Wall clock time and date at job start Wed Apr 1 2020 01:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47068 * 2 1 4 4 C 1.46765 * 124.34844 * 90.00002 * 3 2 1 5 5 C 1.54480 * 105.47306 * 163.00486 * 4 3 2 6 6 C 1.54637 * 101.79655 * 25.39729 * 5 4 3 7 7 H 1.09001 * 110.48391 * 93.89928 * 6 5 4 8 8 N 1.46895 * 110.48453 * 216.54243 * 6 5 4 9 9 C 1.46899 * 110.99750 * 205.00379 * 8 6 5 10 10 C 1.53008 * 109.46999 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.47178 * 294.99700 * 10 9 8 12 12 C 1.52997 * 109.47116 * 174.99381 * 10 9 8 13 13 N 1.46499 * 109.47078 * 54.99946 * 10 9 8 14 14 C 1.46508 * 120.00114 * 59.99637 * 13 10 9 15 15 C 1.34771 * 120.00417 * 239.99939 * 13 10 9 16 16 O 1.21290 * 119.99505 * 359.97438 * 15 13 10 17 17 C 1.50697 * 120.00659 * 179.97438 * 15 13 10 18 18 S 1.81000 * 109.47469 * 179.97438 * 17 15 13 19 19 C 1.76195 * 100.00065 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00124 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00017 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99982 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46776 * 60.00233 * 23 21 19 25 25 H 1.48504 * 109.46960 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47085 * 299.99784 * 23 21 19 27 27 C 1.34412 * 124.35012 * 270.02663 * 3 2 1 28 28 O 1.21283 * 124.94095 * 0.38910 * 27 3 2 29 29 H 1.09007 * 109.47179 * 299.99875 * 1 2 3 30 30 H 1.08997 * 109.47533 * 59.99719 * 1 2 3 31 31 H 1.09003 * 109.47135 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47211 * 240.00389 * 2 1 3 33 33 H 1.09004 * 109.47148 * 119.99773 * 2 1 3 34 34 H 1.09000 * 110.24541 * 44.00914 * 4 3 2 35 35 H 1.08995 * 110.32113 * 282.04470 * 4 3 2 36 36 H 1.09002 * 110.96988 * 143.53587 * 5 4 3 37 37 H 1.09003 * 110.97155 * 267.26099 * 5 4 3 38 38 H 1.00903 * 111.00007 * 328.95385 * 8 6 5 39 39 H 1.08997 * 109.47189 * 299.99421 * 9 8 6 40 40 H 1.08998 * 109.47593 * 60.00199 * 9 8 6 41 41 H 1.09001 * 109.47392 * 180.02562 * 12 10 9 42 42 H 1.08997 * 109.47595 * 300.00956 * 12 10 9 43 43 H 1.09009 * 109.46573 * 60.00271 * 12 10 9 44 44 H 1.08993 * 109.46795 * 90.00255 * 14 13 10 45 45 H 1.09000 * 109.47369 * 210.00438 * 14 13 10 46 46 H 1.09004 * 109.47086 * 330.00285 * 14 13 10 47 47 H 1.09003 * 109.47069 * 300.00186 * 17 15 13 48 48 H 1.09002 * 109.46910 * 60.00326 * 17 15 13 49 49 H 0.97007 * 119.99778 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1739 3.3445 0.7487 6 6 2.7695 3.4761 -0.7381 7 1 1.9746 4.2129 -0.8533 8 7 3.9331 3.8409 -1.5570 9 6 3.5169 4.5307 -2.7853 10 6 4.7534 4.8945 -3.6100 11 1 5.3552 5.6194 -3.0619 12 6 4.3159 5.5001 -4.9451 13 7 5.5473 3.6884 -3.8577 14 6 4.9580 2.5596 -4.5823 15 6 6.8196 3.6172 -3.4190 16 8 7.3075 4.5519 -2.8195 17 6 7.6361 2.3764 -3.6734 18 16 9.2897 2.5870 -2.9682 19 6 10.0061 1.0361 -3.3993 20 1 9.4251 0.3052 -3.9422 21 6 11.3170 0.7537 -3.0412 22 7 12.0248 1.6443 -2.3791 23 14 12.0763 -0.8909 -3.4976 24 1 12.0659 -1.0480 -4.9742 25 1 13.4756 -0.9442 -3.0034 26 1 11.2907 -1.9879 -2.8775 27 6 2.2706 2.0965 -1.1097 28 8 2.1208 1.6946 -2.2442 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.8327 1.5533 1.9381 35 1 1.3644 2.5305 1.6446 36 1 2.9300 4.2519 1.3011 37 1 4.2328 3.1042 0.8451 38 1 4.5846 4.4028 -1.0297 39 1 2.8706 3.8753 -3.3690 40 1 2.9738 5.4394 -2.5256 41 1 5.1967 5.7589 -5.5328 42 1 3.7139 4.7753 -5.4931 43 1 3.7252 6.3975 -4.7607 44 1 5.1405 2.6784 -5.6503 45 1 5.4111 1.6301 -4.2375 46 1 3.8841 2.5305 -4.3982 47 1 7.1489 1.5192 -3.2084 48 1 7.7181 2.2093 -4.7474 49 1 12.9412 1.4471 -2.1292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268050708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:04 Heat of formation + Delta-G solvation = -60.897361 kcal Electronic energy + Delta-G solvation = -28673.565388 eV Core-core repulsion = 24762.144809 eV Total energy + Delta-G solvation = -3911.420579 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71114 -39.46336 -36.79678 -36.54146 -35.14675 -33.13420 -32.35720 -31.60497 -29.26918 -28.50527 -27.28484 -26.51563 -25.41230 -24.78609 -23.59961 -22.01861 -21.27977 -19.42034 -18.83888 -17.60646 -17.19116 -16.86487 -16.61455 -15.89441 -15.79370 -15.23240 -14.76716 -14.72971 -14.64051 -14.28880 -14.06120 -13.92231 -13.75715 -13.46151 -13.14032 -13.02077 -12.81945 -12.68671 -12.57378 -12.42601 -12.25589 -12.19982 -12.14881 -11.84319 -11.73197 -11.57237 -11.38060 -11.16487 -10.98595 -10.96970 -10.79893 -10.69341 -10.04517 -9.72591 -9.14825 -8.98994 -8.96371 -8.52918 -8.24236 -8.12626 -6.40344 -6.14652 -3.83630 2.44678 2.75260 3.10583 3.27412 3.28802 3.31526 3.35394 3.74426 3.91659 4.03632 4.21522 4.28087 4.62072 4.66875 4.76731 4.82366 4.87157 5.01142 5.04902 5.12968 5.16194 5.20178 5.22841 5.30764 5.36382 5.37791 5.41947 5.45244 5.54773 5.59635 5.63708 5.67430 5.72751 5.76388 5.81708 6.01924 6.05607 6.12815 6.18537 6.31732 6.32385 6.72153 6.87636 6.94731 7.21054 7.66464 7.80797 8.08306 8.42488 8.78861 9.30658 10.92725 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.002988 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.999319 B = 9368.744389 C =10828.646608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.622 5.622 4 C 0.107 3.893 5 C -0.138 4.138 6 C 0.057 3.943 7 H 0.079 0.921 8 N -0.661 5.661 9 C 0.049 3.951 10 C 0.139 3.861 11 H 0.099 0.901 12 C -0.158 4.158 13 N -0.600 5.600 14 C 0.087 3.913 15 C 0.541 3.459 16 O -0.528 6.528 17 C -0.147 4.147 18 S -0.063 6.063 19 C -0.533 4.533 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.869 5.869 23 Si 0.917 3.083 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C 0.531 3.469 28 O -0.518 6.518 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.353 0.647 39 H 0.085 0.915 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.058 0.942 43 H 0.063 0.937 44 H 0.045 0.955 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.965 3.104 5.355 26.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.001 3.999 3 N -0.358 5.358 4 C -0.016 4.016 5 C -0.176 4.176 6 C -0.057 4.057 7 H 0.097 0.903 8 N -0.294 5.294 9 C -0.081 4.081 10 C 0.035 3.965 11 H 0.117 0.883 12 C -0.217 4.217 13 N -0.335 5.335 14 C -0.056 4.056 15 C 0.329 3.671 16 O -0.403 6.403 17 C -0.298 4.298 18 S 0.164 5.836 19 C -0.681 4.681 20 H 0.089 0.911 21 C -0.136 4.136 22 N -0.505 5.505 23 Si 0.743 3.257 24 H -0.200 1.200 25 H -0.209 1.209 26 H -0.200 1.200 27 C 0.317 3.683 28 O -0.393 6.393 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.087 0.913 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.174 0.826 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.064 0.936 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.106 0.894 48 H 0.104 0.896 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.126 3.618 5.407 25.955 hybrid contribution -0.466 -1.451 -0.554 1.621 sum -25.593 2.167 4.853 26.139 Atomic orbital electron populations 1.22157 0.95949 1.02312 1.02234 1.21331 0.94099 0.81162 1.03350 1.48244 1.66602 1.13722 1.07257 1.22009 0.99110 0.92817 0.87713 1.22875 1.02005 0.98800 0.93936 1.22164 0.94639 0.95501 0.93403 0.90316 1.60060 1.12999 1.49515 1.06823 1.22488 0.97257 0.96749 0.91640 1.20964 0.91760 0.88060 0.95760 0.88280 1.22080 1.01896 1.00654 0.97056 1.47572 1.12149 1.16276 1.57464 1.21637 0.99618 0.89190 0.95169 1.20177 0.80808 0.88608 0.77512 1.90648 1.70327 1.38871 1.40489 1.23526 1.03252 0.98090 1.04903 1.85287 1.00962 1.23718 1.73645 1.22840 1.00658 1.02113 1.42501 0.91101 1.24972 0.96024 0.97825 0.94736 1.70018 1.09712 1.34144 1.36588 0.86252 0.78042 0.82477 0.78898 1.19964 1.20867 1.19981 1.20744 0.76010 0.87234 0.84312 1.90664 1.52499 1.75033 1.21064 0.92588 0.92336 0.91436 0.89915 0.90373 0.90129 0.91272 0.89097 0.88488 0.82583 0.89705 0.94457 0.91776 0.92243 0.91809 0.93594 0.91162 0.90857 0.89360 0.89647 0.92252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 10.24 37.16 0.38 -0.78 16 2 C 0.12 1.01 6.65 -4.04 -0.03 0.99 16 3 N -0.62 -5.91 2.93 -172.39 -0.51 -6.42 16 4 C 0.11 0.69 7.35 -3.12 -0.02 0.67 16 5 C -0.14 -0.96 6.59 -25.09 -0.17 -1.13 16 6 C 0.06 0.54 3.26 -67.69 -0.22 0.32 16 7 H 0.08 0.65 7.83 -51.93 -0.41 0.24 16 8 N -0.66 -7.70 6.05 -106.70 -0.65 -8.34 16 9 C 0.05 0.53 4.75 -3.82 -0.02 0.51 16 10 C 0.14 1.76 2.88 -67.93 -0.20 1.57 16 11 H 0.10 1.43 6.90 -51.93 -0.36 1.07 16 12 C -0.16 -1.64 9.19 37.16 0.34 -1.30 16 13 N -0.60 -9.24 2.48 -173.93 -0.43 -9.67 16 14 C 0.09 1.19 9.30 59.85 0.56 1.75 16 15 C 0.54 10.80 7.69 -10.99 -0.08 10.71 16 16 O -0.53 -12.14 15.19 5.55 0.08 -12.06 16 17 C -0.15 -3.21 4.71 36.00 0.17 -3.04 16 18 S -0.06 -1.76 20.57 -107.50 -2.21 -3.97 16 19 C -0.53 -15.62 9.50 30.94 0.29 -15.33 16 20 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 21 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 22 N -0.87 -26.64 13.22 55.49 0.73 -25.90 16 23 Si 0.92 21.89 29.55 -169.99 -5.02 16.86 16 24 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 27 C 0.53 6.46 7.65 -10.84 -0.08 6.38 16 28 O -0.52 -8.10 16.92 5.56 0.09 -8.01 16 29 H 0.06 0.34 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.83 7.93 -51.93 -0.41 0.41 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.10 0.82 8.04 -51.93 -0.42 0.40 16 38 H 0.35 4.12 8.37 -39.29 -0.33 3.80 16 39 H 0.08 1.03 6.23 -51.93 -0.32 0.70 16 40 H 0.04 0.33 8.08 -51.93 -0.42 -0.08 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.06 0.58 7.67 -51.93 -0.40 0.18 16 43 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 1.02 6.44 -51.93 -0.33 0.69 16 46 H 0.07 0.96 6.53 -51.93 -0.34 0.62 16 47 H 0.09 1.86 7.40 -51.92 -0.38 1.48 16 48 H 0.09 1.76 8.11 -51.91 -0.42 1.34 16 49 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 LS Contribution 410.57 15.07 6.19 6.19 Total: -1.00 -36.73 410.57 -9.21 -45.94 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -8.31 Total: 2.03 kcal Atomic # 6 Polarization: 2.52 SS G_CDS: 0.83 Total: 3.35 kcal Atomic # 7 Polarization: -49.48 SS G_CDS: -0.85 Total: -50.33 kcal Atomic # 8 Polarization: -20.25 SS G_CDS: 0.18 Total: -20.07 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.21 Total: -3.97 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.73 -9.21 -45.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268050708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.962 kcal (2) G-P(sol) polarization free energy of solvation -36.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds