Wall clock time and date at job start Wed Apr 1 2020 01:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46505 * 109.47068 * 2 1 4 4 C 1.46765 * 124.34844 * 90.00002 * 3 2 1 5 5 C 1.54480 * 105.47306 * 163.00486 * 4 3 2 6 6 C 1.54637 * 101.79655 * 25.39729 * 5 4 3 7 7 H 1.09001 * 110.48391 * 93.89928 * 6 5 4 8 8 N 1.46895 * 110.48453 * 216.54243 * 6 5 4 9 9 C 1.46899 * 110.99750 * 205.00379 * 8 6 5 10 10 C 1.53008 * 109.46999 * 179.97438 * 9 8 6 11 11 H 1.08997 * 109.47178 * 294.99700 * 10 9 8 12 12 C 1.52997 * 109.47116 * 174.99381 * 10 9 8 13 13 N 1.46499 * 109.47078 * 54.99946 * 10 9 8 14 14 C 1.46508 * 120.00114 * 59.99637 * 13 10 9 15 15 C 1.34771 * 120.00417 * 239.99939 * 13 10 9 16 16 O 1.21290 * 119.99505 * 359.97438 * 15 13 10 17 17 C 1.50697 * 120.00659 * 179.97438 * 15 13 10 18 18 S 1.81000 * 109.47469 * 179.97438 * 17 15 13 19 19 C 1.76195 * 100.00065 * 180.02562 * 18 17 15 20 20 H 1.08003 * 120.00124 * 0.02562 * 19 18 17 21 21 C 1.38796 * 119.99924 * 180.02562 * 19 18 17 22 22 N 1.31633 * 120.00017 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99982 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46776 * 60.00233 * 23 21 19 25 25 H 1.48504 * 109.46960 * 180.02562 * 23 21 19 26 26 H 1.48495 * 109.47085 * 299.99784 * 23 21 19 27 27 C 1.34412 * 124.35012 * 270.02663 * 3 2 1 28 28 O 1.21283 * 124.94095 * 0.38910 * 27 3 2 29 29 H 1.09007 * 109.47179 * 299.99875 * 1 2 3 30 30 H 1.08997 * 109.47533 * 59.99719 * 1 2 3 31 31 H 1.09003 * 109.47135 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47211 * 240.00389 * 2 1 3 33 33 H 1.09004 * 109.47148 * 119.99773 * 2 1 3 34 34 H 1.09000 * 110.24541 * 44.00914 * 4 3 2 35 35 H 1.08995 * 110.32113 * 282.04470 * 4 3 2 36 36 H 1.09002 * 110.96988 * 143.53587 * 5 4 3 37 37 H 1.09003 * 110.97155 * 267.26099 * 5 4 3 38 38 H 1.00903 * 111.00007 * 328.95385 * 8 6 5 39 39 H 1.08997 * 109.47189 * 299.99421 * 9 8 6 40 40 H 1.08998 * 109.47593 * 60.00199 * 9 8 6 41 41 H 1.09001 * 109.47392 * 180.02562 * 12 10 9 42 42 H 1.08997 * 109.47595 * 300.00956 * 12 10 9 43 43 H 1.09009 * 109.46573 * 60.00271 * 12 10 9 44 44 H 1.08993 * 109.46795 * 90.00255 * 14 13 10 45 45 H 1.09000 * 109.47369 * 210.00438 * 14 13 10 46 46 H 1.09004 * 109.47086 * 330.00285 * 14 13 10 47 47 H 1.09003 * 109.47069 * 300.00186 * 17 15 13 48 48 H 1.09002 * 109.46910 * 60.00326 * 17 15 13 49 49 H 0.97007 * 119.99778 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2943 2.1620 1.2117 5 6 3.1739 3.3445 0.7487 6 6 2.7695 3.4761 -0.7381 7 1 1.9746 4.2129 -0.8533 8 7 3.9331 3.8409 -1.5570 9 6 3.5169 4.5307 -2.7853 10 6 4.7534 4.8945 -3.6100 11 1 5.3552 5.6194 -3.0619 12 6 4.3159 5.5001 -4.9451 13 7 5.5473 3.6884 -3.8577 14 6 4.9580 2.5596 -4.5823 15 6 6.8196 3.6172 -3.4190 16 8 7.3075 4.5519 -2.8195 17 6 7.6361 2.3764 -3.6734 18 16 9.2897 2.5870 -2.9682 19 6 10.0061 1.0361 -3.3993 20 1 9.4251 0.3052 -3.9422 21 6 11.3170 0.7537 -3.0412 22 7 12.0248 1.6443 -2.3791 23 14 12.0763 -0.8909 -3.4976 24 1 12.0659 -1.0480 -4.9742 25 1 13.4756 -0.9442 -3.0034 26 1 11.2907 -1.9879 -2.8775 27 6 2.2706 2.0965 -1.1097 28 8 2.1208 1.6946 -2.2442 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.8327 1.5533 1.9381 35 1 1.3644 2.5305 1.6446 36 1 2.9300 4.2519 1.3011 37 1 4.2328 3.1042 0.8451 38 1 4.5846 4.4028 -1.0297 39 1 2.8706 3.8753 -3.3690 40 1 2.9738 5.4394 -2.5256 41 1 5.1967 5.7589 -5.5328 42 1 3.7139 4.7753 -5.4931 43 1 3.7252 6.3975 -4.7607 44 1 5.1405 2.6784 -5.6503 45 1 5.4111 1.6301 -4.2375 46 1 3.8841 2.5305 -4.3982 47 1 7.1489 1.5192 -3.2084 48 1 7.7181 2.2093 -4.7474 49 1 12.9412 1.4471 -2.1292 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268050708.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:56:03 Heat of formation + Delta-G solvation = -86.845846 kcal Electronic energy + Delta-G solvation = -28674.690599 eV Core-core repulsion = 24762.144809 eV Total energy + Delta-G solvation = -3912.545790 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 343.172 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51187 -40.85375 -37.94630 -37.42464 -36.17288 -34.58307 -34.04898 -32.61331 -30.19639 -29.85746 -28.02205 -27.75213 -27.63961 -25.62690 -24.24673 -22.81318 -22.40389 -20.26051 -20.19436 -19.53304 -18.26893 -17.86283 -17.53399 -17.08374 -16.87638 -16.83859 -16.45558 -16.11063 -15.63416 -15.44468 -15.04264 -14.84546 -14.59187 -14.48184 -14.40805 -14.36026 -14.07892 -13.76827 -13.56721 -13.35881 -13.26583 -13.20830 -13.15648 -13.04616 -12.87716 -12.82894 -12.77817 -12.59889 -12.27331 -12.11692 -11.85470 -11.80996 -11.68757 -11.12971 -10.94071 -10.76179 -10.27157 -9.69111 -9.55934 -9.35534 -8.65106 -8.34160 -6.11682 1.26937 1.43070 1.45569 1.56077 1.58331 1.69062 2.06828 2.19607 2.29041 2.99235 3.10970 3.29625 3.33690 3.59270 3.74737 3.96991 4.03185 4.08280 4.14021 4.15618 4.20833 4.26007 4.32509 4.39061 4.45084 4.47844 4.48888 4.56953 4.67709 4.70401 4.74525 4.77847 4.82507 4.93146 4.94403 4.96467 5.08130 5.11366 5.24608 5.26263 5.41068 5.64971 5.67024 5.96265 6.14078 6.19695 6.33769 6.39155 7.06625 7.23424 7.25868 8.74856 Molecular weight = 343.17amu Principal moments of inertia in cm(-1) A = 0.010265 B = 0.002988 C = 0.002585 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2726.999319 B = 9368.744389 C =10828.646608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.116 3.884 3 N -0.623 5.623 4 C 0.105 3.895 5 C -0.130 4.130 6 C 0.059 3.941 7 H 0.098 0.902 8 N -0.682 5.682 9 C 0.059 3.941 10 C 0.135 3.865 11 H 0.081 0.919 12 C -0.151 4.151 13 N -0.585 5.585 14 C 0.087 3.913 15 C 0.540 3.460 16 O -0.565 6.565 17 C -0.123 4.123 18 S -0.140 6.140 19 C -0.550 4.550 20 H 0.077 0.923 21 C 0.016 3.984 22 N -0.909 5.909 23 Si 0.997 3.003 24 H -0.263 1.263 25 H -0.275 1.275 26 H -0.263 1.263 27 C 0.514 3.486 28 O -0.566 6.566 29 H 0.070 0.930 30 H 0.036 0.964 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.351 0.649 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.050 0.950 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.059 0.941 46 H 0.082 0.918 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.927 2.467 5.741 28.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.006 4.006 3 N -0.357 5.357 4 C -0.018 4.018 5 C -0.168 4.168 6 C -0.054 4.054 7 H 0.115 0.885 8 N -0.316 5.316 9 C -0.070 4.070 10 C 0.031 3.969 11 H 0.099 0.901 12 C -0.209 4.209 13 N -0.318 5.318 14 C -0.055 4.055 15 C 0.328 3.672 16 O -0.445 6.445 17 C -0.274 4.274 18 S 0.087 5.913 19 C -0.698 4.698 20 H 0.095 0.905 21 C -0.189 4.189 22 N -0.546 5.546 23 Si 0.818 3.182 24 H -0.188 1.188 25 H -0.200 1.200 26 H -0.188 1.188 27 C 0.301 3.699 28 O -0.444 6.444 29 H 0.089 0.911 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.115 0.885 36 H 0.139 0.861 37 H 0.097 0.903 38 H 0.172 0.828 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.085 0.915 45 H 0.077 0.923 46 H 0.100 0.900 47 H 0.112 0.888 48 H 0.116 0.884 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -27.148 2.981 5.813 27.923 hybrid contribution 0.011 -1.236 -0.655 1.399 sum -27.137 1.746 5.158 27.678 Atomic orbital electron populations 1.22070 0.94676 1.03124 1.01812 1.21457 0.95151 0.80777 1.03200 1.48455 1.65437 1.14089 1.07741 1.22266 1.00460 0.92417 0.86631 1.22891 1.01018 1.00431 0.92475 1.22214 0.94365 0.94369 0.94462 0.88493 1.59999 1.14236 1.49878 1.07499 1.22374 0.95973 0.97618 0.91077 1.21223 0.91791 0.86432 0.97416 0.90080 1.22032 1.01757 1.01843 0.95311 1.47554 1.10698 1.17610 1.55905 1.21743 0.99828 0.87954 0.96012 1.19842 0.82119 0.87442 0.77832 1.90632 1.71484 1.39772 1.42573 1.23347 0.99530 0.99576 1.04951 1.85385 1.05990 1.24787 1.75132 1.23158 1.01422 1.02232 1.42947 0.90512 1.26093 0.96365 1.02214 0.94223 1.70173 1.10199 1.36581 1.37627 0.85035 0.77172 0.76911 0.79065 1.18758 1.20018 1.18801 1.21318 0.75796 0.88487 0.84255 1.90621 1.54694 1.76195 1.22868 0.91090 0.94491 0.90078 0.92459 0.88115 0.88922 0.88528 0.86069 0.90335 0.82818 0.90549 0.91730 0.93097 0.91227 0.89200 0.91496 0.92255 0.89964 0.88787 0.88414 0.91922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.98 10.24 71.98 0.74 -1.25 16 2 C 0.12 1.82 6.65 86.38 0.57 2.40 16 3 N -0.62 -11.13 2.93 -817.91 -2.40 -13.53 16 4 C 0.10 1.08 7.35 86.83 0.64 1.72 16 5 C -0.13 -1.56 6.59 31.65 0.21 -1.35 16 6 C 0.06 1.05 3.26 44.93 0.15 1.19 16 7 H 0.10 1.36 7.83 -2.39 -0.02 1.34 16 8 N -0.68 -15.49 6.05 -491.50 -2.97 -18.46 16 9 C 0.06 1.21 4.75 86.31 0.41 1.62 16 10 C 0.13 3.31 2.88 44.99 0.13 3.44 16 11 H 0.08 2.34 6.90 -2.39 -0.02 2.32 16 12 C -0.15 -2.86 9.19 71.98 0.66 -2.20 16 13 N -0.59 -17.86 2.48 -822.57 -2.04 -19.91 16 14 C 0.09 2.30 9.30 127.77 1.19 3.49 16 15 C 0.54 21.97 7.69 87.66 0.67 22.64 16 16 O -0.57 -26.91 15.19 -3.06 -0.05 -26.96 16 17 C -0.12 -5.46 4.71 71.24 0.34 -5.13 16 18 S -0.14 -8.12 20.57 -56.49 -1.16 -9.28 16 19 C -0.55 -32.73 9.50 67.95 0.65 -32.08 16 20 H 0.08 4.31 7.80 -2.91 -0.02 4.29 16 21 C 0.02 0.93 5.49 84.86 0.47 1.40 16 22 N -0.91 -56.79 13.22 21.65 0.29 -56.51 16 23 Si 1.00 44.79 29.55 68.60 2.03 46.82 16 24 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 25 H -0.28 -11.91 7.11 99.48 0.71 -11.20 16 26 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 27 C 0.51 12.32 7.65 87.92 0.67 12.99 16 28 O -0.57 -18.02 16.92 -3.04 -0.05 -18.07 16 29 H 0.07 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 32 H 0.06 1.19 7.93 -2.39 -0.02 1.17 16 33 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 34 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.12 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 1.26 8.04 -2.39 -0.02 1.25 16 38 H 0.35 8.14 8.37 -89.69 -0.75 7.39 16 39 H 0.08 1.75 6.23 -2.39 -0.01 1.73 16 40 H 0.06 0.99 8.08 -2.39 -0.02 0.97 16 41 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.19 7.67 -2.39 -0.02 1.17 16 43 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 44 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 45 H 0.06 1.71 6.44 -2.39 -0.02 1.69 16 46 H 0.08 2.08 6.53 -2.38 -0.02 2.07 16 47 H 0.09 4.04 7.40 -2.39 -0.02 4.02 16 48 H 0.10 4.06 8.11 -2.39 -0.02 4.04 16 49 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -83.33 410.57 1.32 -82.01 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 0.19 Total: 24.99 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 7.49 Total: 8.89 kcal Atomic # 7 Polarization: -101.28 SS G_CDS: -7.13 Total: -108.40 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -0.10 Total: -45.03 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Atomic # 16 Polarization: -8.12 SS G_CDS: -1.16 Total: -9.28 kcal Total: -83.33 1.32 -82.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268050708.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.832 kcal (2) G-P(sol) polarization free energy of solvation -83.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds