343 0.90370 0.87981 0.89077 0.89316 0.91759 0.90246 0.91800 0.76438 0.91066 0.91251 0.88690 0.89139 0.91047 0.88585 0.82794 0.93884 0.89651 0.77478 0.91892 0.91503 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.58 10.76 101.05 1.09 0.51 16 2 S -0.26 -1.80 21.19 -107.50 -2.28 -4.08 16 3 C -0.07 -0.48 4.73 37.16 0.18 -0.30 16 4 C -0.10 -0.62 2.72 -91.77 -0.25 -0.87 16 5 H 0.11 0.60 8.14 -51.92 -0.42 0.18 16 6 C -0.15 -0.72 8.92 37.16 0.33 -0.39 16 7 C 0.52 4.68 7.15 -10.99 -0.08 4.60 16 8 O -0.54 -7.06 15.92 5.55 0.09 -6.97 16 9 N -0.72 -5.19 5.45 -60.29 -0.33 -5.51 16 10 C 0.13 1.09 5.52 -4.04 -0.02 1.07 16 11 C -0.12 -0.94 3.76 -89.67 -0.34 -1.27 16 12 C -0.12 -1.12 7.44 -25.92 -0.19 -1.32 16 13 C 0.07 0.77 4.16 -66.90 -0.28 0.49 16 14 N -0.66 -10.28 6.24 -107.13 -0.67 -10.95 16 15 C 0.05 0.87 6.02 -4.98 -0.03 0.84 16 16 C 0.44 10.37 7.82 -10.99 -0.09 10.28 16 17 O -0.58 -15.93 15.78 5.55 0.09 -15.84 16 18 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 19 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 20 H 0.10 3.02 7.16 -52.48 -0.38 2.64 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 23 Si 0.93 21.07 29.55 -169.99 -5.02 16.05 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 27 C -0.17 -1.50 7.28 -25.77 -0.19 -1.69 16 28 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 29 H 0.08 0.33 8.14 -51.92 -0.42 -0.10 16 30 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.09 0.75 7.96 -51.93 -0.41 0.33 16 32 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 33 H 0.06 0.23 7.56 -51.93 -0.39 -0.17 16 34 H 0.08 0.40 7.13 -51.93 -0.37 0.03 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.40 1.88 7.89 -40.82 -0.32 1.56 16 37 H 0.07 0.72 7.85 -51.93 -0.41 0.31 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.98 8.10 -51.93 -0.42 0.56 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.10 1.00 7.88 -51.93 -0.41 0.59 16 43 H 0.35 5.75 7.91 -39.29 -0.31 5.44 16 44 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 46 H 0.39 9.45 7.90 -40.82 -0.32 9.13 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.09 0.86 7.59 -51.93 -0.39 0.47 16 LS Contribution 416.16 15.07 6.27 6.27 Total: -1.00 -33.42 416.16 -9.64 -43.06 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -8.35 Total: 12.14 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.11 Total: 3.94 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.33 Total: -54.57 kcal Atomic # 8 Polarization: -22.99 SS G_CDS: 0.18 Total: -22.81 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: -1.80 SS G_CDS: -2.28 Total: -4.08 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.42 -9.64 -43.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100190607.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.700 kcal (2) G-P(sol) polarization free energy of solvation -33.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds